|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003470 ID=TCONS_00003470|Name=TCONS_00003470|organism=Clytia hemisphaerica|type=transcript|length=1528bp
ACGCGACTCCTGTTAAATTTACCGTTTCACGGCTTTAATCTACCTTAGAG
AAACAAAGAGAAGATCTTTATGCGACAACAGTTATATTACAATAATGCGA
TCTTTCATATTTGCAGAATTAATAAAAACTAAACCAGTAACAACAATAGA
AAAAGAACAATTATCATTATGAATTTGGGTACAAAATTATTGGTCTTTTT
CAACttgattttattgtttattgGATTTGCTGGTATAATCGCCGGAGCTG
GTGGTGACAGTTGGTGGGAAGGCGGCGTCATTAGAAGTTATAAAGAAAGT
TTGTTGACGTTGTGTGACGGACAAACTGAGTGCGAACGGAGAAAAGATAT
ATTGGGATTCAAAGAAAACCAAAGAGACAAAGATGCTATTCTTATTGTGC
TCATCGTTTCGATCATCGCAACCTTTGCTGCAGTGGTAAACCTCATGGTG
TTGACATCTTATTGTCGGGAAGATGAAGAAAAATGGAAATGTGGTGCTCT
TATGTTGACATTATTCTCTTTTAGTGCAGCTGTATCTGGTCTTGGACCTG
TCATTTATGCTGAGGTACAATTCGACGATAAATTCGATATCCATAACCAC
GGTTGGTCCATCATCTTCGCATGGATTGGTGCATGTTGTCTTGCATTGTC
GTTCATATTGTCATTCGTACTCATGTTTAACGGTCCTCAAGAAACACATC
CCAAAGAAATTATGAGAAGTGATAGCACATACCCATTAccgatgtaaaat
ggtaaagtGACGCATTCATTTCACGAAAACTTTTCATTAAAGATTTTACT
GCCGTAGAGGAAATAACGTTTCCTGGTGAAGATAAATTGTGATATTTATA
CAGCAATATATTATAGTAttgtaaaaattaaaagaaaatagaagaATTTA
GAGGAAGAAAGATCTTGTAAGCCAAGGGACACTAGAGCTTTACTCCGCAA
GGGAGTGAGATCTAAGTTTCCTGagattttggggtatttttacAGTCGAA
TTAAATAAAAATCAGAGCAATCGCTTTTGAGGCCAATCCACCAGCCTTCA
TTAACCAAATAAGAACACATGGGttcatttaaaggttttgttcttAATTA
AGAGTGATATattttgcttactcatcaattttaattcacaagctttttca
cattggacaTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcggaaacac
ttatgtaaaaacaaaacctttaaactccTTTAAatgaacaattttcaaaa
tattgaatcaAGACACATTTTTGGATATTTACAACAGCGAATGAAGTATT
TTATCATGCCatttaaggtatgaaaaatgCTACaattattttaatgattt
tattttacacataattattatttctttgaaattttattgtaaattttcta
aaactatttaggttattttttattaaaaaaaacttttcttgtaCAAAGCT
TTCTTACGTTAAGTCCAAACACTTTCAGTTAATTTAgttttgtaaaactt
tttttgtcattACATAATTAAGTAAGAC Run BLAST on NCBI protein sequence of TCONS_00003470-protein >TCONS_00003470-protein ID=TCONS_00003470-protein|Name=TCONS_00003470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MNLGTKLLVFFNLILLFIGFAGIIAGAGGDSWWEGGVIRSYKESLLTLCD
GQTECERRKDILGFKENQRDKDAILIVLIVSIIATFAAVVNLMVLTSYCR
EDEEKWKCGALMLTLFSFSAAVSGLGPVIYAEVQFDDKFDIHNHGWSIIF
AWIGACCLALSFILSFVLMFNGPQETHPKEIMRSDSTYPLPM Run BLAST on NCBI transcript from alignment at sc0000028:133710..138601- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003470 ID=TCONS_00003470|Name=TCONS_00003470|organism=Clytia hemisphaerica|type=transcript|length=4892bp|location=Sequence derived from alignment at sc0000028:133710..138601- (Clytia hemisphaerica)
ACGCGACTCCTGTTAAATTTACCGTTTCACGGCTTTAATCTACCTTAGAG
AAACAAAGAGAAGATCTTTATGCGACAACAGTTATATTACAATAATGCGA
TCTTTCATATTTGCAGAATTAATAAAAACTAAACCAGTAACAACAATAGA
AAAAGAACAATTATCATTATGAATTTGGGTACAAAATTATTGGTCTTTTT
CAACTTGATTTTATTGTTTATTGGATTTGCTGGTATAATCGCCGGAGCTG
GTGGTGACAGTTGGTGGGAAGGCGGCGTCATTAGAAGTTATAAAGAAAGT
TTGTTGACGTTGTGTGACGGACAAACTGAGTGCGAACGGAGAAAAGATAT
ATTGGGATTCAAAGAAAACCAAAGAGGTCGGTATCTTTCTTGTTTTTCAT
ATTTCTGAAGATTGATTACAAGGAAAAGGATGAGATGCTTAAAGGTTTTG
TTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTAATTCAAA
AGCTTTTTCGTATTGGATTGAAACGGATGTGGAGCAAGATTGGTCAGAGA
GGAAAAGAAAAACATTTTTTGCTTATATCAGCATAATATAACAGGGAGAC
ACTGTCCTGATATGAAATATGTGTATGATATGAAACGGGAACACTTAAAT
GCCAAAATATTACGAAATACTTGATTTTGTGTTTAAAAGCATACTAACGA
AGTCTTATAGTTTGTTTTTATCAAAAAACGTTTAAATGTATAGGTAGGTA
GGCTTCTTAAAGATGTATAAGTTTTATAATTTACGTAATTCTACGAAAAT
GATGTTGAAGAAACGTTTTATCCTTTTATCATCGCATTAAACGCACTAAG
AAAAACTGTCAATAACACATAACACCAAAACAATCGTTTTGCATAAAACC
CAGGGAATCTATCGTATGGTATAAGTTCTACCAAATTGGATGATATCCAA
CCAATGACACATCTTAATGAAACAGTAGGTGTTATTTAGACAGTGTATCC
TGAAACGATGACAGAAGATTTTGATTAATATCCTGGAGATAAAAACAAAA
CAAGTATTTTCTTATGAGTAATAATCATTCGCTAAGCACATTTTGCAATT
TTTAATCGATATTTAAAAGGGGTGCTGTCAGGTTGCCATCAGTTAAAATT
GACTAGAAAAGAGTGTGGCTGAGAGCCAATGGCGACTTTTAGATGAGGTC
AACATTTCCCGGGAGTCGTTGTTACTTTACCAGGCGATATCAAATTTCAG
GGCAAAGTTATAGAGTAACGTTTTTGGCATTCCGAAAAAAGACGCACAGG
GAAATTTGATTAAAGGAAGAAAAAGAGAAAGTTAACGAAATTAATTTTGC
TGTCATCTCGATTACGAAACAAACCATAAAAGATGATTCGAAAACGAAAA
CAAAATAGCCACTTAACATTAATTTACACTAACACAATAATTGAAATAAA
CTTTTTTCTTACATCGCGTAATTAGTATATTGCATAACGAATAAATGCAG
TCAAGTAGGTATCAAATCAAAAACTAATTTCATGTTGATCTCCTCTATCT
GATTAGAGATAACAAGACAAGTTTAAAGTAATTTTTCATCAATGAATATT
GCTAACTGGTTTTAAAAATCCCTTAGGGTCAATTCTTCAAAATTCTACTT
CCGAAACTTTTCCCTAAATTTTCAAAAATATTCTATTGTTAATTAATCTT
TAATGACCCTTCATTACTAGCAATAATTATCGTCTTAATTACAGTTTGTT
ATTATCTAAAAAAAGACTTTAACACAAACAACAAACCTCAAAACGAATCT
TCCTAAATATTGTAACCTTCTCGATGTTAAGAATGTGGTAGAATATTTTC
ATTGTGAAGACTGTGGTAAAACACTTTCAATGTGAAGAGTGTTGTAAAAC
ATTTTCAGTGTGAAGGGTGTGGTAAAACATTTTCAATATGAAGAGTGTGG
TAAAACTTTTTTAGTGTGCAGAAAGTGATCATGCATTTTCAAAGTGGAGA
GTGTGGTAAAACATTTTCAATGCGAAAAGTGTGATAAAACATTTCTAATG
TGAAGAAAGTGGAATACATTTTCAAAGTGAAGAGTGTGGTGAAACATTTT
CAATATGAAGAGTGTGGTAAAACATTTTCAAAGTGAAGAGTGTGGTAAAA
CATTTTCAATGCGAAAAGTGTGATAAAACATTTCTAATTTGAAGAAAGTG
GAATACATTTTCAAAGTGAAGAGTGTGGTGATGAAGAGTGCAGTAAAACA
TTTTTAATGTGAAGTGTGTGGTAAAACATTTTCAATATGAAGAGAGTGGT
AAATCATTTTCAATATGAAGAATGTGGTAGAAAGCATTTTCAAAGTCAAG
GGTGTGGTAAATCATTGTCTTCATATAATGACTAAATAACAAAATGTAAT
TTTCATAATTTCTTCAGACAAAGATGCTATTCTTATTGTGCTCATCGTTT
CGATCATCGCAACCTTTGCTGCAGTGGTAAACCTCATGGTGTTGACATCT
TATTGTCGGGAAGATGAAGAAAAATGGAAATGTGGTGCTCTTATGTTGAC
ATTATTCTCTTTTAGTGCAGGTTAGTAACATGCATTTCATTATTATGAGG
CTCAGGCAATTACCCGCACCATGGATCAATTTTAAAATCAGTGGTTCAGT
GGTTCAGTTTTTCTAAAAGTCATTTTCTAAAATAATGTGTATCATGTTGG
AGGAGGTCCCGGAAATGTCCTAAAATCGCTGAAAAAGATTATAGTTTTAA
AACGCTTGAAGAGATTACTCTTTCAATCATATATTCCGAAATAACGCTGG
TTTGAATATAATAAGCGTCTGTGTCGAGGGATCTAATAGTTTGAAAATAA
ATGGGGATCTCTAAGATGTGAACAGTCTGATACATGACTTTTAGCTATAA
CATTAAAACTGGGGAATAATTTACAAACATTATAATTATTACTCATAATT
ACCAATAAATGAACTTTTTTCTCTTCATATAGCTGTATCTGGTCTTGGAC
CTGTCATTTATGCTGAGGTACAATTCGACGATAAATTCGATATCCATAAC
CACGGTTGGTCCATCATCTTCGCATGGATTGGTGCATGTTGTCTTGCATT
GTCGTTCATATTGTCATTCGTACTCATGTTTAACGGTCCTCAAGAAACAC
ATCCCAAAGAAATTATGAGAAGTGATAGCACATACCCATTACCGATGTAA
AATGGTAAAGTGACGCATTCATTTCACGAAAACTTTTCATTAAAGATTTT
ACTGCCGTAGAGGAAATAACGTTTCCTGGTGAAGATAAATTGTGATATTT
ATACAGCAATATATTATAGTATTGTAAAAATTAAAAGAAAATAGAAGAAT
TTAGAGGAAGAAAGATCTTGTAAGCCAAGGGACACTAGAGCTTTACTCCG
CAAGGGAGTGAGATCTAAGTTTCCTGAGATTTTGGGGTATTTTTACAGTC
GAATTAAATAAAAATCAGAGCAATCGCTTTTGAGGCCAATCCACCAGCCT
TCATTAACCAAATAAGAACACATGGGTTCATTTAAAGGTTTTGTTCTTAA
TTAAGAGTGATATATTTTGCTTACTCATCAATTTTAATTCACAAGCTTTT
TCACATTGGACATTGNGAGGTCCCGGAAATGTCCTAAAATCGCTGAAAAA
GATTATAGTTTTAAAACGCTTGAAGAGATTACTCTTTCAATCATATATTC
CGAAATAACGCTGGTTTGAATATAATAAGCGTCTGTGTCGAGGGATCTAA
TAGTTTGAAAATAAATGGGGATTTCTAAGATGTGAACCTGATACATGACT
TTTAGCTATAACATTAAAACTGGGGAATAATTTACAAACATTATAATTAT
TACTCATAATTACCAATAAATGAACTTTTTTCTCTTCATATAGCTGTATC
TGGTCTTGGACCTGTCATTTATGCTGAGGTACAATTCGACGATAAATTCG
ATATCCATAACCACGGTTGGTCCATCATCTTCGCATGGATTGGTGCATGT
TGTCTTGCATTGTCGTTCATATTGTCATTCGTACTCATGTTTAACGGTCC
TCAAGAAACACATCCCAAAGAAATTATGAGAAGTGATAGCACATACCCAT
TACCGATGTAAAATGGTAAAGTGACGCATTCATTTCACGAAAACTTTTCA
TTAAAGATTTTACTGCCGTAGAGGAAATAACGTTTCCTGGTGAAGATAAA
TTGTGATATTTATACAGCAATATATTATAGTATTGTAAAAATTAAAAGAA
AATAGAAGAATTTAGAGGAAGAAAGATCTTGTAAGCCAAGGGACACTAGA
GCTTTACTCCGCAAGGGAGTGAGATCTAAGTTTCCTGAGATTTTGGGGTA
TTTTTACAGTCGAATTAAATAAAAATCAGAGCAATCGCTTTTGAGGCCAA
TCCACCAGCCTTCATTAACCAAATAAGAACACATGGGTTCATTTAAAGGT
TTTGTTCTTAATTAAGAGTGATATATTTTGCTTACTCATCAATTTTAATT
CACAAGCTTTTTCACATTGGACATTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCGGAAACACTTATGTAAAAACAAAACCTTTAAACTCCTTTAAATG
AACAATTTTCAAAATATTGAATCAAGACACATTTTTGGATATTTACAACA
GCGAATGAAGTATTTTATCATGCCATTTAAGGTATGAAAAATGCTACAAT
TATTTTAATGATTTTATTTTACACATAATTATTATTTCTTTGAAATTTTA
TTGTAAATTTTCTAAAACTATTTAGGTTATTTTTTATTAAAAAAAACTTT
TCTTGTACAAAGCTTTCTTACGTTAAGTCCAAACACTTTCAGTTAATTTA
GTTTTGTAAAACTTTTTTTGTCATTACATAATTAAGTAAGAC Coding sequence (CDS) from alignment at sc0000028:133710..138601- >TCONS_00003470 ID=TCONS_00003470|Name=TCONS_00003470|organism=Clytia hemisphaerica|type=CDS|length=1737bp|location=Sequence derived from alignment at sc0000028:133710..138601- (Clytia hemisphaerica)
CTGTATCTGGTCTTGGACCTGTCATTTATGCTGAGGTACAATTCGACGAT
AAATTCGATATCCATAACCACGGTTGGTCCATCATCTTCGCATGGATTGG
TGCATGTTGTCTTGCATTGTCGTTCATATTGTCATTCGTACTCATGTTTA
ACGGTCCTCAAGAAACACATCCCAAAGAAATTATGAGAAGTGATAGCACA
TACCCATTACCGATGTAAACAAAGATGCTATTCTTATTGTGCTCATCGTT
TCGATCATCGCAACCTTTGCTGCAGTGGTAAACCTCATGGTGTTGACATC
TTATTGTCGGGAAGATGAAGAAAAATGGAAATGTGGTGCTCTTATGTTGA
CATTATTCTCTTTTAGTGCAGATGAATTTGGGTACAAAATTATTGGTCTT
TTTCAACTTGATTTTATTGTTTATTGGATTTGCTGGTATAATCGCCGGAG
CTGGTGGTGACAGTTGGTGGGAAGGCGGCGTCATTAGAAGTTATAAAGAA
AGTTTGTTGACGTTGTGTGACGGACAAACTGAGTGCGAACGGAGAAAAGA
TATATTGGGATTCAAAGAAAACCAAAGAGCTGTATCTGGTCTTGGACCTG
TCATTTATGCTGAGGTACAATTCGACGATAAATTCGATATCCATAACCAC
GGTTGGTCCATCATCTTCGCATGGATTGGTGCATGTTGTCTTGCATTGTC
GTTCATATTGTCATTCGTACTCATGTTTAACGGTCCTCAAGAAACACATC
CCAAAGAAATTATGAGAAGTGATAGCACATACCCATTACCGATGTAAACA
AAGATGCTATTCTTATTGTGCTCATCGTTTCGATCATCGCAACCTTTGCT
GCAGTGGTAAACCTCATGGTGTTGACATCTTATTGTCGGGAAGATGAAGA
AAAATGGAAATGTGGTGCTCTTATGTTGACATTATTCTCTTTTAGTGCAG
ATGAATTTGGGTACAAAATTATTGGTCTTTTTCAACTTGATTTTATTGTT
TATTGGATTTGCTGGTATAATCGCCGGAGCTGGTGGTGACAGTTGGTGGG
AAGGCGGCGTCATTAGAAGTTATAAAGAAAGTTTGTTGACGTTGTGTGAC
GGACAAACTGAGTGCGAACGGAGAAAAGATATATTGGGATTCAAAGAAAA
CCAAAGAGCTGTATCTGGTCTTGGACCTGTCATTTATGCTGAGGTACAAT
TCGACGATAAATTCGATATCCATAACCACGGTTGGTCCATCATCTTCGCA
TGGATTGGTGCATGTTGTCTTGCATTGTCGTTCATATTGTCATTCGTACT
CATGTTTAACGGTCCTCAAGAAACACATCCCAAAGAAATTATGAGAAGTG
ATAGCACATACCCATTACCGATGTAAACAAAGATGCTATTCTTATTGTGC
TCATCGTTTCGATCATCGCAACCTTTGCTGCAGTGGTAAACCTCATGGTG
TTGACATCTTATTGTCGGGAAGATGAAGAAAAATGGAAATGTGGTGCTCT
TATGTTGACATTATTCTCTTTTAGTGCAGATGAATTTGGGTACAAAATTA
TTGGTCTTTTTCAACTTGATTTTATTGTTTATTGGATTTGCTGGTATAAT
CGCCGGAGCTGGTGGTGACAGTTGGTGGGAAGGCGGCGTCATTAGAAGTT
ATAAAGAAAGTTTGTTGACGTTGTGTGACGGACAAACTGAGTGCGAACGG
AGAAAAGATATATTGGGATTCAAAGAAAACCAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003470-exon-sc0000028-1575043694:138226..138601 | TCONS_00003470-exon-sc0000028-1575043694:138226..138601 | Clytia hemisphaerica | exon |
| TCONS_00003470-exon-sc0000028-1575043694:136032..136184 | TCONS_00003470-exon-sc0000028-1575043694:136032..136184 | Clytia hemisphaerica | exon |
| TCONS_00003470-exon-sc0000028-1575043694:133710..134708 | TCONS_00003470-exon-sc0000028-1575043694:133710..134708 | Clytia hemisphaerica | exon |
| TCONS_00003470-exon-sc0000028-1510915933:138226..138601 | TCONS_00003470-exon-sc0000028-1510915933:138226..138601 | Clytia hemisphaerica | exon |
| TCONS_00003470-exon-sc0000028-1510915933:136032..136184 | TCONS_00003470-exon-sc0000028-1510915933:136032..136184 | Clytia hemisphaerica | exon |
| TCONS_00003470-exon-sc0000028-1510915933:133710..134708 | TCONS_00003470-exon-sc0000028-1510915933:133710..134708 | Clytia hemisphaerica | exon |
| TCONS_00003470-exon-sc0000028-1491911889:138226..138601 | TCONS_00003470-exon-sc0000028-1491911889:138226..138601 | Clytia hemisphaerica | exon |
| TCONS_00003470-exon-sc0000028-1491911889:136032..136184 | TCONS_00003470-exon-sc0000028-1491911889:136032..136184 | Clytia hemisphaerica | exon |
| TCONS_00003470-exon-sc0000028-1491911889:133710..134708 | TCONS_00003470-exon-sc0000028-1491911889:133710..134708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:133710..138601 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
