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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003484 ID=TCONS_00003484|Name=TCONS_00003484|organism=Clytia hemisphaerica|type=transcript|length=1173bpRun BLAST on NCBI protein sequence of TCONS_00003484-protein >TCONS_00003484-protein ID=TCONS_00003484-protein|Name=TCONS_00003484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp IYIPNFLRKKTAIYIMDPKEQEETDRVNLIHSLKKRVRIEYSRICRHRRQRun BLAST on NCBI transcript from alignment at sc0000028:346371..351183- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003484 ID=TCONS_00003484|Name=TCONS_00003484|organism=Clytia hemisphaerica|type=transcript|length=4813bp|location=Sequence derived from alignment at sc0000028:346371..351183- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:346371..351183- >TCONS_00003484 ID=TCONS_00003484|Name=TCONS_00003484|organism=Clytia hemisphaerica|type=CDS|length=9180bp|location=Sequence derived from alignment at sc0000028:346371..351183- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003484 vs. Swiss-Prot (Human)
Match: EZH2 (Histone-lysine N-methyltransferase EZH2 OS=Homo sapiens GN=EZH2 PE=1 SV=2) HSP 1 Score: 227.254 bits (578), Expect = 1.260e-66 Identity = 127/291 (43.64%), Postives = 185/291 (63.57%), Query Frame = 2
Query: 98 LKKRVRIEYSRICRHRRQKKAEQAKNNYKTNRGKTAELLQKRQDLLEERRELSTIPIAALTEAT----TRKAVIHSGFSYPPQCVSLQTLYSPPALPTMIAWAPLQQNFIVEDETVLHNIPYMGEEVIDKDGQFIEELIKNYDGKVHTSSAFDGIMDDEMFLELLQNMLPYQ----DEIMDVPTTDDNTSMDEDDEKKPMPISSSAKNKEPDPVLFETIAQYFSEHGVTVEEVKQRYLSLKEKS--SVEPPEECTPNIDGPDAISTTKERTMHSFHTLFCRRCYKYDCFLH 940
+KRV+ EY R+ + +R ++A++ K+ + +NR K +L++ + L +E ++ P+ LT + TR+ + S +P Q + L+TL + ++P M +W+PLQQNF+VEDETVLHNIPYMG+EV+D+DG FIEELIKNYDGKVH G ++DE+F+EL+ + Y D+ D P + D +D + S K P +FE I+ F + G T EE+K++Y L E+ PP ECTPNIDGP+A S +E+++HSFHTLFCRRC+KYDCFLH
Sbjct: 15 WRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQK---ILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDREC-GFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHRDDK--ESRPPRKFPSDKIFEAISSMFPDKG-TAEELKEKYKELTEQQLPGALPP-ECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLH 297 The following BLAST results are available for this feature:
BLAST of TCONS_00003484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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