TCONS_00003491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003491
Unique NameTCONS_00003491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003491 ID=TCONS_00003491|Name=TCONS_00003491|organism=Clytia hemisphaerica|type=transcript|length=366bp
CAAATAAAATACTCACGCTGCAAAGAAGTTTTCAAGAGCACCATTGATAG
TATTGGTGAGGTTTCTACAGCAAGAATCATCTTCCTCTTCTCCATATTGG
TCAACTACTGTCACACCAGTGCTAGTTGTGGATGGTGGTGTGGGTAAAGC
GGCTCCGCTATTTGCTTGTGGTGGCATTGTGTGATTTTAGATTAAAACGC
AATTGTTGGTTCTTTTCAGTTTGTTTGATGCAAGTTTCCAGCCTTAATAT
TATTCTCTACTGTAtttcaattgattttttgatttgtgTTCTTCAATGTT
TTCACTTGTTGTTTTCTGCTTCAACTGAATAATCTTCCTCCATTTATACT
CATTCGTCTGAGTTAC
Run BLAST on NCBI

transcript from alignment at sc0000028:551752..552199-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003491 ID=TCONS_00003491|Name=TCONS_00003491|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at sc0000028:551752..552199- (Clytia hemisphaerica)
CAAATAAAATACTCACGCTGCAAAGAAGTTTTCAAGAGCACCATTGATAG
TATTGGTGAGGTTTCTACAGCATGAGTCATGTTCTTCTTCCCCATATTGG
TCAACCACTGTCACACCCGTGGTGNTTGATAGTATTGGTGAGGTTTCTAC
AGCAAGAATCATCTTCCTCTTCTCCATATTGGTCAACTACTGTCACACCA
GTGCTAGTTGTGGATGGTGGTGTGGGTAAAGCGGCTCCGCTATTTGCTTG
TGGTGGCATTGTGTGATTTTAGATTAAAACGCAATTGTTGGTTCTTTTCA
GTTTGTTTGATGCAAGTTTCCAGCCTTAATATTATTCTCTACTGTATTTC
AATTGATTTTTTGATTTGTGTTCTTCAATGTTTTCACTTGTTGTTTTCTG
CTTCAACTGAATAATCTTCCTCCATTTATACTCATTCGTCTGAGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001941XLOC_001941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003491-exon-sc0000028-1575043694:552140..552199TCONS_00003491-exon-sc0000028-1575043694:552140..552199Clytia hemisphaericaexon
TCONS_00003491-exon-sc0000028-1575043694:551752..552057TCONS_00003491-exon-sc0000028-1575043694:551752..552057Clytia hemisphaericaexon
TCONS_00003491-exon-sc0000028-1510915933:552140..552199TCONS_00003491-exon-sc0000028-1510915933:552140..552199Clytia hemisphaericaexon
TCONS_00003491-exon-sc0000028-1510915933:551752..552057TCONS_00003491-exon-sc0000028-1510915933:551752..552057Clytia hemisphaericaexon
TCONS_00003491-exon-sc0000028-1491911889:552140..552199TCONS_00003491-exon-sc0000028-1491911889:552140..552199Clytia hemisphaericaexon
TCONS_00003491-exon-sc0000028-1491911889:551752..552057TCONS_00003491-exon-sc0000028-1491911889:551752..552057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:551752..552199 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.595492	0.487311	0.255858	0.0416022	16.4338	15.7107	8.1855	17.2127	20.6491	287.691	95.2206	177.457	277.614	118.127	102.808	158.501	28.7729	74.1893	125.133	177.663	6.32612	8.06584	0.617022	0.23298	1.03182	1.17722	347.623	254.286	5.13723	2.56052
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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