TCONS_00003485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003485
Unique NameTCONS_00003485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003485 ID=TCONS_00003485|Name=TCONS_00003485|organism=Clytia hemisphaerica|type=transcript|length=1037bp
TCAGTTGgtgttcaaaaagaaaaagaaggctGGGACGAGTGTGCTTGTAT
TGTACTGATCAAAGATGGTAGCCCGAGTGACGAGGAGAAAGAATGGATGA
AAAAATGGAATAAGTGCCTGTCTTCGTCACTGAAAGATACTCAATGGACA
AAAGAAAGATATGATGAGAATCAGTTGAATTGTTATGATTACGTCATCCG
TATGTTATCCAAAATACAAGGCCGAGAAATGAACAAGCAGGATTTTGTGC
AAGATCACATTCTACCCACTACCAAAAAAGTAGCGAAATATTTGAAGCTA
CACAAGAGTATCCTTTGGTCAGAGAATGGTTGTCATTTTCAACAAAGTGG
TCAATAGGTTGAAAATGTTTATTGATGCACTCGAACACAAATTGacaaaa
agtcaacaaaaaatcaaaaacaaaagaaggtaaaattttatttttctcgt
TGAAAAAGATTTATGTTTCAACGTTTGTCAGTTAAAATGCGCAACTGAAG
ACCTATCGAAGATTGAGACTCTCAATATGGAACTACATTTGAAAAAGGAC
TTTGGGAAACTTTAAATTCAAAGCTTGGAACTTAGACTTGGATGATAATG
GATACAAAATGAGTAAGGGTTGATAAAGATGATGGAGGCTAAATATAACG
GAATATAATaataaatcttaaatttttaaataatattgaTTGGATTTTAC
ATCGTCGCCAAATGGGTACTGAAACGTGTGGAGATACGCCAAGATTACTG
GCCAAAACGAAAAGCTCCAAATGCAATTATATTTGTCATTGTTGCGAGGG
TTGTGCTTGATGGTTGAGCTCCAAACaatatcttctttttttccGTAAAA
AGTAGACACCCGACATTTCATTCAATTGTTACGAAACATTGATTTACAAT
TTGCTAATACTTGTTAGAAATTCTCGAACAAATTTTCCCAATCAAATTGG
AGTTATGTTCCGACTAACATACCAGAAAAGTAGGAGCCTCGAATGATATT
GATGTTGTAACGCTGCGATTGGTTGTGGATAAACACT
Run BLAST on NCBI

protein sequence of TCONS_00003485-protein

>TCONS_00003485-protein ID=TCONS_00003485-protein|Name=TCONS_00003485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
SVGVQKEKEGWDECACIVLIKDGSPSDEEKEWMKKWNKCLSSSLKDTQWT
KERYDENQLNCYDYVIRMLSKIQGREMNKQDFVQDHILPTTKKVAKYLKL
HKSILWSENGCHFQQSGQ
Run BLAST on NCBI

transcript from alignment at sc0000028:387573..390639-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003485 ID=TCONS_00003485|Name=TCONS_00003485|organism=Clytia hemisphaerica|type=transcript|length=3067bp|location=Sequence derived from alignment at sc0000028:387573..390639- (Clytia hemisphaerica)
TCAGTTGGTGTTCAAAAAGAAAAAGAAGGCTGGGACGAGTGTGCTTGTAT
TGTACTGATCAAAGATGGTAGCCCGAGTGACGAGGAGAAAGAATGGATGA
AAAAATGGAATAAGTGCCTGTCTTCGTCACTGAAAGATACTCAATGGACA
AAAGAAAGGTATGTCGATAAGGGATCATTTGTTCAGATACCTTTTAATAC
CGGAAAAAGGGTTTTTGTCAGTGTATAAACAGGAGAGGCCACTCATATGG
TCCGACCTGAGGTATATGGCTGTCCTTAAAGGGACATTAAAGTAGTAAAA
AACATTGCGCGAACCACGTGTCATTAAAGAGAACAATTAAAATCACGTGC
CCAAAACAAACTTGTAAAACAATTGAAAAATCCAAATTAGCCATTTTTTG
AGATACTAGAAATGCAGGCGAATATGCATAGGGGCAAGGGCTCATTTTAA
GGAAGATATTTTCAAAGCATTTGTTCTATGGTGCACTATAAAGTTTGGAA
ATTGGTGAAAAAAATGCACTCACTGTAAGAGAACTTTTGTGACAATAAGG
AGCTGGACTGTAAGGGTCCGCTTTTAAAAGTATTTAAGTGGCTCATGCCG
TCGTTTAGAAATTTTAGAACCCCCCCCCCAGGGTATAATAAAACCAGTAT
GTACATACTGTCTACCTACATAATATAATACCTAATAATATATAATGTAG
GTATTATAGTTCAGTGTAGGTATATAGGTATATAGGTATTATGCGTTGGG
TTACTTGCCAGGCAACTTTTATTTTTTTAATTCGTGAACTATTTTATTCA
TTTCTAGATATGATGAGAATCAGTTGAATTGTTATGATTACGTCATCCGT
ATGTTATCCAAAATACAAGGCCGAGAAATGAACAAGCAGGATTTTGTGCA
AGATCACATTCTACCCACTACCAAAAAAGTAGCGAAATATTTGAAGCTAC
ACAAGAGTATCCTTTGGTCAGAGAATGGTTGTCATTTTCAACAAAGTGGT
CAATAGGTGAAAGCTATTACACTTCACAAAATAGTAGGTACCCTACCTGT
CGGGAACCTATCTTGTTCCTAGAGCCGTAGCATAGTGCTAAGGCAGAGTG
ATTGGCTATGATGCTATGATGACTTGGGTTCGATCCCTGGTCGGAACATA
CTAAAGACTTACAAAAATGGTTCTTAATAGCTCTCTCATTGACACTCAGC
AATTAAGAAAAGGATCAAGGATAAGGGGAGAAATCCAGAGAGAAAGAGAC
GCCCCTTTCCTACCTTCGGGCATATCGATAGAGGAGCCTTCCGACTGCAG
CCGCAAACTTGCTCCGACTCCACTTACCAAGAGCCACACATGTATCACTT
TTTGATTGCAATAAAAAATCGTGAGCGTTATCAGAATCATAAAAAAGTGA
CCTAAAAATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGATGC
ATTGTGGGATTGTTTCGAGTGTATTACAATAGAAATCTCTTAGGAATTCC
TCAAGGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCACAATGCATCGCTTTTTTAGAAAAATCAAAAACT
CCGATAAGGTCTATTGGGAACCAGTTTGTAGACAGTTGGAATTTTAGAGT
CAAAACTTTTGTGATTCAGTGAATTTTTTAGACAATTTTTTGAGGAAAAA
TTTTTCAGAGTGAGTTGTTGTACCCTCGCCCTCATAAGAATTTTGAAAAC
TTCATGAAACTGATATTTGAAATGTATAACATCTAATTATGTAGATTAAG
CTTTAAAATGTACAACTTCGTCTTAATAAATTTGGTTAAAAATCTCATAA
AAATTCTAATTAAACTCCTCCCCCGTCCGTTGCAACACACCATAAAAATT
AAATTTTAGTCTAGAATGTCAATTTAATTTTTTACAGGTTGAAAATGTTT
ATTGATGCACTCGAACACAAATTGACAAAAAGTCAACAAAAAATCAAAAA
CAAAAGAAGGTAAAATTTTATTTTTCTCGTTGAAAAAGATTTATGTTTCA
ACGTTTGTCAGTTAAAATGCGCAACTGAAGACCTATCGAAGATTGAGACT
CTCAATATGGAACTACATTTGAAAAAGGACTTTGGGAAACTTTAAATTCA
AAGCTTGGAACTTAGACTTGGATGATAATGGATACAAAATGAGTAAGGGT
TGATAAAGATGATGGAGGCTAAATATAACGGAATATAATAATAAATCTTA
AATTTTTAAATAATATTGATTGGATTTTACATCGTCGCCAAATGGGTACT
GAAACGTGTGGAGATACGCCAAGATTACTGGCCAAAACGAAAAGCTCCAA
ATGCAATTATATTTGTCATTGTTGCGAGGGTTGTGCTTGATGGTTGAGCT
CCAAACAATATCTTCTTTTTTTCCGTAAAAAGTAGACACCCGACATTTCA
TTCAATTGTTACGAAACATTGATTTACAATTTGCTAATACTTGTTAGAAA
TTCTCGAACAAATTTTCCCAATCAAATTGGAGTTATGTTCCGACTAACAT
ACCAGAAAAGTAGGAGCCTCGAATGATATTGATGTTGTAACGCTGCGATT
GGTTGTGGATAAACACT

Coding sequence (CDS) from alignment at sc0000028:387573..390639-

>TCONS_00003485 ID=TCONS_00003485|Name=TCONS_00003485|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000028:387573..390639- (Clytia hemisphaerica)
ATATGATGAGAATCAGTTGAATTGTTATGATTACGTCATCCGTATGTTAT
CCAAAATACAAGGCCGAGAAATGAACAAGCAGGATTTTGTGCAAGATCAC
ATTCTACCCACTACCAAAAAAGTAGCGAAATATTTGAAGCTACACAAGAG
TATCCTTTGGTCAGAGAATGGTTGTCATTTTCAACAAAGTGGTCAATAGT
CAGTTGGTGTTCAAAAAGAAAAAGAAGGCTGGGACGAGTGTGCTTGTATT
GTACTGATCAAAGATGGTAGCCCGAGTGACGAGGAGAAAGAATGGATGAA
AAAATGGAATAAGTGCCTGTCTTCGTCACTGAAAGATACTCAATGGACAA
AAGAAAGATATGATGAGAATCAGTTGAATTGTTATGATTACGTCATCCGT
ATGTTATCCAAAATACAAGGCCGAGAAATGAACAAGCAGGATTTTGTGCA
AGATCACATTCTACCCACTACCAAAAAAGTAGCGAAATATTTGAAGCTAC
ACAAGAGTATCCTTTGGTCAGAGAATGGTTGTCATTTTCAACAAAGTGGT
CAATAGTCAGTTGGTGTTCAAAAAGAAAAAGAAGGCTGGGACGAGTGTGC
TTGTATTGTACTGATCAAAGATGGTAGCCCGAGTGACGAGGAGAAAGAAT
GGATGAAAAAATGGAATAAGTGCCTGTCTTCGTCACTGAAAGATACTCAA
TGGACAAAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001937XLOC_001937Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003485-proteinTCONS_00003485-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003485-exon-sc0000028-1575043694:390482..390639TCONS_00003485-exon-sc0000028-1575043694:390482..390639Clytia hemisphaericaexon
TCONS_00003485-exon-sc0000028-1575043694:389634..389832TCONS_00003485-exon-sc0000028-1575043694:389634..389832Clytia hemisphaericaexon
TCONS_00003485-exon-sc0000028-1575043694:387573..388252TCONS_00003485-exon-sc0000028-1575043694:387573..388252Clytia hemisphaericaexon
TCONS_00003485-exon-sc0000028-1510915933:390482..390639TCONS_00003485-exon-sc0000028-1510915933:390482..390639Clytia hemisphaericaexon
TCONS_00003485-exon-sc0000028-1510915933:389634..389832TCONS_00003485-exon-sc0000028-1510915933:389634..389832Clytia hemisphaericaexon
TCONS_00003485-exon-sc0000028-1510915933:387573..388252TCONS_00003485-exon-sc0000028-1510915933:387573..388252Clytia hemisphaericaexon
TCONS_00003485-exon-sc0000028-1491911889:390482..390639TCONS_00003485-exon-sc0000028-1491911889:390482..390639Clytia hemisphaericaexon
TCONS_00003485-exon-sc0000028-1491911889:389634..389832TCONS_00003485-exon-sc0000028-1491911889:389634..389832Clytia hemisphaericaexon
TCONS_00003485-exon-sc0000028-1491911889:387573..388252TCONS_00003485-exon-sc0000028-1491911889:387573..388252Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:387573..390639 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0574151	0	0	0.10237	0.112369	0.473812	0.727592	0.848804	0.649557	0.564334	1.20121	0.612313	0.75688	0.511521	0.908478	0.43748	0.467187	0.218622	0.19065	0.48851	0.473444	0.224284	0.180862	1.68305	2.05511	0.26051	0.0845513	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032016DUF4796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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