|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003431 ID=TCONS_00003431|Name=TCONS_00003431|organism=Clytia hemisphaerica|type=transcript|length=2639bpRun BLAST on NCBI transcript from alignment at sc0000028:489388..519452+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003431 ID=TCONS_00003431|Name=TCONS_00003431|organism=Clytia hemisphaerica|type=transcript|length=30065bp|location=Sequence derived from alignment at sc0000028:489388..519452+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003431 vs. Swiss-Prot (Human)
Match: ATD3B (ATPase family AAA domain-containing protein 3B OS=Homo sapiens GN=ATAD3B PE=1 SV=1) HSP 1 Score: 687.952 bits (1774), Expect = 0.000e+0 Identity = 339/586 (57.85%), Postives = 448/586 (76.45%), Query Frame = 2
Query: 122 MSWIFGVNKEQAVPQNFEQMMXXXXXXXXXXXXXXXXXXXXXDNKESSKPK-AWSNFDPSGLERAAKAARQLDGAKHAKDALDLARMQESTKQMEHQKELKEYEQNMARLELDKTRLMHEERRKTLSEETKHANQRAQFQDQLARKRYDDQLTQQQRMNEDNLAKQEESVKKQEAMRRATVEHEASLRHTNEMKKLDAKMKAQGAIERENKDIRNEQIKLQAKEHRETVLESLKTAGSILGTGITNFLSDWDKISSTVAGLSLLAVGVYAAKMGTGVTARFVEARLGKPSLVRDTSRLTLFTTLRHPIKAAKRLLVKPEDALKGIILEPKLNLRLHEVALSTANTRANNGMYRNLLLYGPPGTGKTMFAKSLAHHSGLDYAIMTGGDVAPMGRDGVTAMHKIFDWASTSRRGLLLFVDEADAFLRRRSTEHISEDLRSTLNAFLYRTGESSRKFMMVLASNQPDQLDWALSNRIDEVVEFNLPTIEEREQLVRRYFEEYILNAATRGWRSQRIKVEDFDFTAKCREIAERTEGLSGREIAKLGIAWQASTYASAEGILTREILDARVEDMISQHKQKVEWLKEDSP 1876
MSW+FGVNK G + + PK WSNFDP+GLERAAKAAR+L+ +++AK+AL+LA+MQE T Q+E Q +LKEYE + +L+ ++ R EERRKTLSEET+ RAQ+QD+LAR+RY+DQL QQQ +NE+NL KQEESV+KQEAMRRATVE E LRH NEM +++ + +A+ EREN DI EQI+L+A EHR+TVLES++TAG++ G G F++D DK+++TVAGL+LLAVGVY+AK T VT RF+EARLGKPSLVR+TSR+T+ LRHPI+ ++RLL +P+D L+G++L P L R+ ++A++T NT+ N G+YR++LLYGPPGTGKT+FAK LA HSG+DYAIMTGGDVAPMGR+GVTAMHK+FDWA+TSRRGLLLF+DEADAFLR+R+TE IS+DLR+TLNAFLY G+ S KFM+VLASN P+Q D A+++RID +V F+LP EERE+LVR +F+ +L AT G R R+K+ FD+ KC E+A TEG+SGREIA+L ++WQA+ YAS +G+LT ++DA V+D + Q++QK+ WLK + P
Sbjct: 1 MSWLFGVNKGPK-------GEGAGPPPPLPPAQPGAEGGGDRGLGDRPAPKDKWSNFDPTGLERAAKAARELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQVSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKPATEGKR--RLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAYASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGP 577 The following BLAST results are available for this feature:
BLAST of TCONS_00003431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.