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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003409 ID=TCONS_00003409|Name=TCONS_00003409|organism=Clytia hemisphaerica|type=transcript|length=3141bpRun BLAST on NCBI protein sequence of TCONS_00003409-protein >TCONS_00003409-protein ID=TCONS_00003409-protein|Name=TCONS_00003409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp MSKSSSWGFHANITHERVEYVLKQYGIHGNYVCRRSQTTPGSYTLSVRRRRun BLAST on NCBI transcript from alignment at sc0000028:83034..94775+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003409 ID=TCONS_00003409|Name=TCONS_00003409|organism=Clytia hemisphaerica|type=transcript|length=11742bp|location=Sequence derived from alignment at sc0000028:83034..94775+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:83034..94775+ >TCONS_00003409 ID=TCONS_00003409|Name=TCONS_00003409|organism=Clytia hemisphaerica|type=CDS|length=24750bp|location=Sequence derived from alignment at sc0000028:83034..94775+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003409 vs. Swiss-Prot (Human)
Match: PTN11 (Tyrosine-protein phosphatase non-receptor type 11 OS=Homo sapiens GN=PTPN11 PE=1 SV=2) HSP 1 Score: 388.652 bits (997), Expect = 1.373e-121 Identity = 227/556 (40.83%), Postives = 328/556 (58.99%), Query Frame = 1
Query: 373 SSSWGFHANITHERVEYVLKQYGIHGNYVCRRSQTTPGSYTLSVRRRNDINHYKIYNDGESFELYDGDGFASVPDLIDYYRRNPDNFVDKDHRIVELTEPLIMEDDLGPVLDQESWYFGNISGDEARQFLHERGSIGSYLVRESRTNPGFYVLSVRRS--------GSSNMIEFLISNSEGKFHISSTKRKFKTINELLEFYKTHPLIDKHTDQEIQLQEPL-------CETAERVRNDIRIAQ-----------EFEWLQFEDKTNTNPKTAGLMACNKRKNRYKNILPFDCTRVVLNNIDPTIPGSDYINASFIF--------DDQSSGLFIAAQGCLKATVDDFWHMVYQENSRIIIMVTNEIEKAKIKCVRYWPD-YGLTSLVDGRELTNVDETSTGDYVIREFELEEDPLPGRDTRRLRKIFHYQYIGWPDHGTPGDPASLLDMLAQIDTTQKTFQYPGPPVVHCSAGIGRTGTVIVINMLINLLQLKGGVDEKDVPQTVQKVRCQRGGMVQTEAQYRFIYRALVVYMKRLREQQLTQQKNENQKMDYGNI 1935
S W FH NIT E +L G+ G+++ R S++ PG +TLSVRR + H KI N G+ ++LY G+ FA++ +L+ YY + +K+ ++EL PL D E W+ G++SG EA + L E+G GS+LVRES+++PG +VLSVR G S + +I E K+ + +R F ++ +L+E YK +P+++ +QL++PL E RVR ++A+ EFE LQ ++ + G NK KNRYKNILPFD TRVVL++ DP P SDYINA+ I + + +IA QGCL+ TV+DFW MV+QENSR+I+M T E+E+ K KCV+YWPD Y L R + NV E++ DY +RE +L + R ++ Y + WPDHG P DP +LD L ++ Q++ GP VVHCSAGIGRTGT IVI++LI++++ KG + DVP+T+Q VR QR GMVQTEAQYRFIY A+ Y++ L+ + +QK++ + +Y NI
Sbjct: 3 SRRW-FHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTS-----ERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGER-FDSLTDLVEHYKKNPMVET-LGTVLQLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMR-VRNVKESAAHDYTLRELKLSKVGQALLQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRRIEEEQKSKRKGHEYTNI 549 The following BLAST results are available for this feature:
BLAST of TCONS_00003409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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