TCONS_00003400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003400
Unique NameTCONS_00003400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003400 ID=TCONS_00003400|Name=TCONS_00003400|organism=Clytia hemisphaerica|type=transcript|length=275bp
NNCATTCTGGGGTCGCGGCCGTGGAGTAAGAAAAAGGGAGTTTCTCTGGT
AGTGGAATGGGGGGTAACTCTATAAGCAAATAGGGCAGAGTTAATGTGGG
TATCCTAGTCGTCCTGAAATGCGTCAGTGAACTGGGCGAGTGTACGTGCT
AAAGTTCCATTATACCGCTCCACCAGTCCGTTTGTCGCTGGGTGATATGC
TGTGGTATGAACCCTCTTAATTCGCAAAGCAGTGCTGAGTTCGGCAACGA
GCCTCGCCAGGAAATTCTTTCCGCN
Run BLAST on NCBI

transcript from alignment at sc0000026:661109..661383

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003400 ID=TCONS_00003400|Name=TCONS_00003400|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at sc0000026:661109..661383 (Clytia hemisphaerica)
NGCGGAAAGAATTTCCTGGCGAGGCTCGTTGCCGAACTCAGCACTGCTTT
GCGAATTAAGAGGGTTCATACCACAGCATATCACCCAGCGACAAACGGAC
TGGTGGAGCGGTATAATGGAACTTTAGCACGTACACTCGCCCAGTTCACT
GACGCATTTCAGGACGACTAGGATACCCACATTAACTCTGCCCTATTTGC
TTATAGAGTTACCCCCCATTCCACTACCAGAGAAACTCCCTTTTTCTTAC
TCCACGGCCGCGACCCCAGAATGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001895XLOC_001895Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003400-exon-sc0000026-1491911889:661109..661383TCONS_00003400-exon-sc0000026-1491911889:661109..661383Clytia hemisphaericaexon
TCONS_00003400-exon-sc0000026-1510915933:661109..661383TCONS_00003400-exon-sc0000026-1510915933:661109..661383Clytia hemisphaericaexon
TCONS_00003400-exon-sc0000026-1575043694:661109..661383TCONS_00003400-exon-sc0000026-1575043694:661109..661383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:661109..661383 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.85124	1.68982	13.5913	17.8136	0	0.782217	5.53655	6.75036	8.3308	4.23802	0.73664	3.58082	5.98781	1.13004	1.68565	0.587972	0.511054	0.747823	0.606051	0.204258	2.83753	13.1686	1.99681	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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