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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003471 ID=TCONS_00003471|Name=TCONS_00003471|organism=Clytia hemisphaerica|type=transcript|length=1042bp
ACGCGACTCCTGTTAAATTTACCGTTTCACGGCTTTAATCTACCTTAGAG
AAACAAAGAGAAGATCTTTATGCGACAACAGTTATATTACAATAATGCGA
TCTTTCATATTTGCAGAATTAATAAAAACTAAACCAGTAACAACAATAGA
AAAAGAACAATTATCATTATGAATTTGGGTACAAAATTATTGGTCTTTTT
CAACttgattttattgtttattgGATTTGCTGGTATAATCGCCGGAGCTG
GTGGTGACAGTTGGTGGGAAGGCGGCGTCATTAGAAGTTATAAAGAAAGT
TTGTTGACGTTGTGTGACGGACAAACTGAGTGCGAACGGAGAAAAGATAT
ATTGGGATTCAAAGAAAACCAAAGAGACAAAGATGCTATTCTTATTGTGC
TCATCGTTTCGATCATCGCAACCTTTGCTGCAGTGGTAAACCTCATGGTG
TTGACATCTTATTGTCGGGAAGATGAAGAAAAATGGAAATGTGGTGCTCT
TATGTTGACATTATTCTCTTTTAGTGCAGCTGTATCTGGTCTTGGACCTG
TCATTTATGCTGAGGTACAATTCGACGATAAATTCGATATCCATAACCAC
GGTTGGTCCATCATCTTCGCATGGATTGGTGCATGTTGTCTTGCATTGTC
GTTCATATTGTCATTCGTACTCATGTTTAACGGTCCTCAAGAAACACATC
CCAAAGAAATTATGAGAAGTGATAGCACATACCCATTAccgatgtaaaat
ggtaaagtGACGCATTCATTTCACGAAAACTTTTCATTAAAGATTTTACT
GCCGTAGAGGAAATAACGTTTCCTGGTGAAGATAAATTGTGATATTTATA
CAGCAATATATTATAGTAttgtaaaaattaaaagaaaatagaagaATTTA
GAGGAAGAAAGATCTTGTAAGCCAAGGGACACTAGAGCTTTACTCCGCAA
GGGAGTGAGATCTAAGTTTCCTGagattttggggtatttttacAGTCGAA
TTAAATAAAAATCAGAGCAATCGCTTTTGAGGCCAATCCACC Run BLAST on NCBI transcript from alignment at sc0000028:135107..138601- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003471 ID=TCONS_00003471|Name=TCONS_00003471|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at sc0000028:135107..138601- (Clytia hemisphaerica)
ACGCGACTCCTGTTAAATTTACCGTTTCACGGCTTTAATCTACCTTAGAG
AAACAAAGAGAAGATCTTTATGCGACAACAGTTATATTACAATAATGCGA
TCTTTCATATTTGCAGAATTAATAAAAACTAAACCAGTAACAACAATAGA
AAAAGAACAATTATCATTATGAATTTGGGTACAAAATTATTGGTCTTTTT
CAACTTGATTTTATTGTTTATTGGATTTGCTGGTATAATCGCCGGAGCTG
GTGGTGACAGTTGGTGGGAAGGCGGCGTCATTAGAAGTTATAAAGAAAGT
TTGTTGACGTTGTGTGACGGACAAACTGAGTGCGAACGGAGAAAAGATAT
ATTGGGATTCAAAGAAAACCAAAGAGGTCGGTATCTTTCTTGTTTTTCAT
ATTTCTGAAGATTGATTACAAGGAAAAGGATGAGATGCTTAAAGGTTTTG
TTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTAATTCAAA
AGCTTTTTCGTATTGGATTGAAACGGATGTGGAGCAAGATTGGTCAGAGA
GGAAAAGAAAAACATTTTTTGCTTATATCAGCATAATATAACAGGGAGAC
ACTGTCCTGATATGAAATATGTGTATGATATGAAACGGGAACACTTAAAT
GCCAAAATATTACGAAATACTTGATTTTGTGTTTAAAAGCATACTAACGA
AGTCTTATAGTTTGTTTTTATCAAAAAACGTTTAAATGTATAGGTAGGTA
GGCTTCTTAAAGATGTATAAGTTTTATAATTTACGTAATTCTACGAAAAT
GATGTTGAAGAAACGTTTTATCCTTTTATCATCGCATTAAACGCACTAAG
AAAAACTGTCAATAACACATAACACCAAAACAATCGTTTTGCATAAAACC
CAGGGAATCTATCGTATGGTATAAGTTCTACCAAATTGGATGATATCCAA
CCAATGACACATCTTAATGAAACAGTAGGTGTTATTTAGACAGTGTATCC
TGAAACGATGACAGAAGATTTTGATTAATATCCTGGAGATAAAAACAAAA
CAAGTATTTTCTTATGAGTAATAATCATTCGCTAAGCACATTTTGCAATT
TTTAATCGATATTTAAAAGGGGTGCTGTCAGGTTGCCATCAGTTAAAATT
GACTAGAAAAGAGTGTGGCTGAGAGCCAATGGCGACTTTTAGATGAGGTC
AACATTTCCCGGGAGTCGTTGTTACTTTACCAGGCGATATCAAATTTCAG
GGCAAAGTTATAGAGTAACGTTTTTGGCATTCCGAAAAAAGACGCACAGG
GAAATTTGATTAAAGGAAGAAAAAGAGAAAGTTAACGAAATTAATTTTGC
TGTCATCTCGATTACGAAACAAACCATAAAAGATGATTCGAAAACGAAAA
CAAAATAGCCACTTAACATTAATTTACACTAACACAATAATTGAAATAAA
CTTTTTTCTTACATCGCGTAATTAGTATATTGCATAACGAATAAATGCAG
TCAAGTAGGTATCAAATCAAAAACTAATTTCATGTTGATCTCCTCTATCT
GATTAGAGATAACAAGACAAGTTTAAAGTAATTTTTCATCAATGAATATT
GCTAACTGGTTTTAAAAATCCCTTAGGGTCAATTCTTCAAAATTCTACTT
CCGAAACTTTTCCCTAAATTTTCAAAAATATTCTATTGTTAATTAATCTT
TAATGACCCTTCATTACTAGCAATAATTATCGTCTTAATTACAGTTTGTT
ATTATCTAAAAAAAGACTTTAACACAAACAACAAACCTCAAAACGAATCT
TCCTAAATATTGTAACCTTCTCGATGTTAAGAATGTGGTAGAATATTTTC
ATTGTGAAGACTGTGGTAAAACACTTTCAATGTGAAGAGTGTTGTAAAAC
ATTTTCAGTGTGAAGGGTGTGGTAAAACATTTTCAATATGAAGAGTGTGG
TAAAACTTTTTTAGTGTGCAGAAAGTGATCATGCATTTTCAAAGTGGAGA
GTGTGGTAAAACATTTTCAATGCGAAAAGTGTGATAAAACATTTCTAATG
TGAAGAAAGTGGAATACATTTTCAAAGTGAAGAGTGTGGTGAAACATTTT
CAATATGAAGAGTGTGGTAAAACATTTTCAAAGTGAAGAGTGTGGTAAAA
CATTTTCAATGCGAAAAGTGTGATAAAACATTTCTAATTTGAAGAAAGTG
GAATACATTTTCAAAGTGAAGAGTGTGGTGATGAAGAGTGCAGTAAAACA
TTTTTAATGTGAAGTGTGTGGTAAAACATTTTCAATATGAAGAGAGTGGT
AAATCATTTTCAATATGAAGAATGTGGTAGAAAGCATTTTCAAAGTCAAG
GGTGTGGTAAATCATTGTCTTCATATAATGACTAAATAACAAAATGTAAT
TTTCATAATTTCTTCAGACAAAGATGCTATTCTTATTGTGCTCATCGTTT
CGATCATCGCAACCTTTGCTGCAGTGGTAAACCTCATGGTGTTGACATCT
TATTGTCGGGAAGATGAAGAAAAATGGAAATGTGGTGCTCTTATGTTGAC
ATTATTCTCTTTTAGTGCAGGTTAGTAACATGCATTTCATTATTATGAGG
CTCAGGCAATTACCCGCACCATGGATCAATTTTAAAATCAGTGGTTCAGT
GGTTCAGTTTTTCTAAAAGTCATTTTCTAAAATAATGTGTATCATGTTGG
AGGAGGTCCCGGAAATGTCCTAAAATCGCTGAAAAAGATTATAGTTTTAA
AACGCTTGAAGAGATTACTCTTTCAATCATATATTCCGAAATAACGCTGG
TTTGAATATAATAAGCGTCTGTGTCGAGGGATCTAATAGTTTGAAAATAA
ATGGGGATCTCTAAGATGTGAACAGTCTGATACATGACTTTTAGCTATAA
CATTAAAACTGGGGAATAATTTACAAACATTATAATTATTACTCATAATT
ACCAATAAATGAACTTTTTTCTCTTCATATAGCTGTATCTGGTCTTGGAC
CTGTCATTTATGCTGAGGTACAATTCGACGATAAATTCGATATCCATAAC
CACGGTTGGTCCATCATCTTCGCATGGATTGGTGCATGTTGTCTTGCATT
GTCGTTCATATTGTCATTCGTACTCATGTTTAACGGTCCTCAAGAAACAC
ATCCCAAAGAAATTATGAGAAGTGATAGCACATACCCATTACCGATGTAA
AATGGTAAAGTGACGCATTCATTTCACGAAAACTTTTCATTAAAGATTTT
ACTGCCGTAGAGGAAATAACGTTTCCTGGTGAAGATAAATTGTGATATTT
ATACAGCAATATATTATAGTATTGTAAAAATTAAAAGAAAATAGAAGAAT
TTAGAGGAAGAAAGATCTTGTAAGCCAAGGGACACTAGAGCTTTACTCCG
CAAGGGAGTGAGATCTAAGTTTCCTGAGATTTTGGGGTATTTTTACAGTC
GAATTAAATAAAAATCAGAGCAATCGCTTTTGAGGCCAATCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003471-exon-sc0000028-1575043694:138226..138601 | TCONS_00003471-exon-sc0000028-1575043694:138226..138601 | Clytia hemisphaerica | exon |
| TCONS_00003471-exon-sc0000028-1575043694:136032..136184 | TCONS_00003471-exon-sc0000028-1575043694:136032..136184 | Clytia hemisphaerica | exon |
| TCONS_00003471-exon-sc0000028-1575043694:135107..135619 | TCONS_00003471-exon-sc0000028-1575043694:135107..135619 | Clytia hemisphaerica | exon |
| TCONS_00003471-exon-sc0000028-1510915933:138226..138601 | TCONS_00003471-exon-sc0000028-1510915933:138226..138601 | Clytia hemisphaerica | exon |
| TCONS_00003471-exon-sc0000028-1510915933:136032..136184 | TCONS_00003471-exon-sc0000028-1510915933:136032..136184 | Clytia hemisphaerica | exon |
| TCONS_00003471-exon-sc0000028-1510915933:135107..135619 | TCONS_00003471-exon-sc0000028-1510915933:135107..135619 | Clytia hemisphaerica | exon |
| TCONS_00003471-exon-sc0000028-1491911889:138226..138601 | TCONS_00003471-exon-sc0000028-1491911889:138226..138601 | Clytia hemisphaerica | exon |
| TCONS_00003471-exon-sc0000028-1491911889:136032..136184 | TCONS_00003471-exon-sc0000028-1491911889:136032..136184 | Clytia hemisphaerica | exon |
| TCONS_00003471-exon-sc0000028-1491911889:135107..135619 | TCONS_00003471-exon-sc0000028-1491911889:135107..135619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:135107..138601 - |
Blast
The following BLAST results are available for this feature:
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