TCONS_00003486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003486
Unique NameTCONS_00003486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003486 ID=TCONS_00003486|Name=TCONS_00003486|organism=Clytia hemisphaerica|type=transcript|length=301bp
caaaaaaatcacattttcccGAAGAAATGAAAACTATGGCAATTTAATGG
CACATCAATCCGTTATCAAACTATTCAAACATTGTGATcctgatattttc
attttctgctTTCAAATTCCTCATCATTGTCCATTCTGCAAAAAGGAAAT
AATATCATATTTGGTTCCACCTTGTGTTGTTCCCAGCCCCTTGAATGAGA
ATGAAAAACCAAAGGCGTACAGTATTGTTATTAAACCAACAAATGGCTCC
TTTATGAGTGATTACCAAGAAAATGACGATCTGCACATTGGAATCACCAA
T
Run BLAST on NCBI

protein sequence of TCONS_00003486-protein

>TCONS_00003486-protein ID=TCONS_00003486-protein|Name=TCONS_00003486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
KKITFSRRNENYGNLMAHQSVIKLFKHCDPDIFIFCFQIPHHCPFCKKEI
ISYLVPPCVVPSPLNENEKPKAYSIVIKPTNGSFMSDYQENDDLHIGITN
Run BLAST on NCBI

transcript from alignment at sc0000028:429228..429948-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003486 ID=TCONS_00003486|Name=TCONS_00003486|organism=Clytia hemisphaerica|type=transcript|length=721bp|location=Sequence derived from alignment at sc0000028:429228..429948- (Clytia hemisphaerica)
CAAAAAAATCACATTTTCCCGAAGAAATGAAAACTATGGCAATTTAATGG
CACATCAATCCGTTATCAAACTATTCAAACATTGTGATCCTGATATTTTC
ATTTTCTGCTTTCAAATTCCTCATCATTGTCCATTCTGCAAAAAGGAAAT
AATATCATATTTGGTTCCACCTTGTGTTGTTCCCAGCCCCTTGAATGAGA
ATGAAAAACCAAAGGCGTACAGTATTGTTATTAAACCAACAAATGGCTCC
TTTATGAGGTAAGGATTATTTTCTTGATATTTTACATGGACATTTATGGC
TTAAGCAGTCTTTCGATTTTTTCACGGGGTCCACGGTCAGCCGGCACGGC
TGAATTGGGAGAAGCGGGGGATTCGAACCGGGGATCCCTGTTTTGAAATG
CTGACGCATCGATCATTGGACCAGCGCTCCTTTTATTCATATCATTTTTG
GAGATGTTACCAGTTTGATAGATTTCGTAACCCATCTTTTGAACCAACTG
GTTAAATCTGTTACAGTCTTACAATATACCTTTCTCGATTTTATTTTTAG
AAAATTAGATTGCCGGCCGGGGAGCTAAATTTGGAATATGAGATGTATTT
AGGTGAATCAAGAGATATTTTGGTGACGCTAGTTAGGAAGAAAGTTTTGA
ACGACTAAATTATCCTCTTTTTTGACAGTGATTACCAAGAAAATGACGAT
CTGCACATTGGAATCACCAAT

Coding sequence (CDS) from alignment at sc0000028:429228..429948-

>TCONS_00003486 ID=TCONS_00003486|Name=TCONS_00003486|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000028:429228..429948- (Clytia hemisphaerica)
TGATTACCAAGAAAATGACGATCTGCACATTGGAATCACCAATAAAAAAA
TCACATTTTCCCGAAGAAATGAAAACTATGGCAATTTAATGGCACATCAA
TCCGTTATCAAACTATTCAAACATTGTGATCCTGATATTTTCATTTTCTG
CTTTCAAATTCCTCATCATTGTCCATTCTGCAAAAAGGAAATAATATCAT
ATTTGGTTCCACCTTGTGTTGTTCCCAGCCCCTTGAATGAGAATGAAAAA
CCAAAGGCGTACAGTATTGTTATTAAACCAACAAATGGCTCCTTTATGAG
TGATTACCAAGAAAATGACGATCTGCACATTGGAATCACCAATAAAAAAA
TCACATTTTCCCGAAGAAATGAAAACTATGGCAATTTAATGGCACATCAA
TCCGTTATCAAACTATTCAAACATTGTGATCCTGATATTTTCATTTTCTG
CTTTCAAATTCCTCATCATTGTCCATTCTGCAAAAAGGAAATAATATCAT
ATTTGGTTCCACCTTGTGTTGTTCCCAGCCCCTTGAATGAGAATGAAAAA
CCAAAGGCGTACAGTATTGTTATTAAACCAACAAATGGCTCCTTTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001938XLOC_001938Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003486-proteinTCONS_00003486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003486-exon-sc0000028-1575043694:429691..429948TCONS_00003486-exon-sc0000028-1575043694:429691..429948Clytia hemisphaericaexon
TCONS_00003486-exon-sc0000028-1575043694:429228..429270TCONS_00003486-exon-sc0000028-1575043694:429228..429270Clytia hemisphaericaexon
TCONS_00003486-exon-sc0000028-1510915933:429691..429948TCONS_00003486-exon-sc0000028-1510915933:429691..429948Clytia hemisphaericaexon
TCONS_00003486-exon-sc0000028-1510915933:429228..429270TCONS_00003486-exon-sc0000028-1510915933:429228..429270Clytia hemisphaericaexon
TCONS_00003486-exon-sc0000028-1491911889:429691..429948TCONS_00003486-exon-sc0000028-1491911889:429691..429948Clytia hemisphaericaexon
TCONS_00003486-exon-sc0000028-1491911889:429228..429270TCONS_00003486-exon-sc0000028-1491911889:429228..429270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:429228..429948 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.48551	1.39072	1.94734	3.21613	1.56083	1.79555	1.0246	0.798044	1.5309	2.34699	1.44565	1.18539	0.818843	0.42843	2.60669	0	0.441604	0	5.37572	4.79771	0	1.12724	0	0.43554
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032016DUF4796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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