TCONS_00003438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003438
Unique NameTCONS_00003438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003438 ID=TCONS_00003438|Name=TCONS_00003438|organism=Clytia hemisphaerica|type=transcript|length=1615bp
TTTTCTCACACATGTTCTTTTCTCCTCAGATAAATACAAATAATTACCAA
ACAAAATCCAACAAAGTATCTCGTAGTCTAAATAAAATCGAACATAaccg
aaatccataatggcagcTTCAACGACAAGTAGTGGCGGAGATACTGAATT
CCCTTTCTGTGATGAAGTTGGTAAATATGAGAGACTCACCAAAGTTGGTC
AAGGAACATTTGGTGAAGTATTCAAAGCACGAAACCGTAAAACACAACGT
ATAGTGGCTTTAAAGAAAATCTTAATGGAAAACGAAAAAGAAGGGTTTCC
GATTACTGCATTGcgagaaatcaaaattttgaaattacttCAACACGAGA
ATATTGTCAATTTGTTAGAGATTTGTCGGACGAAAGCATCTGGTTTCAAT
CGCCAGAGACCAAGCATTTATTTGGTGTTTGAATTTTGTGAGCATGATCT
AGCTGGTTTACTGTGTAACCGTAACATCAATTTCTCAATGGGAGAAAACA
AGAAGTTAATGCAGATGTTATGCAATGCGTTATATTTTATCCATTTTAAT
AAGATCCTTCACCGAGACATGAAAGCTGCCAATGTATTGATCACCAAAGC
TGGAGTGTTGAAACTGGCAGATTTTGGTCTTGCCCGTGGTATCCATTTGA
ATAGAGATCCAAGCAAGAATAAATACACGAATCGGGTTGTGACATTATGG
TACCGCCCACCCGAACTACTCCTCGGTGAACGTAACTATGGACCGCCCAT
CGACATGTGGGGCGCCGGTTGCATAATGGCGGAGTTATGGACTCGATCAC
CCATCATGCAGGGAAATACAGAGCAAGCACAACTTCATTTGATATCGAGT
TTATGTGGTACTATCAGTAAAGAAGTATGGCCTAATGTTGAAAAACTGGA
GCTCTtttccaaaatggcggattcTTCGACTAAAAGTAAACGCAAGGTAA
AGGAAAGGTTACGTGATTTTGTTAGTGATGCTCACGCTTTAGATTTGGTG
GATAAATTACTAACCTTGGACCCATCGAAACGTTGCGATGCCGACACTGC
TTTAAATCATGATTTCTTTTGGAGTGATCCGTTGCCGTGCGATTTAACAC
GAACTTTATCGAAAGTCACGACTTCCATGTTTGAACTTTTGACGGCGCCG
AGAAACCAAGGCAACCGAAATCGGTTAGGACATTCAAATAGCCAAAGGCC
TGCACAGGCACCCCCTCAGAATATGGGAAGTAATGCGATTTTCGATCGTG
TTTTCTAAACTTTATTGTTTTACGATAATTATTTATAATTTCatgtaata
tattttttcattaattggaatttataatttttgaagcaattGAAAATGAC
TCTATAAAATCCCGAGCCACATTATTTTACATCTCCAATATCCAGAAAGA
ACAGGTTCGAAAGGTTGCTTTAAtcgtaaaataaatattttatttcaatt
tttgaactaTGCAACTTGAATAATACCTCCTGGAGATGGGAGGTTTGCGA
TATAACAGGTATGTCCGAGCCTAAATTCGAAAATCGATCCTTAGagaaaa
actgaatttcgaaaattttgtacGGTTTGACGTTTTCGCCAGAGAGACTT
tccccaaaatttcag
Run BLAST on NCBI

protein sequence of TCONS_00003438-protein

>TCONS_00003438-protein ID=TCONS_00003438-protein|Name=TCONS_00003438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MAASTTSSGGDTEFPFCDEVGKYERLTKVGQGTFGEVFKARNRKTQRIVA
LKKILMENEKEGFPITALREIKILKLLQHENIVNLLEICRTKASGFNRQR
PSIYLVFEFCEHDLAGLLCNRNINFSMGENKKLMQMLCNALYFIHFNKIL
HRDMKAANVLITKAGVLKLADFGLARGIHLNRDPSKNKYTNRVVTLWYRP
PELLLGERNYGPPIDMWGAGCIMAELWTRSPIMQGNTEQAQLHLISSLCG
TISKEVWPNVEKLELFSKMADSSTKSKRKVKERLRDFVSDAHALDLVDKL
LTLDPSKRCDADTALNHDFFWSDPLPCDLTRTLSKVTTSMFELLTAPRNQ
GNRNRLGHSNSQRPAQAPPQNMGSNAIFDRVF
Run BLAST on NCBI

transcript from alignment at sc0000028:539001..542575+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003438 ID=TCONS_00003438|Name=TCONS_00003438|organism=Clytia hemisphaerica|type=transcript|length=3575bp|location=Sequence derived from alignment at sc0000028:539001..542575+ (Clytia hemisphaerica)
TTTTCTCACACATGTTCTTTTCTCCTCAGATAAATACAAATAATTACCAA
ACAAAATCCAACAAAGTATCTCGTAGTCTAAATAAAATCGAACATAaccg
aaatccataatggcagcTTCAACGACAAGTAGTGGCGGAGATACTGAATT
CCCTTTCTGTGATGAAGTTGGTAAATATGAGAGACTCACCAAAGTTGGTC
AAGGAACATTTGGTGAAGTATTCAAAGCACGAAACCGTAAAACACAACGT
ATAGTGGCTTTAAAGAAAATCTTAATGGAAAACGAAAAAGAAGGGTTTCC
GATTACTGCATTGcgagaaatcaaaattttgaaattacttCAACACGAGA
ATATTGTCAATTTGTTAGAGATTTGTCGGACGAAAGCATCTGGTTTCAAT
CGCCAGAGACCAAGCATTTATTTGGTGTTTGAATTTTGTGAGCATGATCT
AGCTGGTTTACTGTGTAACCGTAACATCAATTTCTCAATGGGAGAAAACA
AGAAGTTAATGCAGATGTTATGCAATGCGTTATATTTTATCCATTTTAAT
AAGATCCTTCACCGAGACATGAAAGCTGCCAATGTATTGATCACCAAAGC
TGGAGTGTTGAAACTGGCAGATTTTGGTCTTGCCCGTGGTATCCATTTGA
ATAGAGATCCAAGCAAGAATAAGTAagatgatttctttttgatttatatt
tcatATTACTGGTCGGATgttttgactttaattttaaagcaGTGCCATTT
TTGGATATTCATATTGtcttttgatttgtttgtgtATTCTGTATATTCta
tagtttttaattattttgctTTTTACTCTATCTCAACCAGCGCTTTGTCT
GGAAATATATAACCCCTAAAAGCCCTAATTTCAATTAAAtcagcctaaaa
accagtttaaACCTAACATGGCGGCTACCGACCGGGCTAAATTAAGTCGA
CTCCCCTACTAATTTGACTGATCTAATACCTTAAATTATTGTGTGTCATA
TTTTAATAATAATGTTATAATATCTCATTCATCCCAATAACTATCTACAT
TActgtaccgggtgacccacgaaaaaattcggacgtttctcggcgtcttg
aggccgaacaaatatcccaaagtgcttggagttttattatttagaaagta
gatatcctaacttaaaatccgagccattactttttaaatttgacgcacAA
GTTCCCTAGTTATGAGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCTGATAATACA
CAttttgcccgggggggggggtactaggacaAGATGGGtcacggggatgc
tccgctggtcagggtacctttttaccCTCCAAGAGTCCCAGAtagggttg
caaaaacaccaaaatagaaaaatcagtccctcgtagggtgcctatttttg
gaatatttgggaaaaaagtagaaaatttgagaacattttggaatttcagt
cccattcagggtcacttttttagcaaatttcgagtcccgcgtagggtcca
tttttcgaacctcagcggagcacccctgTCGGTCGACAAGGATAGTaccc
ccctggacattttgTAACAAGCAACCAGGCTGCCAAGGCTCGAGCCctta
aatttgtcaaattttttacaATCTCGTAAGGTAAAACCTTTTTAGATCCA
TGTCAGACAATAGCTCTCGAACCAATAAcaataaatatggtataatatca
gtgTTGGTCAAAAGTGGTCTTCAGAAAATGAGTTAGAATTCTTAGCAACC
CAAGCCCTGATCCGAAAAATGGATTTGCTAAAGTCTAGCTGTTCAACTCT
TAACAATCAACCCAATTATTAAATTGTCGTggtcaaaaccaaaaaaatct
CCATGATTTTAGCCCCCATTGAATTCATTTCATCCATTCTACTTTTTAAC
CTCTTGCTAATAGCAAGCTTAAAAAATTGTAATCCATAAAATGAAATGTG
AAAGGATGTGGATGACTGCATTTATGTCTTATCAAGCGAATATCATTGAT
TTGAGAGAGCTACCCTTTTCCAAAGCGATTGCTTCTATTGGAACCATTTA
AAAAACTCTAACTAATCTAACGATAACCTTACATTCTCTCTCACTAAAGC
TTTGAATATCACAAAGGCGCACCTATAAAGTTGCAAATCCGTCTTTCATT
AAGCTACTAACTATACTAACGACTCTGGACgactaaatttttaagaaatg
tAAAAGACCAAACAATGTATACTAAACTCTAACATAATTTGAATCACGTG
GGCTTTATATACAAAACCTTCTCAACATACAGATACACGAATCGGGTTGT
GACATTATGGTACCGCCCACCCGAACTACTCCTCGGTGAACGTAACTATG
GACCGCCCATCGACATGTGGGGCGCCGGTTGCATAATGGCGGAGTTATGG
ACTCGATCACCCATCATGCAGGGAAATACAGAGCAAGCACAACTTCATTT
GATATCGAGTTTATGTGGTACTATCAGTAAAGAAGTATGGCCTAATGTTG
AAAAACTGGAGCTCTtttccaaaatggcggattcTTCGACTAAAAGTAAA
CGCAAGGTAAAGGAAAGGTTACGTGATTTTGTTAGTGATGCTCACGCTTT
AGATTTGGTGGATAAATTACTAACCTTGGACCCATCGAAACGTTGCGATG
CCGACACTGCTTTAAATCATGATTTCTTTTGGAGTGATCCGTTGCCGTGC
GATTTAACACGAACTTTATCGAAAGTCACGACTTCCATGTTTGAACTTTT
GACGGCGCCGAGAAACCAAGGCAACCGAAATCGGTTAGGACATTCAAATA
GCCAAAGGCCTGCACAGGCACCCCCTCAGAATATGGGAAGTAATGCGATT
TTCGATCGTGTTTTCTAAACTTTATTGTTTTACGATAATTATTTATAATT
TCatgtaatatattttttcattaattggaatttataatttttgaagcaat
tGAAAATGACTCTATAAAATCCCGAGCCACATTATTTTACATCTCCAATA
TCCAGAAAGAACAGGTTCGAAAGGTTGCTTTAAtcgtaaaataaatattt
tatttcaatttttgaactaTGCAACTTGAATAATACCTCCTGGAGATGGG
AGGTTTGCGATATAACAGGTATGTCCGAGCCTAAATTCGAAAATCGATCC
TTAGagaaaaactgaatttcgaaaattttgtacGGTTTGACGTTTTCGCC
AGAGAGACTTtccccaaaatttcag

Coding sequence (CDS) from alignment at sc0000028:539001..542575+

>TCONS_00003438 ID=TCONS_00003438|Name=TCONS_00003438|organism=Clytia hemisphaerica|type=CDS|length=2298bp|location=Sequence derived from alignment at sc0000028:539001..542575+ (Clytia hemisphaerica)
atggcagcTTCAACGACAAGTAGTGGCGGAGATACTGAATTCCCTTTCTG
TGATGAAGTTGGTAAATATGAGAGACTCACCAAAGTTGGTCAAGGAACAT
TTGGTGAAGTATTCAAAGCACGAAACCGTAAAACACAACGTATAGTGGCT
TTAAAGAAAATCTTAATGGAAAACGAAAAAGAAGGGTTTCCGATTACTGC
ATTGcgagaaatcaaaattttgaaattacttCAACACGAGAATATTGTCA
ATTTGTTAGAGATTTGTCGGACGAAAGCATCTGGTTTCAATCGCCAGAGA
CCAAGCATTTATTTGGTGTTTGAATTTTGTGAGCATGATCTAGCTGGTTT
ACTGTGTAACCGTAACATCAATTTCTCAATGGGAGAAAACAAGAAGTTAA
TGCAGATGTTATGCAATGCGTTATATTTTATCCATTTTAATAAGATCCTT
CACCGAGACATGAAAGCTGCCAATGTATTGATCACCAAAGCTGGAGTGTT
GAAACTGGCAGATTTTGGTCTTGCCCGTGGTATCCATTTGAATAGAGATC
CAAGCAAGAATAAATACACGAATCGGGTTGTGACATTATGGTACCGCCCA
CCCGAACTACTCCTCGGTGAACGTAACTATGGACCGCCCATCGACATGTG
GGGCGCCGGTTGCATAATGGCGGAGTTATGGACTCGATCACCCATCATGC
AGGGAAATACAGAGCAAGCACAACTTCATTTGATATCGAGTTTATGTGGT
ACTATCAGTAAAGAAGTATGGCCTAATGTTGAAAAACTGGAGCTCTtttc
caaaatggcggattcTTCGACTAAAAGTAAACGCAAGGTAAAGGAAAGGT
TACGTGATTTTGTTAGTGATGCTCACGCTTTAGATTTGGTGGATAAATTA
CTAACCTTGGACCCATCGAAACGTTGCGATGCCGACACTGCTTTAAATCA
TGATTTCTTTTGGAGTGATCCGTTGCCGTGCGATTTAACACGAACTTTAT
CGAAAGTCACGACTTCCATGTTTGAACTTTTGACGGCGCCGAGAAACCAA
GGCAACCGAAATCGGTTAGGACATTCAAATAGCCAAAGGCCTGCACAGGC
ACCCCCTCAGAATATGGGAAGTAATGCGATTTTCGATCGTGTTTTCTAAa
tggcagcTTCAACGACAAGTAGTGGCGGAGATACTGAATTCCCTTTCTGT
GATGAAGTTGGTAAATATGAGAGACTCACCAAAGTTGGTCAAGGAACATT
TGGTGAAGTATTCAAAGCACGAAACCGTAAAACACAACGTATAGTGGCTT
TAAAGAAAATCTTAATGGAAAACGAAAAAGAAGGGTTTCCGATTACTGCA
TTGcgagaaatcaaaattttgaaattacttCAACACGAGAATATTGTCAA
TTTGTTAGAGATTTGTCGGACGAAAGCATCTGGTTTCAATCGCCAGAGAC
CAAGCATTTATTTGGTGTTTGAATTTTGTGAGCATGATCTAGCTGGTTTA
CTGTGTAACCGTAACATCAATTTCTCAATGGGAGAAAACAAGAAGTTAAT
GCAGATGTTATGCAATGCGTTATATTTTATCCATTTTAATAAGATCCTTC
ACCGAGACATGAAAGCTGCCAATGTATTGATCACCAAAGCTGGAGTGTTG
AAACTGGCAGATTTTGGTCTTGCCCGTGGTATCCATTTGAATAGAGATCC
AAGCAAGAATAAATACACGAATCGGGTTGTGACATTATGGTACCGCCCAC
CCGAACTACTCCTCGGTGAACGTAACTATGGACCGCCCATCGACATGTGG
GGCGCCGGTTGCATAATGGCGGAGTTATGGACTCGATCACCCATCATGCA
GGGAAATACAGAGCAAGCACAACTTCATTTGATATCGAGTTTATGTGGTA
CTATCAGTAAAGAAGTATGGCCTAATGTTGAAAAACTGGAGCTCTtttcc
aaaatggcggattcTTCGACTAAAAGTAAACGCAAGGTAAAGGAAAGGTT
ACGTGATTTTGTTAGTGATGCTCACGCTTTAGATTTGGTGGATAAATTAC
TAACCTTGGACCCATCGAAACGTTGCGATGCCGACACTGCTTTAAATCAT
GATTTCTTTTGGAGTGATCCGTTGCCGTGCGATTTAACACGAACTTTATC
GAAAGTCACGACTTCCATGTTTGAACTTTTGACGGCGCCGAGAAACCAAG
GCAACCGAAATCGGTTAGGACATTCAAATAGCCAAAGGCCTGCACAGGCA
CCCCCTCAGAATATGGGAAGTAATGCGATTTTCGATCGTGTTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001916XLOC_001916Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003438-proteinTCONS_00003438-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003438-exon-sc0000028-1491911889:539001..539672TCONS_00003438-exon-sc0000028-1491911889:539001..539672Clytia hemisphaericaexon
TCONS_00003438-exon-sc0000028-1510915933:539001..539672TCONS_00003438-exon-sc0000028-1510915933:539001..539672Clytia hemisphaericaexon
TCONS_00003438-exon-sc0000028-1575043694:539001..539672TCONS_00003438-exon-sc0000028-1575043694:539001..539672Clytia hemisphaericaexon
TCONS_00003438-exon-sc0000028-1491911889:541633..542575TCONS_00003438-exon-sc0000028-1491911889:541633..542575Clytia hemisphaericaexon
TCONS_00003438-exon-sc0000028-1510915933:541633..542575TCONS_00003438-exon-sc0000028-1510915933:541633..542575Clytia hemisphaericaexon
TCONS_00003438-exon-sc0000028-1575043694:541633..542575TCONS_00003438-exon-sc0000028-1575043694:541633..542575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:539001..542575 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.4317	3.05118	3.91412	3.85731	16.4356	12.2616	12.652	12.7862	8.52664	10.3773	8.53855	5.26	6.39384	4.68813	7.33603	7.82656	10.9298	8.23211	4.4795	13.5853	7.44102	7.28274	10.3576	11.363	8.72352	11.1222	12.3175	14.5487	14.1714	11.4994
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00003438 vs. Swiss-Prot (Human)
Match: CDK9 (Cyclin-dependent kinase 9 OS=Homo sapiens GN=CDK9 PE=1 SV=3)

HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0
Identity = 251/372 (67.47%), Postives = 297/372 (79.84%), Query Frame = 2 
Query:  143 TEFPFCDEVGKYERLTKVGQGTFGEVFKARNRKTQRIVALKKILMENEKEGFPITALREIKILKLLQHENIVNLLEICRTKASGFNRQRPSIYLVFEFCEHDLAGLLCNRNINFSMGENKKLMQMLCNALYFIHFNKILHRDMKAANVLITKAGVLKLADFGLARGIHLNRDPSKNKYTNRVVTLWYRPPELLLGERNYGPPIDMWGAGCIMAELWTRSPIMQGNTEQAQLHLISSLCGTISKEVWPNVEKLELFSKMADSSTKSKRKVKERLRDFVSDAHALDLVDKLLTLDPSKRCDADTALNHDFFWSDPLPCDLTRTLSKVTTSMFELLTAPRNQGNRNRLGHSNSQR-PAQAPPQNMGSNAIFDRVF 1255
             E PFCDEV KYE+L K+GQGTFGEVFKAR+RKT + VALKK+LMENEKEGFPITALREIKIL+LL+HEN+VNL+EICRTKAS +NR + SIYLVF+FCEHDLAGLL N  + F++ E K++MQML N LY+IH NKILHRDMKAANVLIT+ GVLKLADFGLAR   L ++   N+YTNRVVTLWYRPPELLLGER+YGPPID+WGAGCIMAE+WTRSPIMQGNTEQ QL LIS LCG+I+ EVWPNV+  EL+ K+ +     KRKVK+RL+ +V D +ALDL+DKLL LDP++R D+D ALNHDFFWSDP+P DL   LS   TSMFE L  PR +G++     +N  R PA        +   F+RVF
Sbjct:    8 VECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKL-ELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNPATT------NQTEFERVF 372
The following BLAST results are available for this feature:
BLAST of TCONS_00003438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDK90.000e+067.47Cyclin-dependent kinase 9 OS=Homo sapiens GN=CDK9 ... [more]
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