TCONS_00003492 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003492
Unique Name	TCONS_00003492
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	472

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000028:616123..622106-

transcript sequence

>TCONS_00003492 ID=TCONS_00003492|Name=TCONS_00003492|organism=Clytia hemisphaerica|type=transcript|length=472bp
ACTTTCAATTATGAAAATAAACATTATCAATTATTGTTTGTATGATATTT
AAAAAAGTATACAATTGCAGCGTTTGacagaaaaaataagtttcgaGTTT
TTCCGCTGATTACGTTTACAGACCTATAAGTAGCTTTTAGATGTTATTTC
TCGAACTCATGGTTAACGTATGCTCCAATTTGAATTATAATAACTTTAAT
ATATGGAATCGATGCTTATAAAAGGGTAACTATGGATACAAGAGTGAACG
AGAATATTGGGTTACTAGAGGAGGTTCGACCCACCGCCAAACAAAAGATT
ACAATGTGGAGAAGTATCACCAGTGAACCCATCTTATTCCTTTACTCCAT
CGTTTACATGGTCAATCTTACCATATTACCACAACTTGTCCTCCATAAgG
TGTTACTGCAAAATGAAAACGGTGGAGGTGTCAATAATTCTACTTCTTTA
GTAAATGTGACCACGACAATGG

Run BLAST on NCBI

transcript from alignment at sc0000028:616123..622106-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003492 ID=TCONS_00003492|Name=TCONS_00003492|organism=Clytia hemisphaerica|type=transcript|length=5984bp|location=Sequence derived from alignment at sc0000028:616123..622106- (Clytia hemisphaerica)
ACTTTCAATTATGAAAATAAACATTATCAATTATTGTTTGTATGATATTT
AAAAAAGTATACAATTGCAGCGTTTGACAGAAAAAATAAGTTTCGAGTTT
TTCCGCTGATTACGTTTACAGACCTATAAGTAGCTTTTAGATGTTATTTC
TCGAACTCATGGTTAACGTATGCTCCAATTTGAATTATAATAACTTTAAT
ATATGGAATCGATGCTTATAAAAGGGTAACTATGGATACAAGAGTGAACG
AGAATATTGGTGAGTGATAGCTTTAGGTCTGCTAGGCTACTGTACAGTAA
TCTACTAACGAATTCATGCTCCTGATATATACTACCTGCGGTTTGGCAGA
GGTTTACGATTCAGGATTCAGACTATAGGCTTTCTCTCGGGTACCTAATA
AACGAGGTATGTCCTGGTTGGAAACTTTTGAAAAAGAGGCTAATACAGCA
AAATTAGGGGAAAAGAGGGAACTTTCAAAAATATTTTCCCAAAAATCAAT
AATTGGGGGAGGAGTGGAATAAGAATGTACTGAGTGTAAAATTTTCGATA
AATTAACGAGTGTGGGGGCATTTATTCGGTACCTAAATGTATTGATATAG
TAACAGTTTGTAGCACTTAACTCTTTCAAATTGAAAATTTTTATTTTATT
GTGTTGTTATAGGGTTACTAGAGGAGGTTCGACCCACCGCCAAACAAAAG
ATTACAATGTGGAGAAGTATCACCAGTGAACCCATCTTATTCCTTTACTC
CATCGTTTACATGGTCAATCTTACCATATTACCACAACTTGTCCTCCATA
AGGTAATTTTTGCAATTTCGCTACACGCTTTTTTTTTTATAAGAATAAAC
TTTATAAGAATATTCATGATGAAATTAGCACAAAAAAATAGGAATATGCT
AAGAATATCACCATTATCACCATCATGGAATTTGGGTACTAAAACTATGA
ATGCCATTTTTAGAGCATTTTCGATTACCCCCAAGTAAGGCTCACTCCTT
TCACAAAAATTTTATTCTTGAGACGTATATGTACTAAATTCTGGTCTGAA
TCATGATCCTAACCTAAGAATGCTGTAAGAATATTATTTTAGGCTGATTT
CCCTCAAAAAGTTAATAATATCCATCATGAAATGGACAACACCGCGTGTA
GCCTTTGTATAATCGGTGCTCTTATCCAAAATTCAAGCATGATTTAAGGA
AATATGAGCCAGCAAAACCTCAAAGAGACTTTCGTAGAGGAGATGAGAAA
GCAGTGAGATTTGCTAAAATTTTAGGGTATTTTTCCATTGGAAAGAGGGT
CCTTCCAGTGTTTGTGATATCTATTCAANAACTCCGGTGATCCGTGCTCT
CCTTTCGGTATACGTAACACCATTTTCTAATTTGTAATTGTCAATCACTG
CTTTGCAAGACTCTCCTTAGATGGTCCAACGAGTTGGTGAAAATGCAAGT
ACGCTTCAATATTGTTTCACTTTAACTCTCATAAATTTCTCAGTATGGTG
TCTTTTTTGGTGATTTTTAACCAACTTACATACCTCTTTTATTGTTCCAA
AGGTTTCGGAGAGTAACTTGATGGCTTTCTTTTACCCATGGCCAAGTTCA
AAGCATGTCCATAGCAGTGGGTAAAGAGGCATTTCGGATTTAATTCCTTG
ATAACAGTAGTGACCCAATTTTTCTTTCCTGTCATAACACTGACCACGAT
TATCTTTCACCTTCAAACTCTTCTGATAATTTTATCTTTGATTATGTTGG
CAATAGACATCGCATCTGTTACTTCCATTCCATGGAGACCAATGAAGTCA
AGTTAACCTCCTCGTCTACCCAAGCCGAAGGGCATAAAACTAACTGCTCC
AAATTTGAAGCATCCTCTGTATAAAACTCTGCTATCTGTATAGATTTGGT
GATGTCTAGTAGCATACCAAGCGCCATGATCTCAATCATCTCATTTTGGA
TCTCTGAGATTTTTGGAGAATTGGAGATTGGTTTACGCTCCAATCATTGA
ACAAAGTTTTCGTTTTCCTCTGTCAAGAGCATGAGCAATTGTGTGAAATT
ATAGTCTGAATCTCAGACCTCTACAAAACCCCAGGTAGTATAAGGAGCAC
GAATCCGTTAGTGGATACTAACAGCCTAGTGAAATTAGAGTTTATTTCCG
ACGACGATTCATTGTCCCAACCTCCTCTCAAAGGTATAGCTTGACGAGCT
AGAAATCGAACGGTGGATAGTAATTTGAGGAAAGAAAGCATCTTTGGGTT
GTTCAGCTGTTCCAGGCAAAAAGTGTTAGACAGACTGTCAGATTTGATTA
ACCGACATTGTAGATCCATAGCACATCCAACACAGAAAAACTGACAATTT
TTTCTGATATTGAAACACCGATACACAGTAAAAAATAAGACGAATACCGA
CTATCAGCACACCTTCAAACCCGTATGACCCTCTAATAGCATGGTGATAT
TGTCTACATGACGTTCCTGTTGATAAAGAAACACTTTCAATTATGAAAAT
AAACATTATCAATTATTGTTTGTATGATATTTAAAAAAGTATACAATTGC
AGCGTTTGACAGAAAAAATAAGTTTCGAGTTTTTCCGCTGATTACGTTTA
CAGACCTATAAGTAGCTTTTAGATGTTATTTCTCGAACTCATGGTTAACG
TATGCTCCAATTTGAATTATAATAACTTTAATATATGGAATCGATGCTTA
TAAAAGGGTAACTATGGATACAAGAGTGAACGAGAATATTGGTGAGTGAT
AGCTTTAGGTCTGCTAGGCTACTGTACAGTAATCTACTAACGAATTCATG
CTCCTGATATATACTACCTGCGGTTTGGCAGAGGTTTACGATTCAGGATT
CAGACTATAGGCTTTCTCTCGGGTACCTAATAAACGAGGTATGTCCTGGT
TGGAAACTTTTGAAAAAGAGGCTAATACAGCAAAATTAGGGGAAAAGAGG
GAACTTTCAAAAATATTTTCCCAAAAATCAATAAGTGGGGGAGGAGTGGA
ATAAGAATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNTTTTTCCATTGGAAAGAGGGTCCTTCCAGTG
TTTGTGATATCTATTCATTAAACAGCATATAACACACATTATTTATTCAT
GTTCCATTTAGGTGTTACTGCAAAATGAAAACGGTGGAGGTGTCAATAAT
TCTACTTCTTTAGTAAATGTGACCACGACAATGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001942	XLOC_001942	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003492-exon-sc0000028-1575043694:621848..622106	TCONS_00003492-exon-sc0000028-1575043694:621848..622106	Clytia hemisphaerica	exon
TCONS_00003492-exon-sc0000028-1575043694:621305..621444	TCONS_00003492-exon-sc0000028-1575043694:621305..621444	Clytia hemisphaerica	exon
TCONS_00003492-exon-sc0000028-1575043694:616123..616195	TCONS_00003492-exon-sc0000028-1575043694:616123..616195	Clytia hemisphaerica	exon
TCONS_00003492-exon-sc0000028-1510915933:621848..622106	TCONS_00003492-exon-sc0000028-1510915933:621848..622106	Clytia hemisphaerica	exon
TCONS_00003492-exon-sc0000028-1510915933:621305..621444	TCONS_00003492-exon-sc0000028-1510915933:621305..621444	Clytia hemisphaerica	exon
TCONS_00003492-exon-sc0000028-1510915933:616123..616195	TCONS_00003492-exon-sc0000028-1510915933:616123..616195	Clytia hemisphaerica	exon
TCONS_00003492-exon-sc0000028-1491911889:621848..622106	TCONS_00003492-exon-sc0000028-1491911889:621848..622106	Clytia hemisphaerica	exon
TCONS_00003492-exon-sc0000028-1491911889:621305..621444	TCONS_00003492-exon-sc0000028-1491911889:621305..621444	Clytia hemisphaerica	exon
TCONS_00003492-exon-sc0000028-1491911889:616123..616195	TCONS_00003492-exon-sc0000028-1491911889:616123..616195	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000028	supercontig	sc0000028:616123..622106 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.131545	0	0	0.545746	0.287504	1.73431	2.11073	2.27349	1.83046	2.18669	1.61712	2.69146	2.70194	1.07238	2.21946	0.202532	0.207589	0.716989	0.750277	0.130425	0.190851	0	0	0.724161	0.387778	0.18497	0.197405	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00003492 vs. Swiss-Prot (Human)

BLAST of TCONS_00003492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00003492 (transcript) - C. hemisphaerica