TCONS_00003459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003459
Unique NameTCONS_00003459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003459 ID=TCONS_00003459|Name=TCONS_00003459|organism=Clytia hemisphaerica|type=transcript|length=1913bp
GAAAAATAGTTTGTACATCAAAAAGGGTTGGGCgcttgaaattttttatt
gagTTTGTTATATCATAAAGAAGTCTAGACTTGAGTTTGTGAGGTTTTGG
GACCTTTGTCACTCGCGTACCATATATGTTTGTTTCCTATCTCGTTAACA
GATTATTTGAGaaataaattgataaaattcaaatttgatacattttgaTA
ATACATTGAaggcaaacaattttcatatATTCATATTNTGTACCATATAT
GTTTGCTTCCTATCTCGTTAACagattatttgaaaaataaattgataaaa
ttcaaatttgatacattttgaTAATACATTGAaggcaaacaattttcata
tATTCATATTTTTTGGATCTTGGGACCAAAAGATTTTACTtactaaaaaa
ttgaaaaataaatattgaaaagttATAACTATGGGCAAGTGCATCTCAAA
ACAAAACGctgAAGCTGGAGCTGACAAGAAAGCTAAAGAAGGGGAAGTCA
ACGCAAACGATCAGAAAGAAGTTgCAAATGGTGATGTGAAGGTTGAAGAA
GGAAAAACTGAAgAAACGCCTGCAGAAAGCAATGGTGATGCTCCAAAAGA
AAGCTCCGAAGAACCGGCAGCCGAAGACAAGAAAGAAGATGAACCCGCTA
AAACAGAGGAATCGTCAGAACCggaaaaaagtgaagaaacaGCCGCTCCC
GAAGATGTTAAAGTAGAAGCAGCCGCAGAAACGCCGGCCGAACCCACCAC
CGAGGAGCCAGCCGCAGCCGCTGAAACGACAGaagataaaaaagaagaaa
cgacGGAACAACCGGCAACCGAAAATACGGATGATGCCGAGAAAAAAGAT
TAGAAACCTATTCCCATCTACtatcgcaaaaaaaaaacattaaaaaatat
ttgaattaaaaaaatatcgTATACCTTACATCAAGAGAGAACATTTTTTG
AACAACCCCTCACCTAATACATGCCATCTTGGAATGAAGATAATGAAACA
GCTTGATACTATCAACCCCCGCCCTGCGTGCGAGAATGGAGTAAATTAAA
GGAAGGAGGACGACCTTATCCACCCGCTCATTCGCTCGACGTGAAAACGT
TGGAAAAAAGATATGACGATAGGTGACGCTAAAAGAAAACAATTCTACAC
CAAACGAAGGAGATTGGATATTTCGATAACttagatgaatttttttgttt
tgtagtTGGAAAGATAGTCTAGAATAACTAAAAATTGTGTATCGAAAGTT
ATAACTAGTCTTATAATAGTTGGATTATCCTTGCTTGCTTTTCAATTGAT
ACGATGGAAAGATTTCCTCTCGAACTTTTTATTAACCTTAATGTAAATtg
ataaataatatttttttcacctCTTAAAAACTTATATTATGTATAAATGG
AATATGATAAAATATTCGCATTAGTAGCATTCTATAATTAATGTTATTTC
TGAAAagaatacaaaatcaaaacccCTCGGTAAAGATTAACCCTTGCAAA
TGTTCGACGTATAAATCATCTTAGACCTCAGATTATAATGGATATATTGG
ACAAGCTCTTAAATCTGTGTTTTATACACCTTTTAAAATATGGTTATGCT
TATATAGAGGTTGTTATTTCAAGAATTTCATATGAAATCGAAATTCACCA
CATAATTTGAAACAAAACCTCAGCATTTCACTTTGAGTACGtattaaaat
tgaaacttttgaaacaaGTTTTACGACCGAATTGACAAATAATTTGTTCA
AATTACGAACTTAAATTTATACCCTTCTTTTGAATTCCCCAAAATTTAAC
TAGGATTATAAGAAAAGCgaatttattattgttattatgatattgttgtt
gttgttattgtaGAACTTTGCTTGCTGCCAGGTATTTTGAGAATAAAATA
TCATATTctagaa
Run BLAST on NCBI

transcript from alignment at sc0000028:816637..822943+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003459 ID=TCONS_00003459|Name=TCONS_00003459|organism=Clytia hemisphaerica|type=transcript|length=6307bp|location=Sequence derived from alignment at sc0000028:816637..822943+ (Clytia hemisphaerica)
GAAAAATAGTTTGTACATCAAAAAGGGTTGGGCgcttgaaattttttatt
gagTTTGTTATATCATAAAGAAGTCTAGACTTGAGTTTGTGAGGTTTTGG
GACCTTTGTCACTCGCGTACCATATATGTTTGTTTCCTATCTCGTTAACA
GATTATTTGAGaaataaattgataaaattcaaatttgatacattttgaTA
ATACATTGAaggcaaacaattttcatatATTCATATTNTGTACCATATAT
GTTTGCTTCCTATCTCGTTAACagattatttgaaaaataaattgataaaa
ttcaaatttgatacattttgaTAATACATTGAaggcaaacaattttcata
tATTCATATTTTTTGGATCTTGGGACCAAAAGATTTTACTtactaaaaaa
ttgaaaaataaatattgaaaagttATAACTATGGGCAAGTGCATCTCAAA
ACAAAACGGTAAGtcaattcaaatattttgtgtTGTGTCATTTctctgtt
ttattttatattaggAAGAATTTACCATGTATAGTTCTGGTTTGgtcttt
tgaacattttcttcatACTAAAAAACAGACGGGCAACGCCCCCTAAATTA
AATTTTACTTCAGTTCTTCTATTACTATGTTAGTTAAGATTCTAATTCAA
GAAAAAAGGGGGCGTGGAagatcgagaaaaaaattcatgatttttcataa
tttctttctttgaCAAAATTTCTGTATGTACATAATTATTTTAGAGTCCC
TATTTTTAGTCTTATCTTTATTTTAGTCTTAATTCAAACTTTATTTTGTT
ATCAATTGTTTGTCTTTGCTGAACAAAAAGGTCTCTTAACTCTCTTCCCC
CTTAGGTTTTTGGAGTGATTATTAGATGTCTCTTGGTGAAAGTCTGTTGT
CCCTTGACTACTCATCCTCTTAGCTTTATTTTATAAGGAAACTTTTTTAT
CCCTCAAAcccttttttcaatttctgaaGCCCTTTTGgattatcattttt
aagaagACATTTGTGTTGTTATTCGCGTTTGTCATGACCCTTATACAATC
ACCCTTCAAAGATTGGATTAGTATTGCGAGGAATATTAAGTGAAGGTTAA
AATTATCCGATTTTGACGGTTTCTTCCTAAATATACTCCAATTCATGTCA
ATTAGtggtaaatttttgtaaattttgtgaAGTAATATTCCATTAGAGTG
AGTGATTGTTATTCCCTGGTGTGTACAGTACTGTGGTAACTCCTCCTAAC
ATTTCTCACCCCTTCAACTTTCGAACATCTCAAACCCATGACTCATCCTC
ATATTTCAGggaacatttttttcaatttaaaagaagAACTGGTCATCCAT
TATTTTGTTCAACTATTTCTTctttctcattttcattttcaatgttttcg
ATCTACTAGTAATAGATTCACCTCAAGACACTAAATTTTACTATTGCGTC
CAACCTCGTTCTTTTCATCATGTTTATCTGTTAAACGCtaagtcattttt
caaaaagttctccccacttttttaTCGTGTTTTATTTCTGTACCCCTTAT
GGTTACAAACGGGAAACATTAGGTGCCTGTCTTTTGTTGTCCAATTTGGG
ATAGAATTTCCTACTCTTAGAAGGACTATCtgttaaaactttctttttct
tttttctgatcTTACACTACCTGCTGATCCTTCTGTAGTGGACATATAGC
CACACCTCTGTAGTCACAAAGATAAGATCTTCTCTTAAAAGTagggaaaa
taaaaaagtttcaagatatatcttttctttacttgtagaaaaaaaaagtt
tttcccaaTTTATTCTCTTCTTTCCGCCTAATATTATTcgactaaaattt
attttgaaaattattctaaaaacaGGTAGATANTagggaaaataaaaaag
tttcgagATATATCTTTTCTTTactttgtagaaaaaaaaagagtttttcc
CAATTTATTCTCTTCTTTCCGCCTAATATTATTcgactaaaatttatttt
gaaaattattctaaaaacaGGTAGATACAGATTTCTTTTTCTAAccctaa
aaaatcaaaacaaattatattttgttttttctaatccTTTTTTTCAGAAA
GGCTCTGTTGAATTTTATCGATTTAtcctttgaaaaactttttcctgATC
CATCCTGACGATAGAATCAACCTTAATAGAAAAAGTCTTAAGTCCTATAA
GACGTTAAATTAGTCTAATATTTTACCATCTTGATACCTATATTCTGAGA
AAGTTCCTACTAATCTACCCAAATTTAGCCAAGCCAAGTCTTCATAAATT
TCATTGGTCATATACAGATCTTGAGAGTTtgctttgtttattttattttt
agctgAAGCTGGAGCTGACAAGAAAGCTAAAGAAGGTAAGGTAGAATCTA
CTCTATCGGTTATTTGCCATCAAATTATTCTGAAATCTTACCAGCTGACT
CataatgttgtttcaacgtttatctaatgtccacaaCGTCCATATTTAAC
GTTACATGAAcattgtgaacattagataaaggcgaagcaacgttgtgtgc
caattcatgatattcataatacggaaagaccccggtttttgccactactg
gctaaaaccggggtatttccgtagaaaatattacgtcatgaatatcatag
gGTTTTTGGTTCTTATCATGGTTTAGCAAAAGATTTAACGCAATCGAATG
TTTGTCTAGTGCCCCGTTCgatattaaaagttttttttttcaacattagG
GGAAGTCAACGCAAACGATCAGAAAGAAGTTggtaagtttcaaactatta
aCCATAGAGGGGCTCTTGAGAATTTGTGAAGTTCCCCTTTTTGTGTTCCA
TCGTATTGCTAAGGGATATTATTAACTACCATTGAGCCTCTACatctcga
acaagttttctcgtctctactgttaacaatgccttataaaccttactccg
tAACTCGAATGGTTCCTTAATTCCAAAAAATTTGCGTTCCCCgtacgtgt
tcgagttatggagactccaatGTATTATTTCTTGGGCACCCTAAATTTAG
CCATTTTCATTCCTTGCTGAACAaagttttttcattcatttcgaTGCTTT
CTATACACCCCCCCCTAGTACGCACTGAATTTTGAGACATGTCCCGAAAG
AAACATGACCATATTTCCCTTCTACCATCTGGTTTGTATTCCCCATTAAc
gattcttcctttttttcatgTCGTCTAGCAAATGGTGATGTGAAGGTTGA
AGAAGGAAAAACTGAAggtaaaatctaatgaaaaatccctcttttgcttc
aaaatttattttgctgGGAAATTGTTGACCTACTTCTAAATAAGTTTTAC
TTAAAAGTCCATTTTTGAGTCCCTACTGTTCATTAAGgaaattcatcatc
atcatccttcgacctaggtccgaatggacctaggtcggaaacaaacaata
aTCCTCCCTCCACAGCTCTCGATCAGCATTGCAGTGCCCAGTTCCTCAAT
CTCTAGCCCTGTTTCCcgtttcaaaatatcaagaaaagtgCACTTTCTCG
AGCGCCTAGGGCCCACAGGACACCAAAGTAAGATCTCAGACACCATTTCG
TTTTTCGCACGGAAACAGTTACCTGAGAAAGAGAGCATCCTGCTAGTCAG
GACAGAGGAAATTCTTGGGAGTCCATGATATATCTCTTGAAGGGTTGGGT
GGTTGTGGGCAGGGATATTAGGGAGCCCTAGAAAGAGAAGAGTAAAATTC
ATCAACTTCAGATTCATCAGAAACGTTGGTGGGGCTATGGCAAGAAATGA
ATGTTGTTTTCGGATTGCTATTAAATTCGGCGACAATAATACGGCTTGAT
ACTTTTGAAAGTGAAATTAGGTTGTTCGCTGCCTTAGGAGAGAGTAGTAT
ACCTATGCCCCCTATGGTCGAACCCTGAGAGTTTTTCCAAGCAGAGGATG
TTATAAGTTTATTTTTACCAATATTAGTATGTTGAAAGTTTACCTCAGGA
TGTAATGTTCTGTGTTCTTGGAGACTAAGTATATCAATATTGCATTTGGA
AAAACAGGAGAGTAGTTCCTGTTTGCGACTAGTTAAAGTAAGAAAGAGTA
CGCGCGTTAAAAGTGCTAAaaaggaaattaattttttgctgattcaCAAA
AAACAATCTCTGTTCTGTATCTCTGTATAACTCAACTTTACCCCTAGAAA
CGCCTGCAGAAAGCAATGGTGATGCTCCAAAAGAAAGCTCCGAAGAACCG
GCAGCCGAAGACAAGAAAGAAGATGAACCCGCTAAAACAGAGGAATCGTC
AGAACCggaaaaaagtgaagaaacaGCCGCTCCCGAAGATGTTAAAGTAG
AAGCAGCCGCAGAAACGCCGGCCGAACCCACCACCGAGGAGCCAGCCGCA
GCCGCTGAAACGACAGaagataaaaaagaagaaacgacGGAACAACCGGC
AACCGAAAATACGGATGATGCCGAGAAAAAAGGTGTGTAATACGCATCTG
CAAATCTCTTACATACTGCTAAATGTTTCCATGTacactcttcacaattt
catctCTTCCTCACAAACAAAATCTTCCATTCATCTTTTACTCTTCTCTA
AAAAATATTCATTGTAcattggaaatatctttaaaCTTGCAATCAAAATA
CTTGTTATGGTATTTCTGAACCATGCATTCTCTGCATCATATATTTCCAT
TCGTACAACACACTTGACAAAGAAAGAACAACAGAGGACGGTTTCAGTAC
AAAACTATTCATCCACTGCTTGAACCTAAACCGTATATGAAACGTTTCGG
TGATACTacaagtttttaattttttgtttttcttttgattttatttctgt
ttattttatgttaaacagttgactctctctaattcgatttttcaaggatc
aaagaaattttattcgaattatagaaatattcgaatttcaGGGAGTATTA
TACCACTTTCCAACTGAAGGAGCCGCCGACATTTTTTGTTCGCataacag
aaagattcgaagTACAGAGGTTAAGAATTAGAGAAAGTTGACCTTATTTT
GTGAACCTTTGAGGGTTCTCGTTATATGCGTTATACATATGTTACAAGCA
CCAATGACATTCCACACATGTAACAACAAATGACACAAAAAGCAACCAAA
TAAAAAGGCACGTCACACACACGCCCCCGGCTTAcaaatcataataaaat
tttcaaattctaaataccaaattttcgatttcttgtTTTTAGATTAGAAA
CCTATTCCCATCTACtatcgcaaaaaaaaaacattaaaaaatatttgaat
taaaaaaatatcgTATACCTTACATCAAGAGAGAACATTTTTTGAACAAC
CCCTCACCTAATACATGCCATCTTGGAATGAAGATAATGAAACAGCTTGA
TACTATCAACCCCCGCCCTGCGTGCGAGAATGGAGTAAATTAAAGGAAGG
AGGACGACCTTATCCACCCGCTCATTCGCTCGACGTGAAAACGTTGGAAA
AAAGATATGACGATAGGTGACGCTAAAAGAAAACAATTCTACACCAAACG
AAGGAGATTGGATATTTCGATAACttagatgaatttttttgttttgtagt
TGGAAAGATAGTCTAGAATAACTAAAAATTGTGTATCGAAAGTTATAACT
AGTCTTATAATAGTTGGATTATCCTTGCTTGCTTTTCAATTGATACGATG
GAAAGATTTCCTCTCGAACTTTTTATTAACCTTAATGTAAATtgataaat
aatatttttttcacctCTTAAAAACTTATATTATGTATAAATGGAATATG
ATAAAATATTCGCATTAGTAGCATTCTATAATTAATGTTATTTCTGAAAa
gaatacaaaatcaaaacccCTCGGTAAAGATTAACCCTTGCAAATGTTCG
ACGTATAAATCATCTTAGACCTCAGATTATAATGGATATATTGGACAAGC
TCTTAAATCTGTGTTTTATACACCTTTTAAAATATGGTTATGCTTATATA
GAGGTTGTTATTTCAAGAATTTCATATGAAATCGAAATTCACCACATAAT
TTGAAACAAAACCTCAGCATTTCACTTTGAGTACGtattaaaattgaaac
ttttgaaacaaGTTTTACGACCGAATTGACAAATAATTTGTTCAAATTAC
GAACTTAAATTTATACCCTTCTTTTGAATTCCCCAAAATTTAACTAGGAT
TATAAGAAAAGCgaatttattattgttattatgatattgttgttgttgtt
attgtaGAACTTTGCTTGCTGCCAGGTATTTTGAGAATAAAATATCATAT
Tctagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001924XLOC_001924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003459-exon-sc0000028-1491911889:816637..817094TCONS_00003459-exon-sc0000028-1491911889:816637..817094Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1510915933:816637..817094TCONS_00003459-exon-sc0000028-1510915933:816637..817094Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1575043694:816637..817094TCONS_00003459-exon-sc0000028-1575043694:816637..817094Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1491911889:818989..819021TCONS_00003459-exon-sc0000028-1491911889:818989..819021Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1510915933:818989..819021TCONS_00003459-exon-sc0000028-1510915933:818989..819021Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1575043694:818989..819021TCONS_00003459-exon-sc0000028-1575043694:818989..819021Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1491911889:819386..819418TCONS_00003459-exon-sc0000028-1491911889:819386..819418Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1510915933:819386..819418TCONS_00003459-exon-sc0000028-1510915933:819386..819418Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1575043694:819386..819418TCONS_00003459-exon-sc0000028-1575043694:819386..819418Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1491911889:819865..819903TCONS_00003459-exon-sc0000028-1491911889:819865..819903Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1510915933:819865..819903TCONS_00003459-exon-sc0000028-1510915933:819865..819903Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1575043694:819865..819903TCONS_00003459-exon-sc0000028-1575043694:819865..819903Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1491911889:820834..821118TCONS_00003459-exon-sc0000028-1491911889:820834..821118Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1510915933:820834..821118TCONS_00003459-exon-sc0000028-1510915933:820834..821118Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1575043694:820834..821118TCONS_00003459-exon-sc0000028-1575043694:820834..821118Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1491911889:821879..822943TCONS_00003459-exon-sc0000028-1491911889:821879..822943Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1510915933:821879..822943TCONS_00003459-exon-sc0000028-1510915933:821879..822943Clytia hemisphaericaexon
TCONS_00003459-exon-sc0000028-1575043694:821879..822943TCONS_00003459-exon-sc0000028-1575043694:821879..822943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:816637..822943 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.545778	0.117106	0	0	0	0.292129	1.41398	1.32146	0.957423	0.14237	0.70443	0.174611	9.60379	8.39172	2.12306	0.679483	78.8872	103.862	11.4043	12.9945	212.122	191.323	28.7603	53.7778	10.658	3.82487	1.41397	1.69598	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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