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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003513 ID=TCONS_00003513|Name=TCONS_00003513|organism=Clytia hemisphaerica|type=transcript|length=925bp
GTGTGTGGCTTTGGagtttgaaatataatatatcATTTTGTGAAATTATT
GGTCGTATTATAGTATACAAATGATTCGAAAATGTACAACATTGTGAGAT
ATCAGATTAGCAAACATGGGAAAGAAGTTCAAAATCTTTTAGACAAATAC
ATGATACCTGTATATTTGAAACGAATGGGTCTTACCGCTGAACAGCAAAA
GGATCATGCTTCAATTGAGTATATTCTTGACCCAAAAGGAGCATACAATT
CTAACTTAGATGGTTTATCTTTGGTGGTATTGGACGAGAACGAAACAGTA
AGAGCATGCCAAACCAATTACTACATAGATGTAGAAAAATGCAAACGAGA
ATTGACCGAATTCAAACAGTGGTTAGCTTCCTGTGACATTGATAGACAAT
CAAAACTATGGGGATATCTTGAACAACGGAACGAATTTTTCGATGATTAC
ACTAAATTGATGGATAAACTAACACAGAGGATGGACATAGCCCGTTTTTT
ATGCATCGAGAGCACAATTATTGATCCCAAATGGAGAGGACGAGGATTGG
CTTCAATCTTACACAAGAAATCTGCGTACGAGGTTGCCCATAATGAAATG
GCCATTTTGGAAGGTATGATGCCTAACAAATATTGGCAAAGACGTATGGA
GTACCATAAAAATTATTGCGGCTtcacattatttagtaaaagcGTTGCCT
ATGATGATTATGCATGCCCAGCATGGTATAAATTGCCAAATGATACTGAA
AAATAGCCAATCATTATGTTGTAAATTTGAAGTAAAGTGAAAAGACACCA
AGGGTGGTTCATATTCTTCATATTAGTTCACAAATAAACTAggcattttt
ttatcttttagccTCAACATACGTAACTTTGTGCTGTAACGAAACCCGAT
TTAATAAACTTTTCCGGAAAGATTT Run BLAST on NCBI protein sequence of TCONS_00003513-protein >TCONS_00003513-protein ID=TCONS_00003513-protein|Name=TCONS_00003513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MYNIVRYQISKHGKEVQNLLDKYMIPVYLKRMGLTAEQQKDHASIEYILD
PKGAYNSNLDGLSLVVLDENETVRACQTNYYIDVEKCKRELTEFKQWLAS
CDIDRQSKLWGYLEQRNEFFDDYTKLMDKLTQRMDIARFLCIESTIIDPK
WRGRGLASILHKKSAYEVAHNEMAILEGMMPNKYWQRRMEYHKNYCGFTL
FSKSVAYDDYACPAWYKLPNDTEK Run BLAST on NCBI transcript from alignment at sc0000028:99476..100400 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003513 ID=TCONS_00003513|Name=TCONS_00003513|organism=Clytia hemisphaerica|type=transcript|length=925bp|location=Sequence derived from alignment at sc0000028:99476..100400 (Clytia hemisphaerica)
AAATCTTTCCGGAAAAGTTTATTAAATCGGGTTTCGTTACAGCACAAAGT
TACGTATGTTGAggctaaaagataaaaaaatgccTAGTTTATTTGTGAAC
TAATATGAAGAATATGAACCACCCTTGGTGTCTTTTCACTTTACTTCAAA
TTTACAACATAATGATTGGCTATTTTTCAGTATCATTTGGCAATTTATAC
CATGCTGGGCATGCATAATCATCATAGGCAACgcttttactaaataatgt
gaAGCCGCAATAATTTTTATGGTACTCCATACGTCTTTGCCAATATTTGT
TAGGCATCATACCTTCCAAAATGGCCATTTCATTATGGGCAACCTCGTAC
GCAGATTTCTTGTGTAAGATTGAAGCCAATCCTCGTCCTCTCCATTTGGG
ATCAATAATTGTGCTCTCGATGCATAAAAAACGGGCTATGTCCATCCTCT
GTGTTAGTTTATCCATCAATTTAGTGTAATCATCGAAAAATTCGTTCCGT
TGTTCAAGATATCCCCATAGTTTTGATTGTCTATCAATGTCACAGGAAGC
TAACCACTGTTTGAATTCGGTCAATTCTCGTTTGCATTTTTCTACATCTA
TGTAGTAATTGGTTTGGCATGCTCTTACTGTTTCGTTCTCGTCCAATACC
ACCAAAGATAAACCATCTAAGTTAGAATTGTATGCTCCTTTTGGGTCAAG
AATATACTCAATTGAAGCATGATCCTTTTGCTGTTCAGCGGTAAGACCCA
TTCGTTTCAAATATACAGGTATCATGTATTTGTCTAAAAGATTTTGAACT
TCTTTCCCATGTTTGCTAATCTGATATCTCACAATGTTGTACATTTTCGA
ATCATTTGTATACTATAATACGACCAATAATTTCACAAAATgatatatta
tatttcaaactCCAAAGCCACACAC Coding sequence (CDS) from alignment at sc0000028:99476..100400 >TCONS_00003513 ID=TCONS_00003513|Name=TCONS_00003513|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000028:99476..100400 (Clytia hemisphaerica)
CTATTTTTCAGTATCATTTGGCAATTTATACCATGCTGGGCATGCATAAT
CATCATAGGCAACgcttttactaaataatgtgaAGCCGCAATAATTTTTA
TGGTACTCCATACGTCTTTGCCAATATTTGTTAGGCATCATACCTTCCAA
AATGGCCATTTCATTATGGGCAACCTCGTACGCAGATTTCTTGTGTAAGA
TTGAAGCCAATCCTCGTCCTCTCCATTTGGGATCAATAATTGTGCTCTCG
ATGCATAAAAAACGGGCTATGTCCATCCTCTGTGTTAGTTTATCCATCAA
TTTAGTGTAATCATCGAAAAATTCGTTCCGTTGTTCAAGATATCCCCATA
GTTTTGATTGTCTATCAATGTCACAGGAAGCTAACCACTGTTTGAATTCG
GTCAATTCTCGTTTGCATTTTTCTACATCTATGTAGTAATTGGTTTGGCA
TGCTCTTACTGTTTCGTTCTCGTCCAATACCACCAAAGATAAACCATCTA
AGTTAGAATTGTATGCTCCTTTTGGGTCAAGAATATACTCAATTGAAGCA
TGATCCTTTTGCTGTTCAGCGGTAAGACCCATTCGTTTCAAATATACAGG
TATCATGTATTTGTCTAAAAGATTTTGAACTTCTTTCCCATGTTTGCTAA
TCTGATATCTCACAATGTTGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003513-exon-sc0000028-1491911889:99476..100400 | TCONS_00003513-exon-sc0000028-1491911889:99476..100400 | Clytia hemisphaerica | exon |
| TCONS_00003513-exon-sc0000028-1510915933:99476..100400 | TCONS_00003513-exon-sc0000028-1510915933:99476..100400 | Clytia hemisphaerica | exon |
| TCONS_00003513-exon-sc0000028-1575043694:99476..100400 | TCONS_00003513-exon-sc0000028-1575043694:99476..100400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:99476..100400 . |
Blast
The following BLAST results are available for this feature:
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