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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003443 ID=TCONS_00003443|Name=TCONS_00003443|organism=Clytia hemisphaerica|type=transcript|length=4311bpRun BLAST on NCBI protein sequence of TCONS_00003443-protein >TCONS_00003443-protein ID=TCONS_00003443-protein|Name=TCONS_00003443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp MTSSCLLIQLVTIFVVYVAMVSSEENPIQECMKGIDKQFQQLYLGIKKNPRun BLAST on NCBI transcript from alignment at sc0000028:575552..614894+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003443 ID=TCONS_00003443|Name=TCONS_00003443|organism=Clytia hemisphaerica|type=transcript|length=39343bp|location=Sequence derived from alignment at sc0000028:575552..614894+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:575552..614894+ >TCONS_00003443 ID=TCONS_00003443|Name=TCONS_00003443|organism=Clytia hemisphaerica|type=CDS|length=16692bp|location=Sequence derived from alignment at sc0000028:575552..614894+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003443 vs. Swiss-Prot (Human)
Match: BMPER (BMP-binding endothelial regulator protein OS=Homo sapiens GN=BMPER PE=1 SV=3) HSP 1 Score: 195.282 bits (495), Expect = 2.157e-51 Identity = 130/370 (35.14%), Postives = 183/370 (49.46%), Query Frame = 1
Query: 418 IKKNPCLKCVCNYEGQSQVCRIVRLKCKPL--QCSIQEAQPKQCCRKCKGCTFKGRYYNDLATWKDEEDSCRHYECHEGVVSETTPTCITNCANPVKVPGKCCPVCRGCFHKGRLLSEGERTQ-DGTDVT-CQCQNGTMSCQKTVCPFLHCSNPVKLA--GNRCPTCTRINQPVIINWKEPQCNIKDKTLNSGQSYKLNKCTTCYCQNGTVFCQKEQCKVDKNCPPQDLIQSPKHCCPVCTTKLS------CKYNGKSYKNLETWYLPGCVQCQCNKGLTMCKKQICKKNLQCKDGYKPSFRPGSCCEQCLPETTTCVGFGDPHYRTFDGKAYSYQGVCKYTLAKDCSS-SQLFHIIGRNHARYTHHFSW 1488
I NPC+ CVC + C+ R KC L C++ Q CC +CKGCT++G YN W+ + C +C EGVV+E+ C+ +C NP++ G CCP C GC +G EGE Q +G+ T C C G C + VCP L C + G CP C + Q + + C + ++G S+ + CT C C++ TV C++ K P Q + CC C ++ CK+ K +++ E W C C C KG T C+ + C C G K R G CC C + C FGDPHY TFDG+ +++QG C+Y L KDCSS + F ++ +N AR T FSW
Sbjct: 62 ITDNPCIMCVC--LNKEVTCK--REKCPVLSRDCALAIKQRGACCEQCKGCTYEGNTYNSSFKWQSPAEPCVLRQCQEGVVTESGVRCVVHCKNPLEHLGMCCPTCPGCVFEGVQYQEGEEFQPEGSKCTKCSCTGGRTQCVREVCPILSCPQHLSHIPPGQCCPKC--LGQRKVFDLPFGSCLFRSDVYDNGSSFLYDNCTACTCRDSTVVCKR------KCSHPGGCDQGQEGCCEECLLRVPPEDIKVCKFGNKIFQDGEMWSSINCTICACVKGRTECRNKQCIPISSCPQG-KILNRKG-CCPICTEKPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVKNDARRTRSFSW 417 HSP 2 Score: 187.193 bits (474), Expect = 7.839e-49 Identity = 100/293 (34.13%), Postives = 150/293 (51.19%), Query Frame = 3
Query: 1491 PSQLFHIIGRNHARYTHHFSWIKTVTFVYNNLTIILQQNYKVKINGQPIELPFLYHSIDIRKSKRYIYVYTNDGITIKWDGDSYIDISLPKTFMGRTCGLCGNFNGNPKDDFVLPNRVEALTPNQFGDYWKLKKSKVCKRHANAIRNTPQHAMCFGW--KLFRAHQVCRRAFSDRSIIPCKWKTPSISYFQDCVTDVCQCPTGKQHCECGAIRSYFEKCSNVVKNLKWKRKDKC-DTSCTGGSIYSACGPGCRQTCDSLNLLEPCNKPCVPGCHCPAGFVWHNNKCILQFDCP 2360
P+ F ++ +N AR T FSW K+V V + LQQ+ V+ NG I LP I + V T G+ I WDGDS++++ G+ CGLCGN+NG+ +DD + + + F + W+++ ++ C R + P +C G RAH+ C++ C ++++ CVTD+C+CP K +C C + +Y C + W+ + C T C G++Y CGPGC +TCD+ N + PCNKPCV GCHCPA V H +CI CP
Sbjct: 397 PASPFQVLVKNDARRTRSFSWTKSVELVLGESRVSLQQHLTVRWNGSRIALPCRAPHFHIDLDGYLLKVTTKAGLEISWDGDSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIGGDGNFKFDVDDFAESWRVESNEFCNRP----QRKPVPELCQGTVKVKLRAHRECQK-LKSWEFQTCHSTVDYATFYRSCVTDMCECPVHK-NCYCESFLAYTRACQREGIKVHWEPQQNCAATQCKHGAVYDTCGPGCIKTCDNWNEIGPCNKPCVAGCHCPANLVLHKGRCIKPVLCP 683 The following BLAST results are available for this feature:
BLAST of TCONS_00003443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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