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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003472 ID=TCONS_00003472|Name=TCONS_00003472|organism=Clytia hemisphaerica|type=transcript|length=1675bpRun BLAST on NCBI protein sequence of TCONS_00003472-protein >TCONS_00003472-protein ID=TCONS_00003472-protein|Name=TCONS_00003472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp MDVVNTKAIKVQIGDASVGESPPSEIKDDPITKIKPDKTNKKMNSEADDVRun BLAST on NCBI transcript from alignment at sc0000028:143078..157139- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003472 ID=TCONS_00003472|Name=TCONS_00003472|organism=Clytia hemisphaerica|type=transcript|length=14062bp|location=Sequence derived from alignment at sc0000028:143078..157139- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:143078..157139- >TCONS_00003472 ID=TCONS_00003472|Name=TCONS_00003472|organism=Clytia hemisphaerica|type=CDS|length=8613bp|location=Sequence derived from alignment at sc0000028:143078..157139- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003472 vs. Swiss-Prot (Human)
Match: TM163 (Transmembrane protein 163 OS=Homo sapiens GN=TMEM163 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.377e-21 Identity = 59/213 (27.70%), Postives = 113/213 (53.05%), Query Frame = 3
Query: 453 NDKIEGSG----SPTLTYHEFVKWRKAVIRVSYISIFIQLVLAVTSIVEGLHVDSAGTLGFGVETLLDIATSVVVVWHFHTVDEVFASKAKERITTTVLGIMMCLFSIGMMAKSIYNLVQKKIPFNEFKLLLITSVAAVVFTFLGWIKLYLSQKIGSKSVMMDAMCTFAATSMAVALMLSLTVY-HFTNLWFLDGIVAIIIALVMMFYGISAL 1076
+D +E G S L HE +RK + VS+ SI + L LAV + + SA GF + +LD+ +S +V+W + V S +E I +LG++ L SI ++ K+I++L + +P + L ++ ++ ++ + L +K L + + S++++ D + M +++LS V+ H + +W+LDG + ++I L + YG+ L
Sbjct: 61 SDGLEDRGLLESSTRLKPHEAQNYRKKALWVSWFSIIVTLALAVAAFTVSVMRYSASAFGFAFDAILDVLSSAIVLWRYSNAAAVH-SAHREYIACVILGVIFLLSSICIVVKAIHDLSTRLLPEVDDFLFSVSILSGILCSILAVLKFMLGKVLTSRALITDGFNSLVGGVMGFSILLSAEVFKHDSAVWYLDGSIGVLIGLTIFAYGVKLL 272 The following BLAST results are available for this feature:
BLAST of TCONS_00003472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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