|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003415 ID=TCONS_00003415|Name=TCONS_00003415|organism=Clytia hemisphaerica|type=transcript|length=2557bpRun BLAST on NCBI protein sequence of TCONS_00003415-protein >TCONS_00003415-protein ID=TCONS_00003415-protein|Name=TCONS_00003415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp LQISLKTLPFYADYFGIKYPLPKMDLIAIPDFAAGAMENWGLVTYRETCLRun BLAST on NCBI transcript from alignment at sc0000028:309758..322730+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003415 ID=TCONS_00003415|Name=TCONS_00003415|organism=Clytia hemisphaerica|type=transcript|length=12973bp|location=Sequence derived from alignment at sc0000028:309758..322730+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:309758..322730+ >TCONS_00003415 ID=TCONS_00003415|Name=TCONS_00003415|organism=Clytia hemisphaerica|type=CDS|length=20823bp|location=Sequence derived from alignment at sc0000028:309758..322730+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003415 vs. Swiss-Prot (Human)
Match: PSA (Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2) HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0 Identity = 331/631 (52.46%), Postives = 434/631 (68.78%), Query Frame = 1
Query: 1 LQISLKTLPFYADYFGIKYPLPKMDLIAIPDFAAGAMENWGLVTYRETCLLVDEKETSITAKQWVALVVGHEIAHQWFGNLTTMEWWTDLWLNEGFASWIEYLCVDFCCPDFHIWKQFVSTDYTKALELDALKNSHPIEVEVKNPAEIDEIFDAISYSKGASVIRMLHNWIGEKDFKSGLHSYLTTFSYKNGKTKDLWHHLQMKSGKPVSTVMNTWTSQMGYPVISVCDEHTKDGSRILTLDAKKFNSDGSQEGSD-AKWDVPIWVATKSSKGESCYDTLVNGNDFPMNLHIQGCQQDDWIKLNPGQVGFYRINYSPEMLQRLIPSIQ--SLGSVDRLGLESDLFALAYSGYTTTNNFLDILNGYRSENDFVVWSNIDQNLSCLGILLQNTDHYENYKKFVLSFFKPLADKLGWEPQEGESPLTGMLRGKAIRRLGLCGDADVVAKCQQMFQAHVDGSESIPADLRDAVYCTVSRNGDEETFNNMVKLYNDTTHMEEQGRLVRVLGFNQDEAIIQKALDFCMSDKVRSGDTVFALAGCT-GSLLGRRMTWRTVKDNWEELYGRYQGGFLLSRLIKISTENFVTQEEEDDVTNFFSGKEVPAAERVIRQSIESIQCNKRWLARDKDVIIDWL 1881
L+++ KTLPFY DYF + YPLPK+DLIAI DFAAGAMENWGLVTYRET LL+D K + +++QWVALVVGHE+AHQWFGNL TMEWWT LWLNEGFASWIEYLCVD C P++ IW QFVS DYT+A ELDAL NSHPIEV V +P+E+DEIFDAISYSKGASVIRMLH++IG+KDFK G++ YLT F KN T+DLW L+ SGKP++ VMNTWT QMG+P+I V E +D R+L L KKF + GS G D +W VPI ++T ++ L++ + MN+ ++ + D W+KLN G VGFYR YS ML+ L+P I+ SL VDRLGL++DLF+LA +G +T L ++ + +E ++ VWS++ NL L LL +TD YE ++FV F P+ ++LGW+P+ GE L +LRG + +LG G + + ++ F+ HV+G + + ADLR VY TV ++GD T + M+KL+ EE+ R+ RVLG +IQK L F +S++VR DTV + G GS GR+ W+ +KDNWEELY RYQGGFL+SRLIK+S E F + +V FF P+AER I+Q E+I N WL RD + I +L
Sbjct: 282 LEVAAKTLPFYKDYFNVPYPLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFGNLVTMEWWTHLWLNEGFASWIEYLCVDHCFPEYDIWTQFVSADYTRAQELDALDNSHPIEVSVGHPSEVDEIFDAISYSKGASVIRMLHDYIGDKDFKKGMNMYLTKFQQKNAATEDLWESLENASGKPIAAVMNTWTKQMGFPLIYVEAEQVED-DRLLRLSQKKFCAGGSYVGEDCPQWMVPITISTSEDPNQAKLKILMDKPE--MNVVLKNVKPDQWVKLNLGTVGFYRTQYSSAMLESLLPGIRDLSLPPVDRLGLQNDLFSLARAGIISTVEVLKVMEAFVNEPNYTVWSDLSCNLGILSTLLSHTDFYEEIQEFVKDVFSPIGERLGWDPKPGEGHLDALLRGLVLGKLGKAGHKATLEEARRRFKDHVEGKQILSADLRSPVYLTVLKHGDGTTLDIMLKLHKQADMQEEKNRIERVLGATLLPDLIQKVLTFALSEEVRPQDTVSVIGGVAGGSKHGRKAAWKFIKDNWEELYNRYQGGFLISRLIKLSVEGFAVDKMAGEVKAFFESHPAPSAERTIQQCCENILLNAAWLKRDAESIHQYL 909 The following BLAST results are available for this feature:
BLAST of TCONS_00003415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.