|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003454 ID=TCONS_00003454|Name=TCONS_00003454|organism=Clytia hemisphaerica|type=transcript|length=3481bpRun BLAST on NCBI transcript from alignment at sc0000028:785258..828976+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003454 ID=TCONS_00003454|Name=TCONS_00003454|organism=Clytia hemisphaerica|type=transcript|length=43719bp|location=Sequence derived from alignment at sc0000028:785258..828976+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003454 vs. Swiss-Prot (Human)
Match: TXND3 (Thioredoxin domain-containing protein 3 OS=Homo sapiens GN=NME8 PE=2 SV=2) HSP 1 Score: 281.952 bits (720), Expect = 4.034e-82 Identity = 188/562 (33.45%), Postives = 286/562 (50.89%), Query Frame = 3
Query: 93 MAGKRGQAVAIQADVKTDEEWQKMLDTQGLMVVDVYAAWCGPCTAIVNTFRRIKNETGDD-LLHFAAAETDGIQELESYRGKSEPTFLFYGDGELINVIRGCNGPVLNNYILTQLKKEHDILDGKAERTVFVDKALGGHHXXXXXXXXXXXXXXXXXLVKSRTSTLAEVQIPKQVAVALIKPDAVQAGLVDSIIEEIKANGLEILKQEEKVLSKEEAAEFYKQHEGSDHFEQLIEFMSSGPCMTLVVSK------------PGDDT-----GEDLLPEFRALIGPLDVNMAKEEAPESLRAKYGTDSIQNAVHSCDSSESAARELAF---FFPDFNVPMVERMQKKKRLQRTLALIRPNALKKRRDSILKTIEDSGFLIAMQKEVHLERAQVEELYAEHKDQDYFESLVTNMTCGPSLALCLAREDAVQTWRDMLGPKELVMPPSSQSERGEDQDGEDPPAPENQPSDLSLRKRFADPEDEINPLHGADTEEQVQREMNLFFPMETTVAVIKPDAYEKENERELIMSKIKEAGFKISAHKEVTLTKDLASMFYKEHEGKDFF 1715
MA K+ + V +Q + W +ML +GL V+DVY AWCGPC A+ FR++KNE +D +LHFA AE D I L+ +R K EP FLF +G++I I+G N P++N ++ + +E I G+ R + + L + S S VQ + ++A+IKPDAV + V I +I G I + + VL++E+ FY + FE+ + FM+SG LVVS+ P DT ED PE A + P + ++ E L Q+ CD E AA F FFPDF + K +L++TLAL+RPN +R+D +L+ I+D F I Q++V L + + L E++++DYF L+ NMT GPSLAL L R++ +Q W+ +LGP+ + A E P SL +FA +N L+G+D+ E +RE+ FFP+++T+ +IKP A + +RE I+ +KEAGF ++ K++ LT + Y + GKDF+
Sbjct: 1 MASKKRE-VQLQTVINNQSLWDEMLQNKGLTVIDVYQAWCGPCRAMQPLFRKLKNELNEDEILHFAVAEADNIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINLIDEERKIAAGEMARPQYPEIPLVDSDSEV-----------------SEESPCESVQ--ELYSIAIIKPDAVISKKVLEIKRKITKAGFIIEAEHKTVLTEEQVVNFYSRIADQCDFEEFVSFMTSGLSYILVVSQGSKHNPPSEETEPQTDTEPNERSED-QPEVEAQVTPGMMKNKQDSLQEYLER-------QHLAQLCDIEEDAANVAKFMDAFFPDF------KKMKSMKLEKTLALLRPNLFHERKDDVLRIIKDEDFKILEQRQVVLSEKEAQALCKEYENEDYFNKLIENMTSGPSLALVLLRDNGLQYWKQLLGPRTV------------------EEAIEYFPE--SLCAQFAMDSLPVNQLYGSDSLETAEREIQHFFPLQSTLGLIKPHATSE--QREQILKIVKEAGFDLTQVKKMFLTPEQIEKIYPKVTGKDFY 506 HSP 2 Score: 144.821 bits (364), Expect = 7.633e-36 Identity = 88/262 (33.59%), Postives = 151/262 (57.63%), Query Frame = 3
Query: 615 AVALIKPDAVQAGLVDSIIEEIKANGLEILKQEEKVLSKEEAAEFYKQHEGSDHFEQLIEFMSSGPCMTLVVSKPGDDTGEDLLPEFRALIGPLDVNMAKEEAPESLRAKYGTDSIQ-NAVHSCDSSESAARELAFFFPDFNVPMVERMQKKKRLQRTLALIRPNALKKRRDSILKTIEDSGFLIAMQKEVHLERAQVEELYAEHKDQDYFESLVTNMTCGPSLALCLAREDAVQTWRDMLGPKE-----LVMPPSSQSERG 1382
+AL++P+ D ++ IK +IL+Q + VLS++EA K++E D+F +LIE M+SGP + LV+ + D G L ++ L+GP V A E PESL A++ DS+ N ++ DS E+A RE+ FFP LQ TL LI+P+A ++R+ ILK ++++GF + K++ L Q+E++Y + +D+++ L+ ++ GPS+ + L + +AV WR ++GP + L+ P S +++ G
Sbjct: 318 TLALLRPNLFHER-KDDVLRIIKDEDFKILEQRQVVLSEKEAQALCKEYENEDYFNKLIENMTSGPSLALVLLR---DNG---LQYWKQLLGPRTVEEAIEYFPESLCAQFAMDSLPVNQLYGSDSLETAEREIQHFFP---------------LQSTLGLIKPHATSEQREQILKIVKEAGFDLTQVKKMFLTPEQIEKIYPKVTGKDFYKDLLEMLSVGPSMVMILTKWNAVAEWRRLMGPTDPEEAKLLSPDSIRAQFG 557 HSP 3 Score: 100.908 bits (250), Expect = 1.141e-21 Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query: 1715 QLLLTKDLASMFYKEHEGKDFFSSLTDFMASGPTQFLILSREDAVAGFRSLMGPTAPEQAKIADPNSLRAQFGTDEMKNAVHGCSSMYKALNVINEFFPD 2014
++ LT + Y + GKDF+ L + ++ GP+ +IL++ +AVA +R LMGPT PE+AK+ P+S+RAQFG ++KN VHG S+ Y+A V+N F D
Sbjct: 485 KMFLTPEQIEKIYPKVTGKDFYKDLLEMLSVGPSMVMILTKWNAVAEWRRLMGPTDPEEAKLLSPDSIRAQFGISKLKNIVHGASNAYEAKEVVNRLFED 584 The following BLAST results are available for this feature:
BLAST of TCONS_00003454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.