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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003402 ID=TCONS_00003402|Name=TCONS_00003402|organism=Clytia hemisphaerica|type=transcript|length=1816bp
tctaaatcatttttaaatgcattcgaaattcattacAATTTCATACAATA
TTTATTACACTCGTGAGCTGGTGTCAGCAAAATATCTGGTTTTACCCGAT
TTCAATTATTCGGGTTATTATTACTACTATCGGGtgatatgacgtcatca
ttactTAAACTACAGTCTAATGATGATTTGGGTCCAGCCCCTTTAAGACC
TCTCGAAGAGGACGAATCGAAACCAGCGTGTTTCACATTGAACAGTTTGT
AGACTCCTTTGCGAATACCAGGTTGTTTGAAGAAATAAATGATGGGATTA
CAACAACTGTTCATCGAGCCAGCAAAACACGCGAACACATATAAGTTCTG
AATGACTTGTGGTCTTGTGTACCCAAAAGAGTCATTTAAGAGATCATTCA
CGGACCAAATACTCGACGGTACTAAGCAAACACAATAAGCCAATATTAAA
ACACTGACTGAACGCGCTAACCTGATATTTTTCTTCTCATTTCGGGAACG
TGAGGCGCGTAAATTTTCACTGATATCAGGTGTGTCTGAAATAGAGCGCC
CGTGCGCCCCGATCCGGGCGGAGCTCTTTTGGATGCATTTCATAATACGG
TAGTATGTGAATAATAGGATAATAAGCGGTCCAAGTGTTATAACGATGAC
GCAGTACAGAAACGGACCTTTNTAaatgcattcgaaattcattacAATTT
CATACAATATTTATTACACTCGTGAGCTGGTGTCAGCAAAATATCTGGTT
TTACCCGATTTCCATTATTCGGGTTATTATTACTACTATCGGGtgatatg
acgtcatcattactTAAACTACAGTCTAATGATGATTTGGGTCCAGCCCC
TTTAAGACCTCTCGAAGAGGACGAATCGAAACCAGCGTGTTTCACATTGA
ACAGTTTGTAGACTCCTTTGCGAATACCAGGTTGTTTGAAGAAATAAATG
ATGGGATTACAACAACTGTTCATCGAGCCAGCAAAACACGCGAACACATA
TAAGTTCTGAATGACTTGTGGTCTTGTGTACCCAAAAGAGTCATTTAAGA
GATCATTCACGGACCAAATACTCGACGGTACTAAGCAAACACAATAAGCC
AATATTAAAACACTGACTGAACGCGCTAACCTGATATTTTTCTTCTCATT
TCGGGAACGTGAGGCGCGTAAATTTTCACTGATATCAGGTGTGTCTGAAA
TAGAGCGCCCGTGCGCCCCGATCCGGGCGGAGCTTTTTTGGATGCATTTC
ATAATACGGTAGTATGTGAATAATAGGATAATAAGCGGTCCAAGTGTTAT
AACGATGACGCAGTACAAAAACGGACCTTTCCCTAAAAACCGTAATGCAG
GTGATACCGCAGGAAAAATCCAGGATAAAGCAATTAGGATTCCGACACGG
CGCGGACTCATGATTCTCTTGTGTTTACCAACTTTAGTCATTAGGATATA
CCGATCGTAAGAAACGACGCCGAGCGTCATTAACGACGAACCGATCGTAA
CTGTCGTGATGTATTCCCTCATGTAATCGTAAGCACAATTCTGCAATAAA
TCGGTGTACAATAATTGGATGGAGAAGATGGGAAATAATACGGCTCCTAC
TAGAGTATCGGAGATAGCTAAGGAGGTTAGAATGGTGTTCGATCTAGATC
GGTAGCCAGGCTTCCATAAGATGATTAGAACAGTGATATTACCGAAGGTT
GCAAAGAGGGCTGCCAATACAGAAAGTGTTCCATAGATGTAAGCTATAGG
CGTTGACAAATGATTCATACGTAGCACAcattccattgttttgttgttgt
tattgttttgtGAATG Run BLAST on NCBI protein sequence of TCONS_00003402-protein >TCONS_00003402-protein ID=TCONS_00003402-protein|Name=TCONS_00003402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
HSQNNNNNKTMECVLRMNHLSTPIAYIYGTLSVLAALFATFGNITVLIIL
WKPGYRSRSNTILTSLAISDTLVGAVLFPIFSIQLLYTDLLQNCAYDYMR
EYITTVTIGSSLMTLGVVSYDRYILMTKVGKHKRIMSPRRVGILIALSWI
FPAVSPALRFLGKGPFLYCVIVITLGPLIILLFTYYRIMKCIQKSSARIG
AHGRSISDTPDISENLRASRSRNEKKNIRLARSVSVLILAYCVCLVPSSI
WSVNDLLNDSFGYTRPQVIQNLYVFACFAGSMNSCCNPIIYFFKQPGIRK
GVYKLFNVKHAGFDSSSSRGLKGAGPKSSLDCSLSNDDVISPDSSNNNPN
NGNRVKPDILLTPAHECNKYCMKL Run BLAST on NCBI transcript from alignment at sc0000026:801662..803477 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003402 ID=TCONS_00003402|Name=TCONS_00003402|organism=Clytia hemisphaerica|type=transcript|length=1816bp|location=Sequence derived from alignment at sc0000026:801662..803477 (Clytia hemisphaerica)
CATTCacaaaacaataacaacaacaaaacaatggaatgTGTGCTACGTAT
GAATCATTTGTCAACGCCTATAGCTTACATCTATGGAACACTTTCTGTAT
TGGCAGCCCTCTTTGCAACCTTCGGTAATATCACTGTTCTAATCATCTTA
TGGAAGCCTGGCTACCGATCTAGATCGAACACCATTCTAACCTCCTTAGC
TATCTCCGATACTCTAGTAGGAGCCGTATTATTTCCCATCTTCTCCATCC
AATTATTGTACACCGATTTATTGCAGAATTGTGCTTACGATTACATGAGG
GAATACATCACGACAGTTACGATCGGTTCGTCGTTAATGACGCTCGGCGT
CGTTTCTTACGATCGGTATATCCTAATGACTAAAGTTGGTAAACACAAGA
GAATCATGAGTCCGCGCCGTGTCGGAATCCTAATTGCTTTATCCTGGATT
TTTCCTGCGGTATCACCTGCATTACGGTTTTTAGGGAAAGGTCCGTTTTT
GTACTGCGTCATCGTTATAACACTTGGACCGCTTATTATCCTATTATTCA
CATACTACCGTATTATGAAATGCATCCAAAAAAGCTCCGCCCGGATCGGG
GCGCACGGGCGCTCTATTTCAGACACACCTGATATCAGTGAAAATTTACG
CGCCTCACGTTCCCGAAATGAGAAGAAAAATATCAGGTTAGCGCGTTCAG
TCAGTGTTTTAATATTGGCTTATTGTGTTTGCTTAGTACCGTCGAGTATT
TGGTCCGTGAATGATCTCTTAAATGACTCTTTTGGGTACACAAGACCACA
AGTCATTCAGAACTTATATGTGTTCGCGTGTTTTGCTGGCTCGATGAACA
GTTGTTGTAATCCCATCATTTATTTCTTCAAACAACCTGGTATTCGCAAA
GGAGTCTACAAACTGTTCAATGTGAAACACGCTGGTTTCGATTCGTCCTC
TTCGAGAGGTCTTAAAGGGGCTGGACCCAAATCATCATTAGACTGTAGTT
TAagtaatgatgacgtcatatcaCCCGATAGTAGTAATAATAACCCGAAT
AATGGAAATCGGGTAAAACCAGATATTTTGCTGACACCAGCTCACGAGTG
TAATAAATATTGTATGAAATTgtaatgaatttcgaatgcattTANAAAGG
TCCGTTTCTGTACTGCGTCATCGTTATAACACTTGGACCGCTTATTATCC
TATTATTCACATACTACCGTATTATGAAATGCATCCAAAAGAGCTCCGCC
CGGATCGGGGCGCACGGGCGCTCTATTTCAGACACACCTGATATCAGTGA
AAATTTACGCGCCTCACGTTCCCGAAATGAGAAGAAAAATATCAGGTTAG
CGCGTTCAGTCAGTGTTTTAATATTGGCTTATTGTGTTTGCTTAGTACCG
TCGAGTATTTGGTCCGTGAATGATCTCTTAAATGACTCTTTTGGGTACAC
AAGACCACAAGTCATTCAGAACTTATATGTGTTCGCGTGTTTTGCTGGCT
CGATGAACAGTTGTTGTAATCCCATCATTTATTTCTTCAAACAACCTGGT
ATTCGCAAAGGAGTCTACAAACTGTTCAATGTGAAACACGCTGGTTTCGA
TTCGTCCTCTTCGAGAGGTCTTAAAGGGGCTGGACCCAAATCATCATTAG
ACTGTAGTTTAagtaatgatgacgtcatatcaCCCGATAGTAGTAATAAT
AACCCGAATAATTGAAATCGGGTAAAACCAGATATTTTGCTGACACCAGC
TCACGAGTGTAATAAATATTGTATGAAATTgtaatgaatttcgaatgcat
ttaaaaatgatttaga Coding sequence (CDS) from alignment at sc0000026:801662..803477 >TCONS_00003402 ID=TCONS_00003402|Name=TCONS_00003402|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0000026:801662..803477 (Clytia hemisphaerica)
CATTCacaaaacaataacaacaacaaaacaatggaatgTGTGCTACGTAT
GAATCATTTGTCAACGCCTATAGCTTACATCTATGGAACACTTTCTGTAT
TGGCAGCCCTCTTTGCAACCTTCGGTAATATCACTGTTCTAATCATCTTA
TGGAAGCCTGGCTACCGATCTAGATCGAACACCATTCTAACCTCCTTAGC
TATCTCCGATACTCTAGTAGGAGCCGTATTATTTCCCATCTTCTCCATCC
AATTATTGTACACCGATTTATTGCAGAATTGTGCTTACGATTACATGAGG
GAATACATCACGACAGTTACGATCGGTTCGTCGTTAATGACGCTCGGCGT
CGTTTCTTACGATCGGTATATCCTAATGACTAAAGTTGGTAAACACAAGA
GAATCATGAGTCCGCGCCGTGTCGGAATCCTAATTGCTTTATCCTGGATT
TTTCCTGCGGTATCACCTGCATTACGGTTTTTAGGGAAAGGTCCGTTTTT
GTACTGCGTCATCGTTATAACACTTGGACCGCTTATTATCCTATTATTCA
CATACTACCGTATTATGAAATGCATCCAAAAAAGCTCCGCCCGGATCGGG
GCGCACGGGCGCTCTATTTCAGACACACCTGATATCAGTGAAAATTTACG
CGCCTCACGTTCCCGAAATGAGAAGAAAAATATCAGGTTAGCGCGTTCAG
TCAGTGTTTTAATATTGGCTTATTGTGTTTGCTTAGTACCGTCGAGTATT
TGGTCCGTGAATGATCTCTTAAATGACTCTTTTGGGTACACAAGACCACA
AGTCATTCAGAACTTATATGTGTTCGCGTGTTTTGCTGGCTCGATGAACA
GTTGTTGTAATCCCATCATTTATTTCTTCAAACAACCTGGTATTCGCAAA
GGAGTCTACAAACTGTTCAATGTGAAACACGCTGGTTTCGATTCGTCCTC
TTCGAGAGGTCTTAAAGGGGCTGGACCCAAATCATCATTAGACTGTAGTT
TAagtaatgatgacgtcatatcaCCCGATAGTAGTAATAATAACCCGAAT
AATGGAAATCGGGTAAAACCAGATATTTTGCTGACACCAGCTCACGAGTG
TAATAAATATTGTATGAAATTgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003402-exon-sc0000026-1491911889:801662..803477 | TCONS_00003402-exon-sc0000026-1491911889:801662..803477 | Clytia hemisphaerica | exon |
| TCONS_00003402-exon-sc0000026-1510915933:801662..803477 | TCONS_00003402-exon-sc0000026-1510915933:801662..803477 | Clytia hemisphaerica | exon |
| TCONS_00003402-exon-sc0000026-1575043694:801662..803477 | TCONS_00003402-exon-sc0000026-1575043694:801662..803477 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:801662..803477 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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