TCONS_00003474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003474
Unique NameTCONS_00003474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003474 ID=TCONS_00003474|Name=TCONS_00003474|organism=Clytia hemisphaerica|type=transcript|length=424bp
tagAGAAGTGACACAGAGAAAAGttacaaaaattaaagaatCTCTCATTC
CGGCTTGAGTCGTGAGTGAGTGAATTTACATAGCCGTTCAGTTTTGGTAT
ATACCTACACAAAgatttgttttatgtttttgggCTTGTAAAGGACTTTG
ATGGTGTGAATATATAAAAGTAAAGGTCAAGCAAACATTATCGTATAATT
TAGAAATGGTTTTTATATGTTGATGTGGAgtacaatttgaaaaatatttc
ttcgtTGAAAAGTTGGATTAAACGAGAAGAATTTGTTGTGAATAAAATAC
AGACTTACCGAACTTACAGAAATAAAATGGCTCGACATTGGTGTGTTTTG
GTCTGCTTTTTATTACTGATGAAAAATGTCAACCCAATGATTTGGATGCA
TTTGGGAACACAAACAAGCACAAT
Run BLAST on NCBI

transcript from alignment at sc0000028:173708..176280-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003474 ID=TCONS_00003474|Name=TCONS_00003474|organism=Clytia hemisphaerica|type=transcript|length=2573bp|location=Sequence derived from alignment at sc0000028:173708..176280- (Clytia hemisphaerica)
TAGAGAAGTGACACAGAGAAAAGTTACAAAAATTAAAGAATCTCTCATTC
CGGCTTGAGTCGTGAGTGAGTGAATTTACATAGCCGTTCAGTTTTGGTAT
ATACCTACACAAAGATTTGTTTTATGTTTTTGGGCTTGTAAAGGACTTTG
ATGGTGTGAATATATAAAAGTAAAGGTCAAGCAAACATTATCGTATAATT
TAGAAATGGTTTTTATATGTTGATGTGGAGTACAATTTGAAAAATATTTC
TTCGTTGAAAAGTTGGATTAAACGAGAAGAATTTGTTGTGAATAAAATAC
AGACTTACCGAACTTACAGAAATAAAATGGCTCGACATTGGTGTGTTTTG
GTCTGCTTTTTATTACTGATGAAAAATGTCAACCCAATGATTTGGATGTA
AGTATGAAATTTATCAACTTTACTTTAGCTTGTTGAAAAAAATCCCAAGG
TAAAAACTAAAAATAAGGCCAAGCACCGTTATCGTCTGATTTTAAAATAA
CGTTTTCCTATCTTTTTTTTCCGTCAAATTTCGTAATTTGACCGCAAATT
GACGGAAAAAAGAGCTAGAGTAAACGTCAAACCAAAATAGTAGTGTCATC
TCTTATAAGGAGTATTAAGTGCTTTCACAAAAGATGCACATGCGAAACAA
GCGCAAAATCAACGGGAAAATTTTTCAGCTAAAAACACCGCCAGCTATGG
GGTAATAAAAGGGTAAGCGGTGCTAAATTTACTGACTGCTGTTGTGGTGC
ACTAAGATTCCACTGACTTTTCGGTATTTGTCCGCTTTTTTTTCCGGGAT
AGCCGATGAAATTGGAATGGTTTTTTCTAAAGAAATGGGAAATACAATCT
TGTGTTAACTTTCAAAGCTCCCGAACTTTCCGAAGCTCATTTTTCAACTA
CCTGGAGTCTTTGTCTCTTTCCGCCAGAAAAGTATCGCTGGAATATTAGT
GCAGGAAGTGAAATCTTGTGCAAAACGGCGGTAGGAAGCAATTTGGCATC
CCCTGTTTATTGACTATTTTTTCTCCCGGGAGGGGTAACCTAGGCATGTT
TATGTTTACAGTTTATGTAGTGTCGCCCTTTAGGGTGCCTTTTTGGAATC
TGGAAGTCCATGTAAAAAAGACAAAATAGGCTTAATTCATTCAAGAGTAA
ACTAAAAACATTACATAATTTTTCAGAGTTGAATTAAAAATATCAAAAAA
TAATTAGTATCATTTTGGTCTGATATAGATGGTCACAAATTATGATTCCA
ATTAGCGCAAATTACAAATTTTCCTTTGATCTTTTTGGAAAGTAAAATAT
TCACACTTGAAGTGTGAAGCTCATTAGACGTCGGAAACTTCAAAGGAAAA
GTGTAAAATAATTGATGTAGACTTGATTATAATTTTGTAACAAAGCACAA
AATTCTTATTTTGATTTACTAAAATAATTTTAAACCCAATAAAGTTTTAT
TTTAAACCAGTTCTTAATTTGCGTTTCATTATAAAAGACAAAGGAAAACA
AAAGAAATTTCAATTATCAATCCATTTCATTTTGTTACTTTTGTAAAAGA
TATTTAGTGAGAAAATTTTCAATTTCAAAAAAAAAGTACAATACAAGTAA
GACTCAAAGGCAAAATGAATACATTAAACACATTAAACTTTTTCTTCGAT
TCTCAAGAAAATGAAGAAGAATTTTTGATTTATTCCTTACGAAACTGAAA
ACTGATACTCCACATACATACGGCATAAAAGCTAACGCACATGTTGCTTC
ATAAGGCTTAGATGTGATCTTCTTGATTTATCCTTCATTTCCGGAATATG
TCAATCAAAGCCATCAAAGTATGACATGTTTACCATTCGATACAAACAAA
CACTCCCATCCATATATGTATATGACATCTTCTAGGGAATGGCCAATTTT
ACATGCATGGGATTTTTCGGGGGTGAAAAATGAAATTTACAAAAGATGAT
AATCATACAAAAGTTTGGAAAAGACCATCACTGGGAAATACCTATTTTAC
ACGCACATAGTTGCCTCGTTCAAATCATACCCTTGATTCACAATCACACA
CATGCAAAAAAATACGTTTTTACAGGTCGAAATGCAAGAACCAATGCATT
TAGAAGAGCAGTATTACACTGCAAAAATAAAAAACCCATGCATAGTAAAT
ATGTGCGATTTCACACCCCGAACTTTCAAACCCACAAGGAAAATCACAAC
CCACCCCCAGAAATGGCCATTTGCCGTGCGAAAATGGCTATTTCACACGC
GTGAGTTTTTAAGATCTTTTCCTTATGAGACGGAGGTATCTTTTACAACT
AATTTTTAAAATCAATACATGTTTTTTTATAAGAACATCTAAAATTTTTG
AAGCCTTCGGGTGTTCTTAACTTTTTAAGCCTTAAAAAGTTCTTAAAATG
TTCTTATTTTCCCCATTTTTTGAGTATTTTTGCCCATTTTCCTAAGAAAT
CGGTTGTTTTTGAGTCTCTAAAGCCTTAACATTTTGGCCATGTTCTTATA
TAGTTTGTTCTTATAAAAAACGTGTACATCTGTTTTTATCTTTCAGGCAT
TTGGGAACACAAACAAGCACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001931XLOC_001931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003474-exon-sc0000028-1575043694:175884..176280TCONS_00003474-exon-sc0000028-1575043694:175884..176280Clytia hemisphaericaexon
TCONS_00003474-exon-sc0000028-1575043694:173708..173734TCONS_00003474-exon-sc0000028-1575043694:173708..173734Clytia hemisphaericaexon
TCONS_00003474-exon-sc0000028-1510915933:175884..176280TCONS_00003474-exon-sc0000028-1510915933:175884..176280Clytia hemisphaericaexon
TCONS_00003474-exon-sc0000028-1510915933:173708..173734TCONS_00003474-exon-sc0000028-1510915933:173708..173734Clytia hemisphaericaexon
TCONS_00003474-exon-sc0000028-1491911889:175884..176280TCONS_00003474-exon-sc0000028-1491911889:175884..176280Clytia hemisphaericaexon
TCONS_00003474-exon-sc0000028-1491911889:173708..173734TCONS_00003474-exon-sc0000028-1491911889:173708..173734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:173708..176280 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.997724	0.209837	0.424953	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.316729	0	0	1.84545	0	0	0.335375	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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