TCONS_00003405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003405
Unique NameTCONS_00003405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003405 ID=TCONS_00003405|Name=TCONS_00003405|organism=Clytia hemisphaerica|type=transcript|length=680bp
TAAAACAGTCGGAGCTCATATTTTCAGTGACGCATCCAAATATATGTTTG
GGGCGGCGGTATATCTACGATTCGTATTGGCGAGTCTGGTAGTGTAAAAA
CAGCCCTTGTTTCGTCCAAGAATCGAATTATATCTGCTAAAACCTTAAAG
TCAAAACACAATACAACTCCCAGAAATGAATTAAATGGTATCCTTTTGGC
AACTTCGCATGGTCCTGCGGTTATAGAAGCCCTTAAGAACTCTTACAATA
TTTCTGAAACTTTCTACTGGACAGATTCGTCCATTGCTTGTGCGTGGGTC
CAGAATGAGAAAAAGAATGAGGACAGTTATGTAGAGGATAGAGTGAAGAA
AATTAAGACTGTCATTACAAAGCCTCTATCCCATCTAAAACTTGTACCTT
CAGAGATTAATCCCTCTGACATTTTGACAAAGGTACATTACCCTCTCGGT
CTTGCANTGAAGAAAATTAAGACTGTCATTAAAAAGCCTCTATCCCACCT
AAAACTTGTACCTTCAGAGATTAATCCTTCTGACATTTTGACAAAGGTAC
ATTACCCTCTCGGTCTTGCTCGTAATGAATTGTGGTTTTACGGACCTCAG
TTCTTGACTGAGAAGGAGAATGCCTGGCCAGATTTAAAACCAGGTTTTAG
TTTTAAAACTAATACAACTTCTGTTACAGC
Run BLAST on NCBI

transcript from alignment at sc0000026:979880..980559

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003405 ID=TCONS_00003405|Name=TCONS_00003405|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at sc0000026:979880..980559 (Clytia hemisphaerica)
GCTGTAACAGAAGTTGTATTAGTTTTAAAACTAAAACCTGGTTTTAAATC
TGGCCAGGCATTCTCCTTCTCAGTCAAGAACTGAGGTCCGTAAAACCACA
ATTCATTACGAGCAAGACCGAGAGGGTAATGTACCTTTGTCAAAATGTCA
GAAGGATTAATCTCTGAAGGTACAAGTTTTAGGTGGGATAGAGGCTTTTT
AATGACAGTCTTAATTTTCTTCANTGCAAGACCGAGAGGGTAATGTACCT
TTGTCAAAATGTCAGAGGGATTAATCTCTGAAGGTACAAGTTTTAGATGG
GATAGAGGCTTTGTAATGACAGTCTTAATTTTCTTCACTCTATCCTCTAC
ATAACTGTCCTCATTCTTTTTCTCATTCTGGACCCACGCACAAGCAATGG
ACGAATCTGTCCAGTAGAAAGTTTCAGAAATATTGTAAGAGTTCTTAAGG
GCTTCTATAACCGCAGGACCATGCGAAGTTGCCAAAAGGATACCATTTAA
TTCATTTCTGGGAGTTGTATTGTGTTTTGACTTTAAGGTTTTAGCAGATA
TAATTCGATTCTTGGACGAAACAAGGGCTGTTTTTACACTACCAGACTCG
CCAATACGAATCGTAGATATACCGCCGCCCCAAACATATATTTGGATGCG
TCACTGAAAATATGAGCTCCGACTGTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001900XLOC_001900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003405-exon-sc0000026-1491911889:979880..980559TCONS_00003405-exon-sc0000026-1491911889:979880..980559Clytia hemisphaericaexon
TCONS_00003405-exon-sc0000026-1510915933:979880..980559TCONS_00003405-exon-sc0000026-1510915933:979880..980559Clytia hemisphaericaexon
TCONS_00003405-exon-sc0000026-1575043694:979880..980559TCONS_00003405-exon-sc0000026-1575043694:979880..980559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:979880..980559 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0834391	0.922929	0.872044	1.00428	0.495524	0.242355	0.589639	0.470423	0.402487	0.479012	0.411574	0.443995	0.357275	0	0.319207	0.554545	0	0	0	0	0	0.304483	0	0	0	0.169299	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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