TCONS_00003414 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003414
Unique Name	TCONS_00003414
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	937

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000028:299051..309463+
coding sequence from alignment at sc0000028:299051..309463+

transcript sequence

>TCONS_00003414 ID=TCONS_00003414|Name=TCONS_00003414|organism=Clytia hemisphaerica|type=transcript|length=937bp
ACTTGGTTAAGGTGAAAGTGAGCTGGCAGGCTATAGGGCGTTTGGCCGCC
CTTAACGCCATTAGCGCGTTCCATTATAAATGGTAGCCAAGCTACGTGAA
ATACGTGAATTTTACCTGAAGTGAAAGTATCAAGGTTTTAATAAAACCAC
GTTTAAAACTCAGAGAAAGAGTCGTCCGCCACTGCCCTTGCATTTTCTGT
TTTCGTCTCCAATATCATCAACAAACGAttttatttgaaacattttatAA
ATTGAAATGGCAAAGGAATTCAAACGTTTATCAACCTCTGTACGTCCATC
AAACTACAATGTGACGTTTCATCCTAACCTTGAAACATTTAAATTCACTG
GTTCTGAAACTGTGGATATTGAGGTACGCAGAGACACCAAAAGAATTCAA
GTCAATTCATTAGATATTGTGATTGATGAGGCTGAATTCCACAGTGAAAC
AATATCTTACAAATGTGCAGAATCAGACATTGTGTATGACAAAGAAACTG
AAATAGTCATTTTCAACTTCCCAAACACCTTACCAAAAGGCAATGCCACT
CTCAAATTGAAATTTACTGGGGAGTTGAATGACAAAATGAAAGGTTTCTA
TAGAAGCAAATACACAACTCAAGGTGGGGAGGAAAAGTACATGGGTGTCA
CGCAATTTGAgGCAACTGATGCTAGAAGAGCATTTCCTTGCTGGGATGAA
CCTGCAATCAAGGCAACATTCGACATTACAATGATTGCACCTAAAGACCT
TGTTGTTCTCTCTAACATGGACGTCAAAGAAGAGAAGCCATTTGCAGAAG
ATGAAACACACAAAGTTGTCTCCTTCAATAAAAGTCCCATCATGTCCACA
TATCTTGTAGCGTTTGTTGTCNAGCTTTATCGAGCAATTTGGAAgttgat
ttttaaaaactctACAAGGAGAATTGTTGATAATCCG

Run BLAST on NCBI

protein sequence of TCONS_00003414-protein

>TCONS_00003414-protein ID=TCONS_00003414-protein|Name=TCONS_00003414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MAKEFKRLSTSVRPSNYNVTFHPNLETFKFTGSETVDIEVRRDTKRIQVN
SLDIVIDEAEFHSETISYKCAESDIVYDKETEIVIFNFPNTLPKGNATLK
LKFTGELNDKMKGFYRSKYTTQGGEEKYMGVTQFEATDARRAFPCWDEPA
IKATFDITMIAPKDLVVLSNMDVKEEKPFAEDETHKVVSFNKSPIMSTYL
VAFVVXLYRAIWKLIFKNSTRRIVDNP

Run BLAST on NCBI

transcript from alignment at sc0000028:299051..309463+

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003414 ID=TCONS_00003414|Name=TCONS_00003414|organism=Clytia hemisphaerica|type=transcript|length=10413bp|location=Sequence derived from alignment at sc0000028:299051..309463+ (Clytia hemisphaerica)
ACTTGGTTAAGGTGAAAGTGAGCTGGCAGGCTATAGGGCGTTTGGCCGCC
CTTAACGCCATTAGCGCGTTCCATTATAAATGGTAGCCAAGCTACGTGAA
ATACGTGAATTTTACCTGAAGTGAAAGTATCAAGGTTTTAATAAAACCAC
GTTTAAAACTCAGAGAAAGAGTCGTCCGCCACTGCCCTTGCATTTTCTGT
TTTCGTCTCCAATATCATCAACAAACGAttttatttgaaacattttatAA
ATTGGTAAGgaatttttcagatttaaagAAATAACTGACCAATATTTTAA
TGATCTATATTTTAATTAAAGTCCCttatactctaggggctgagttaggt
cccgtatgcgcattGGCGTATAGTGATTTTTTCTtttgatcatgaaagta
tagtccttgaagagtcagaaaacgtgtgtggcgttatttggatcaggcac
aaatttccataatggcggattttagattttcgaattttaCAGTACTCACG
GCAGACATCCTcccattacttttttttttccttctaatTTTGAGTgctgc
tagtaacggcttgttactgtgccgggtgtatactcggcgccttgggcccc
gcagggttgctagtaacggctcgaatttcattcaggttaaaaaaggggta
cttttacccatattataataacattacccccgtcctttttgtcattctat
aagtatttacaaattttgtattCTGCTGTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGTGTTCTgttgtgcgagtgtggctcaac
ggatagcgcgctgggtttctgatcaaagacactttcatttggtgggttcg
aatcccggtcgggccgatatttggagaaagtttgaaaattcaacaaattc
ATAGTGAAGTTACAGTAAAGTTAgtagaaatcagaaaacaagtctcagaa
agtcggaaaatagaaaaggagatagagATAGAAAGGATAGAAAGAGAGGA
AGTGGATAGGAGGATGTCTGCCGTGAGTAAGAttctagattttcaaccct
tttttagccctcttgcttgaaaaaaaatatttttttgactttaaatatag
acatattatataccaatcgatcacaaattttttgctgattaagaaaaagg
tcagaatcatggtctgaaaatttcgttatctggagatatgaagcactttc
gatttcgattttttgaaatgactacctTTGCTTTggccagacgtaattaa
tcgaaccaatcgaacggtatttttaatcaaactttgacgaatttaatcga
actttgttggccaattaatgttcgactaagttcggttgtcgaactttaat
cgaatactcacaaatttctcaaaatacaaagtttgattaagttcgattac
tgaAATTGAACTTAATcggactttttttaaagagaccttgacagttcgat
tagttcaattacattaatcgaacttaatggaactaatcgaacttaatcaa
actttgtcaagtttaatcgaattaaaatttgagaaaactcGAGCAACTGA
AGGCCGCTCCACTTGCACGTAAttcaatcgcactttttgccggcctttga
ggacactttgaggaactttgaagcacccccgcTGATGCAGGTGTGTACCC
TTGCGTCCACCTGACCAGTGGACACCGATCAAACTCCCCGGAACCTccag
gggccgtccacggtggtacccaaatgaggtcatttttcccaattttcaag
cctttcccagccttttaaaggcttcggagcactgatggagggtgcttact
ttgagggagagcaaggcagagggtatctGAAGGGGTCCCAAGGACTATGG
GGGCTGTAGAGGCTTCAATTGGTCTCACCGGCAATTTTTcctggtgagaa
aggggtgtagcaGCCTCGATTGAGGAagtcatttttggcaatttttgccg
gcttttgacagCACTTAGAGGAATTTTGAAGAACCCCCAACAGTGCAGAc
ctgtactctcacatcccccctgaccagtgagcaccAATCGGACCCCCCGg
cacaccggccgggacccccaggggccgtccgcGGTGGTaaccaaaggagg
tcattttttctaattttgaccaattttcaagcctttccgcctttccaagc
cttttaaaggcttcggatgactgatggagggtgctggctttgagggaaag
caaggcagagggtatccaAATTGGTCCAAAGGGGtccgaagggctgtggt
aggctgtgggggctgtagaggcctcgattggtcccaccggggctggttcc
caaaggaggtcatttttcgcaatttttgctgGCTTTTGACGGCACTtaga
ggaactttgaaggacctcAAACGGTGCagacgtgtaccctcacatccccc
tgaccaATCGGACCCCCGGGACCTCGGCCGGGACCCAACATTTCTCgttg
tcgaactttgtcgaacttaatatgttttgtcgaacttaatcgaatactca
caattttagcgacttttgaaaataagttcgattaaagaatttaatcgaac
ttttgtcgttcgattaagttcgacaaagttcgattagttcggtaatcgaa
ctgttcgattaattacgtctggctTTGGTTCCacatttgcgtggctgtaa
catttgattggcatacttaatttacttgaaatttttggagggtcttgcct
accgttcaaataataaaattcaggaaaagttttttttctacatgaatttc
gaaatccataatagtggattcaaaattttctttcgtcacatgggctctta
ggctctgctagcctaagaaaaatattttctgagcTTAGAACCCTGCATag
tatataccaatcgatcaggaattttatgctgattaagaaaaagctCAGAa
ctatggtctgaaaatttcgttatcaggagatacgaagtacttacgttttc
taagttttgaaaacgaaagtacttcatagctcgagatggcaaaattttca
gaccagtgttctgacctttttcttaatcagcataaaatttctgatcaatT
GGTATATAGGGCATATagtatgcagggttttaagctcaaaaaatattttt
cttaggctagcagagcctaagagcccatgtgacgaaaggaAGTTTTgaat
ctgccattatggatttcgtaattcatgtagaaaaataaattttcctgaat
tttattatttgaatggtAGGCAAgcccctccgaaaatttcaagtaaatca
agtaagccaatcaaatgttacagccacgcaaatttggaaccaaaagtagt
cattgcaaaaaatcaaaatcgaaagtgcttcatatctccagataacgaaa
ttttcagaccgtggttctgacatttttcttaatcagcataaaatttgtga
tcgattggtatataatatgtctatgtttaaagttaaaaaaaacatttttt
caagcaagagggctaaaaagggttgaaaatctaaaatccgccattatgga
aatttgtgcctgatccaaataactcCACACatgttttctgactcttcaag
gactatactttcatgatcaaaagaaaaaatcactatacgccgatgcgcat
acgggacctaactcagccccttgAGTATTACCCTTTTTTGATTATGTTGG
TATGGTCTACTTTTATCTTTTGGAACAATCATTTTCTATCTAGAATTTTT
CATGTATATAGCTTTAGACGGCAATCCCAAATctcttcgtttcgcgtcgc
ccgactgCCGACTCCTGAAAATTGAGTCGGAGAGTCGGTAAATTCTTCGG
ACTTTTTGTTTGATGACCTTTCCTTTGCTCAAACATTatattattgccga
tttttgTGAGCGATTTCTAgtgcattcgcagcattttaactttgtttatT
ATTACACGTGCCATTATGTTAGAGGGGGgtcagtcgaaatttcaaaatca
ttttcaaaatgtcaaaccaagttgaatgaaaagcccttatcatcagaaaa
aaaatgaggggtcacttgtCTTTCAACCTTtagtaccgtgagaggtccta
aagccgacaccactgcctaattccgacccccaaataactgttatgaaaaa
aaattctatgtttacaaacattccctctccaagttgaacgataaactatt
gctagaactctcgaaactaaacatctaacaagatagctgtaatgtcaaga
tgtcaattaatgtaattaaaaagtgtgagttgtaaaaataattacctttt
attctggatcagttgctcatgtttaaaacgataacagttttgtaataaaa
gtgacttgtgcgggaaaaatacgaaacaacttggactggtttccatcaag
aaacaaacagactaaattgtaaaaatggcgcgaagttgaaaaaagggcgg
atgcggtagcacttaatttgaataacaaacatcaaatcaatgaggcggca
actatcatcGCCCTCTTTTTACCAcctataagtccggatgtttatttacg
gaaggcccgcaatcggatagctcttcatttaagtgtactctttgacgaca
taatattatctttactagaataggagcaaggtttcatgtaatacataata
attgtaatatacgtcgtctatttgtattcttatcatgtaatatataatat
aatgtaatatacgtcgtctatatgtatccttacacaaagtcctagccccg
caatcaagccaagtgccagtgtaaagtaatagaaaccaggcttgattacg
tagcgtttcaaaatgagcacgctcgtacacagacctcttttatattttcg
tgtgctttggaaaatcaaaacatctcgttaatttttatgatgctgttact
actgttgtcatttatgacgttgtgcaaattgcaataaaaaaatatgtttt
gttataagaagcaattattgttatttggttcaattggttcagtgtatcaa
atctctcagtttagttgacactttggtatcttcgttgcgtcacagcgaaa
ggtttgtttttattttagtttgtatctttgaaagaccccatcggctttag
aCAGTggtgtcggctttaggacctctcacggtattttttcagatattcca
ttttgaagttccatttttttgaagattcctgtTCAAAAACCTCCTGCCAT
CTTCTAGGTAACATGGGGgcactgaaatcgaaagtgttttacaaaaaata
ttctGTGCGGGAGGTTTGGGGCGAGAGTGTTTTTCTGTAGTGCGAGCGAT
AGAGAAGGGGGTCACTATACATTAAACTTCCCTTACAATGGAGCAGATAT
ATATGCTATACATGCTATACACATGTTacgtatgttatatacaaagaata
aagaaatattcgaatatcgatctcacctttgctttaaacagccccctaac
aggaaaatagcttcttcacaatcactatgtcatatctcattttatatcct
gcatcaccttgggtatgataacaattATTGATGAAAATAGCGCCAATGGg
gttatattttataaatgtttcaatatttttccctTATTTATCCCCTGCTT
TTTtctatctcgagctatgaagtactttcgttttcaaaacttagaaaacg
taagtacttcgtatctcctgataacgaaattttcagaccatggttctgac
ctttttcttaatcagcataaaatttctgatcgataatatgcagggtttta
aggtcaaaagatatttttcttaggctagcagagcctaagagcccatgtga
cgaaagaaaattttgaatccgccattatgaatttcgtaattcatgtagaa
aaaaaacttttcctgaattttattattggaacagtaggcaagaccctccg
aaaatttcaagtaaattaagtaagccaattAAATGTTaacagccacgcaa
atctggaaccaaaagtagtcatttcaaaaaatcgaaatcgaaagtgtttc
atatctccagataacgaaattttcagaccatgattctgacctttttctta
atcagcatgaaatttgtgatcgattggtatataatatgtctatgtttaaa
gtcaaaaaatccgccattatggaaatttgtgcctgatccaaataacgcca
cacacgttttctgactcttcaaggactatactttcatgatcaaaagaaaa
aatgactatacgccgatgcacataagggacctaactcagcccctaaataa
taataaaattgatttttgaagccggaactatttaaaaatcgccggaacaa
cctattttcgccggaaagaaagtatttcttgaatttcttaagctgtactt
tatattttttcatgaaattttgcacactgattcaaaatgacaatacctaa
aatgtgacagagcccgatttacaataaaaaaatttttccggctgaaaatg
ccggaaatatgctggaaaagccggttttttgacattttctcgaattttca
tccttagttttttctgattttttgcagaaagatgcgtattcgcaatactc
aaaacatgaccgagttcgatttttgagaaaaaattcttttcggttgaaaa
tgctggaaatctCTGTTTTTGCAGactttcattggattttttccttatat
ttctatgtttttctcacaaaaacattattgatagataacaatgctcacca
tcaacaatcaatgatgaatttattgcgttatgcatttttgctaaacgcta
tattttctgactgattttttttcacttttctcctcgcattactatctaac
tttcatcatcaggtaggtccattcagcatctagcttgttatttGTGCTTT
AATAACAATATCCATAATGACTCACTAGGTCTTACTTGTCATTTTGTGCC
CCCAATGTGGTGAGAGGGATAAGGAATGTTGTTTATTTTAAATATAGTGT
CAACATACTAATAATGTAAACAAAACAGTGAGTTAGATGCTGAAAAAAGA
CAGGAACTGAGCAGATTGAGAAAATTGCACATATTGGgcaacacccctcc
aacccccacctggaAAAAGTCACCCCATATGTATAGCTTTACCCCCACCT
AAAAATGGAGCAAAActcaacccccacctgaatttTAGTCCCCACCTATT
TCAAAGGTAAACTACGTTTTCAAAGATAAAATTGTCTTTATACACATGCT
TTAAAACAAGTTTCCCCATCTATTTTAACCAAATTGTTAGGTTGGATATC
TTTTAAGGTCTGATTCcttggaatttcttttttttaatgatgatCAAGAT
GACGGATTTAAATTGACTCCGTCCAATATGAAGAAAATAAACTAATCCTC
CAACATGGTTACCCTTACCTAAAATTTGGTAGCATCCCAGCCCCCACCAG
cttaaaaatatcttaaaacCTTCAACCCCCCCCCACTATTTTGCAGGGCT
TTATAATCAGTTAGCTTCGTTAGATAAAAAGACTAAATGGAGTGACAAGT
TAGTGATACTTTTTTTACCAGCTCAGTTTGAAAAGTCTGGTAAATGGAAT
GTACTCATTATGTTGATCGTTCCTTGTTTGTTATTGAATTTTGATGAATA
AGTTTACAACATTCAACTTGATaaattttgtttggttttcagttttgtga
aaaaaaattattttatatcattaTAGAAATGGCAAAGGAATTCAAACGTT
TATCAACCTCTGTACGTCCATCAAACTACAATGTGACGTTTCATCCTAAC
CTTGAAACATTTAAATTCACTGGTTCTGAAACTGTGGATATTGAGGTACA
TATTGTATAATTTTTTCAGCAATTTCAAAGGTTAATAAGGAAACATTCTT
ATTATTAACCATGCCTCCCTTTAGCTTGTGTTATACTTTCAAATCTtcac
aatcaaaacaaagatgtcTTTTTAGATGCAAAGCAAAGATgccaaaaatt
cactttttattgttttgatgagACTTGATTTGGATGGATAGCAATATTCC
TAAGTCCTTTCCATTctacttttttttctcaatgacCAAAATTCTcaact
acaacaacaacagttgagttagaatctgagaaaaGTTGCTTTGTATCGTA
CAGTGCTGTTTCCAGCTGTTTCAGCAAAAGCTGAGCTAATCACCTTATTG
CGAGAAAACCTTGCTAAAACCAAAGTATTTTTCTTAATAATGAAGATAGT
ATAACTTTCCATCccttttgattattttattcAGGTACGCAGAGACACCA
AAAGAATTCAAGTCAATTCATTAGATATTGTGATTGATGAGGCTGAATTC
CACAGTGAAACAATATGTAAGTCCCTGTTCTGCCCTGTCCTTGTCTCTAA
AATGAGCTGGAATTATGTATATTCAAATAGTTGTCAATTTCATCGTCAGG
CATCAATCAATACAAAGTAATTTTCTGTTATCGACTACTCAAAAGACTTA
TTAATAATTATTGAGACTTTGGGTAGAATTAATTGTTTGAtagttttcac
ttttcttttgctttGCAGCTTACAAATGTGCAGAATCAGACATTGTGTAT
GACAAAGAAACTGAAATAGTCATTTTCAACTTCCCAAACACCTTACCAAA
AGGCAATGCCACTCTCAAATTGAAATTTACTGGGGAGTTGAATGACAAAA
TGAAAGGTTTCTATAGAAGCAAATACACAACTCAAGGTGGGGAGGAAAAG
TACATGGGTGTCACGCAATTTGAggtaatattttgattttatgattttgt
atatttagtatatttaagTATATTTAATAAAGTCTGATACTCAGATATCA
ATGAAATGGCTTAATGTAGCCTGTCCATATCCATGAAATAAGTTTTATTT
GGTTTAATTTTTGCTTTCGCATAGGCCAGCAACCCGAGTTCTATTCCCAA
CAAGGTTTTTGACTCACTTGGCAAGTGAGTGTACCTGGCCTGGGTCAACC
CATACTGTGTGAGAGGAATAACAACTCTAATACAAGAGTGTGGATAAATA
TGTCAGCATTGTGATGTGGTTACATTCCTATGTGCAAGCTTGCGATTGCT
AACACGCTCTCGCTTTGTTCAAGTGTAATCATCAATCATGATGATACATG
TGTGCTGTGTACACATGATTAGAAACGTCTGGGGTAGCACTATAAATTCT
TTCTCAAGAGAGAAGAACNGTGCTGTGTACACATGATCAGAAACGTCTGG
GGTAGCACTATAAATTCTTTCTCAAGAAAGAAGAACTCTGTCTGGCTTCG
AAAGGAGTAGGACCAATTCCGGTAATATCTAATATCTACTTCATAACATC
TCTATATGTTTATTATAGGCAACTGATGCTAGAAGAGCATTTCCTTGCTG
GGATGAACCTGCAATCAAGGCAACATTCGACATTACAATGATTGCACCTA
AAGACCTTGTTGTTCTCTCTAACATGGTAAGTTgtgataaaaagtttttt
ttatgtatttAAATGCTGAATTAGCCGGAGCTTCTCCTTCTGATTCCaaa
taatagacgatatcggatttagataaatgcaatgcattctggtttctagg
gactctcaaaggaattataatagattagataatagattataattcctttg
agagtccctagaaaccagaatgcattgcatttatctaaatccgatatcgt
ctattgttccCTGATACCATTTTGTATTTGACTGAATTTTAAGATTGTTT
CAACGTGCAGTTGCNCTGATTCCAAATAATTGTTCCCTGATACCATTTTG
TATTTGACTGAATTTTAAGAATGTTTCAACGTGCAGTTGTCTTTTAGGAA
ATATTACTTACTTGTAACCAGTGCTATAGCTGGTATCATGGATGGATTAG
AATTAAACAATCCTTCCATCAAGTTGATTTTTAAAGGGAGACTATTCTTT
CTATATAAAGGTATAAAATCTTTAGCATTTAATTGTTGTATTCAGGACGT
CAAAGAAGAGAAGCCATTTGCAGAAGATGAAACACACAAAGTTGTCTCCT
TCAATAAAAGTCCCATCATGTCCACATATCTTGTAGCGTTTGTTGTCNAG
CTTTATCGAGCAATTTGGAAgttgatttttaaaaactctACAAGGAGAAT
TGTTGATAATCCG

Coding sequence (CDS) from alignment at sc0000028:299051..309463+

>TCONS_00003414 ID=TCONS_00003414|Name=TCONS_00003414|organism=Clytia hemisphaerica|type=CDS|length=3405bp|location=Sequence derived from alignment at sc0000028:299051..309463+ (Clytia hemisphaerica)
ATGGCAAAGGAATTCAAACGTTTATCAACCTCTGTACGTCCATCAAACTA
CAATGTGACGTTTCATCCTAACCTTGAAACATTTAAATTCACTGGTTCTG
AAACTGTGGATATTGAGGTACGCAGAGACACCAAAAGAATTCAAGTCAAT
TCATTAGATATTGTGATTGATGAGGCTGAATTCCACAGTGAAACAATATC
TTACAAATGTGCAGAATCAGACATTGTGTATGACAAAGAAACTGAAATAG
TCATTTTCAACTTCCCAAACACCTTACCAAAAGGCAATGCCACTCTCAAA
TTGAAATTTACTGGGGAGTTGAATGACAAAATGAAAGGTTTCTATAGAAG
CAAATACACAACTCAAGGTGGGGAGGAAAAGTACATGGGTGTCACGCAAT
TTGAgGCAACTGATGCTAGAAGAGCATTTCCTTGCTGGGATGAACCTGCA
ATCAAGGCAACATTCGACATTACAATGATTGCACCTAAAGACCTTGTTGT
TCTCTCTAACATGGACGTCAAAGAAGAGAAGCCATTTGCAGAAGATGAAA
CACACAAAGTTGTCTCCTTCAATAAAAGTCCCATCATGTCCACATATCTT
GTAGCGTTTGTTGTCNAGCTTTATCGAGCAATTTGGAAgttgatttttaa
aaactctACAAGGAGAATTGTTGATAATCCGATGGCAAAGGAATTCAAAC
GTTTATCAACCTCTGTACGTCCATCAAACTACAATGTGACGTTTCATCCT
AACCTTGAAACATTTAAATTCACTGGTTCTGAAACTGTGGATATTGAGGT
ACGCAGAGACACCAAAAGAATTCAAGTCAATTCATTAGATATTGTGATTG
ATGAGGCTGAATTCCACAGTGAAACAATATCTTACAAATGTGCAGAATCA
GACATTGTGTATGACAAAGAAACTGAAATAGTCATTTTCAACTTCCCAAA
CACCTTACCAAAAGGCAATGCCACTCTCAAATTGAAATTTACTGGGGAGT
TGAATGACAAAATGAAAGGTTTCTATAGAAGCAAATACACAACTCAAGGT
GGGGAGGAAAAGTACATGGGTGTCACGCAATTTGAgGCAACTGATGCTAG
AAGAGCATTTCCTTGCTGGGATGAACCTGCAATCAAGGCAACATTCGACA
TTACAATGATTGCACCTAAAGACCTTGTTGTTCTCTCTAACATGGACGTC
AAAGAAGAGAAGCCATTTGCAGAAGATGAAACACACAAAGTTGTCTCCTT
CAATAAAAGTCCCATCATGTCCACATATCTTGTAGCGTTTGTTGTCNAGC
TTTATCGAGCAATTTGGAAgttgatttttaaaaactctACAAGGAGAATT
GTTGATAATCCGATGGCAAAGGAATTCAAACGTTTATCAACCTCTGTACG
TCCATCAAACTACAATGTGACGTTTCATCCTAACCTTGAAACATTTAAAT
TCACTGGTTCTGAAACTGTGGATATTGAGGTACGCAGAGACACCAAAAGA
ATTCAAGTCAATTCATTAGATATTGTGATTGATGAGGCTGAATTCCACAG
TGAAACAATATCTTACAAATGTGCAGAATCAGACATTGTGTATGACAAAG
AAACTGAAATAGTCATTTTCAACTTCCCAAACACCTTACCAAAAGGCAAT
GCCACTCTCAAATTGAAATTTACTGGGGAGTTGAATGACAAAATGAAAGG
TTTCTATAGAAGCAAATACACAACTCAAGGTGGGGAGGAAAAGTACATGG
GTGTCACGCAATTTGAgGCAACTGATGCTAGAAGAGCATTTCCTTGCTGG
GATGAACCTGCAATCAAGGCAACATTCGACATTACAATGATTGCACCTAA
AGACCTTGTTGTTCTCTCTAACATGGACGTCAAAGAAGAGAAGCCATTTG
CAGAAGATGAAACACACAAAGTTGTCTCCTTCAATAAAAGTCCCATCATG
TCCACATATCTTGTAGCGTTTGTTGTCNAGCTTTATCGAGCAATTTGGAA
gttgatttttaaaaactctACAAGGAGAATTGTTGATAATCCGATGGCAA
AGGAATTCAAACGTTTATCAACCTCTGTACGTCCATCAAACTACAATGTG
ACGTTTCATCCTAACCTTGAAACATTTAAATTCACTGGTTCTGAAACTGT
GGATATTGAGGTACGCAGAGACACCAAAAGAATTCAAGTCAATTCATTAG
ATATTGTGATTGATGAGGCTGAATTCCACAGTGAAACAATATCTTACAAA
TGTGCAGAATCAGACATTGTGTATGACAAAGAAACTGAAATAGTCATTTT
CAACTTCCCAAACACCTTACCAAAAGGCAATGCCACTCTCAAATTGAAAT
TTACTGGGGAGTTGAATGACAAAATGAAAGGTTTCTATAGAAGCAAATAC
ACAACTCAAGGTGGGGAGGAAAAGTACATGGGTGTCACGCAATTTGAgGC
AACTGATGCTAGAAGAGCATTTCCTTGCTGGGATGAACCTGCAATCAAGG
CAACATTCGACATTACAATGATTGCACCTAAAGACCTTGTTGTTCTCTCT
AACATGGACGTCAAAGAAGAGAAGCCATTTGCAGAAGATGAAACACACAA
AGTTGTCTCCTTCAATAAAAGTCCCATCATGTCCACATATCTTGTAGCGT
TTGTTGTCNAGCTTTATCGAGCAATTTGGAAgttgatttttaaaaactct
ACAAGGAGAATTGTTGATAATCCGATGGCAAAGGAATTCAAACGTTTATC
AACCTCTGTACGTCCATCAAACTACAATGTGACGTTTCATCCTAACCTTG
AAACATTTAAATTCACTGGTTCTGAAACTGTGGATATTGAGGTACGCAGA
GACACCAAAAGAATTCAAGTCAATTCATTAGATATTGTGATTGATGAGGC
TGAATTCCACAGTGAAACAATATCTTACAAATGTGCAGAATCAGACATTG
TGTATGACAAAGAAACTGAAATAGTCATTTTCAACTTCCCAAACACCTTA
CCAAAAGGCAATGCCACTCTCAAATTGAAATTTACTGGGGAGTTGAATGA
CAAAATGAAAGGTTTCTATAGAAGCAAATACACAACTCAAGGTGGGGAGG
AAAAGTACATGGGTGTCACGCAATTTGAgGCAACTGATGCTAGAAGAGCA
TTTCCTTGCTGGGATGAACCTGCAATCAAGGCAACATTCGACATTACAAT
GATTGCACCTAAAGACCTTGTTGTTCTCTCTAACATGGACGTCAAAGAAG
AGAAGCCATTTGCAGAAGATGAAACACACAAAGTTGTCTCCTTCAATAAA
AGTCCCATCATGTCCACATATCTTGTAGCGTTTGTTGTCNAGCTTTATCG
AGCAATTTGGAAgttgatttttaaaaactctACAAGGAGAATTGTTGATA
ATCCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001908	XLOC_001908	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003414-protein	TCONS_00003414-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000028	supercontig	sc0000028:299051..309463 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
120.566	126.505	114.219	99.923	40.4831	34.1196	45.4243	51.852	42.9556	53.9704	59.5935	47.9051	67.4471	55.975	82.6018	106.195	48.7662	53.2086	31.7561	42.1751	34.4904	36.6111	57.0499	61.417	51.1715	55.0087	25.9941	18.328	39.9184	35.6005

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR014782	Peptidase_M1_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0008237	metallopeptidase activity
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008270	zinc ion binding

Blast

[Close]

BLAST of TCONS_00003414 vs. Swiss-Prot (Human)
Match: PSA (Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 1.527e-62
Identity = 109/206 (52.91%), Postives = 135/206 (65.53%), Query Frame = 2

Query:  263 KEFKRLSTSVRPSNYNVTFHPNLETFKFTGSETVDIEVRRDTKRIQVNSLDIVIDEAEFHSETISYKCAESDIVYDKETEIVIFNFPNTLPKGNATLKLKFTGELNDKMKGFYRSKYTTQGGEEKYMGVTQFEATDARRAFPCWDEPAIKATFDITMIAPKDLVVLSNMDVKEEKPFAEDETHKVVSFNKSPIMSTYLVAFVVXLY 880
            + F+RL   V P NY++   P+L  F F G      +VR+ T +I +N  DI I  A +  E    +   +   Y  E E V  +FP+TL  G  TLK+ F GELNDKMKGFYRSKYTT  GE +Y  VTQFEATDARRAFPCWDEPAIKATFDI+++ PKD V LSNM+V + KP+ +DE    V F ++P+MSTYLVAFVV  Y
Sbjct:   49 RPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEG-DEEIHATGFNYQNEDEKVTLSFPSTLQTGTGTLKIDFVGELNDKMKGFYRSKYTTPSGEVRYAAVTQFEATDARRAFPCWDEPAIKATFDISLVVPKDRVALSNMNVIDRKPYPDDENLVEVKFARTPVMSTYLVAFVVGEY 253

The following BLAST results are available for this feature:

BLAST of TCONS_00003414 vs. Swiss-Prot (Human)

BLAST of TCONS_00003414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PSA	1.527e-62	52.91	Puromycin-sensitive aminopeptidase OS=Homo sapiens...	[more]

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TCONS_00003414 (transcript) - C. hemisphaerica