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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003449 ID=TCONS_00003449|Name=TCONS_00003449|organism=Clytia hemisphaerica|type=transcript|length=3062bpRun BLAST on NCBI protein sequence of TCONS_00003449-protein >TCONS_00003449-protein ID=TCONS_00003449-protein|Name=TCONS_00003449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=885bp MSLSSEQQQLQDFLNKIQLIQFYEIISNKLHITRLEHFEYATESDFTCIGRun BLAST on NCBI transcript from alignment at sc0000028:767477..783297+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003449 ID=TCONS_00003449|Name=TCONS_00003449|organism=Clytia hemisphaerica|type=transcript|length=15821bp|location=Sequence derived from alignment at sc0000028:767477..783297+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:767477..783297+ >TCONS_00003449 ID=TCONS_00003449|Name=TCONS_00003449|organism=Clytia hemisphaerica|type=CDS|length=39870bp|location=Sequence derived from alignment at sc0000028:767477..783297+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003449 vs. Swiss-Prot (Human)
Match: ACK1 (Activated CDC42 kinase 1 OS=Homo sapiens GN=TNK2 PE=1 SV=3) HSP 1 Score: 337.421 bits (864), Expect = 1.501e-98 Identity = 187/458 (40.83%), Postives = 269/458 (58.73%), Query Frame = 1
Query: 94 DFLNKIQLIQFYEIISNKLHITRLEHFEYATESDFTCIGMSMPEIRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDVSLQDNATQSI--QNTNIPSVPEDQKSPRQEAKCLIQEKDIRFLEVIGKGAFGSVRSAEWITVDNEKIFVAVKCIRRTTGNGITDIQNEVVKEASAMSCLNHPNLIRLFGVLISTPMMLVTELAPLGTLLKRLRQERHKFQISILSSFLVQISAGMKYLERNKIVHRDLAARNILLVSYEKIKIGDFGLARPLDDDVEHYVMHPDGLIPFAWCAPECLKYKRFSHASDVWAFGITAYEIFTYGAEPWAGLNGGQILEKIEEPNNERLSCPEHCPREIYSTLYACCWNYREGERSNFQNLEKRLLETLPIEVRATTNSTIGTLTDGLHFIAGDIVTVFNLDSADGIWKGQNRRTGQVGFILSQNVDIHVGIISGAANVGQ 1461
+ L+++QL Q++ + + L++TRL HFEY D IGM P RRL++++K+ K + + +QS + + P P + P Q CLI EKD+R LE +G G+FG VR EW + + VAVKC++ + + ++ ++E +AM L+H NLIRL+GV+++ PM +VTELAPLG+LL RLR+ + F + LS + VQ++ GM YLE + +HRDLAARN+LL + + +KIGDFGL R L + +HYVM +PFAWCAPE LK + FSHASD W FG+T +E+FTYG EPW GLNG QIL KI++ ERL PE CP++IY+ + CW ++ +R F L LLE P ++RA + D LH D++TV + + W+GQN RT VG +NV V +S A ++ Q
Sbjct: 12 ELLSEVQLQQYFLRLRDDLNVTRLSHFEYVKNEDLEKIGMGRPGQRRLWEAVKRRKALCKRKSWMSKVFSGKRL----EAEFPPHHSQSTFRKTSPAPGGPAGE-GPLQSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ-PEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK-EGERLPRPEDCPQDIYNVMVQ-CWAHKPEDRPTFVALRDFLLEAQPTDMRALQDFEE---PDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVG-PFPRNVVTSVAGLS-AQDISQ 456 The following BLAST results are available for this feature:
BLAST of TCONS_00003449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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