TCONS_00003398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003398
Unique NameTCONS_00003398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003398 ID=TCONS_00003398|Name=TCONS_00003398|organism=Clytia hemisphaerica|type=transcript|length=772bp
ttttttttttattacgaGGAAGCGGTTGCTTTTGTGAATCACTTTTGGCC
CTAATCTCAACAACGTAAACCTACTATAATCGCTATCAACAACACACTAT
AAGTGGTACCTTGACGTCCTGGTTGTTCTTTTCCGTGTAGTCCCTGTGTC
CGATTGACAGGCTGGTATCGATTCCACCAATCAGATTTCGtcaacaccaa
aaaaaacaacaactaaTAACtccaggtaaaaaaaattttcaaaaaaattt
caacgaaATAACCaataaaaaacaacgaaaatttCAAGGTCGATTCAGGT
CATTCTACTCCACTAATTTCAAATACTCTTATTCAGCATTCACTTTAATT
TTTGTTCACTCACAGTCAATCATTCGCTTGTTGCACAAAAAACTTCATGG
TTGGCCCAACAAACTCAGTAACTTTGCCTGTgtataaacaaaaattaaag
gGATCGCTGTGAAACAATCTCAACACTCTTCTGTTATTCTGTTTGGTCAT
GAGCTAATCTTGTTCAACTTTCATCAATTCTATTTTTAGCTTGTTTATCA
TACCAAACAGTGTTTCTATTTTCATGTACAGAACTGCGCATATTCTGTAC
AACTAATTTTCTCTGCAAATTTGCAATTCGATTTTCTCCGAAATTTCTCG
AAAACCTAAATACGTATATCTACTAAACCTCCATCATGATTCCTATATAT
CTCATTAAATTTCTATTATCCACCAACGTGACTGTTCCACGCTCGGGCGC
TAAGCTATGGTCACACGTGGTC
Run BLAST on NCBI

transcript from alignment at sc0000026:656074..656845

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003398 ID=TCONS_00003398|Name=TCONS_00003398|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at sc0000026:656074..656845 (Clytia hemisphaerica)
GACCACGTGTGACCATAGCTTAGCGCCCGAGCGTGGAACAGTCACGTTGG
TGGATAATAGAAATTTAATGAGATATATAGGAATCATGATGGAGGTTTAG
TAGATATACGTATTTAGGTTTTCGAGAAATTTCGGAGAAAATCGAATTGC
AAATTTGCAGAGAAAATTAGTTGTACAGAATATGCGCAGTTCTGTACATG
AAAATAGAAACACTGTTTGGTATGATAAACAAGCTAAAAATAGAATTGAT
GAAAGTTGAACAAGATTAGCTCATGACCAAACAGAATAACAGAAGAGTGT
TGAGATTGTTTCACAGCGATCcctttaatttttgtttatacACAGGCAAA
GTTACTGAGTTTGTTGGGCCAACCATGAAGTTTTTTGTGCAACAAGCGAA
TGATTGACTGTGAGTGAACAAAAATTAAAGTGAATGCTGAATAAGAGTAT
TTGAAATTAGTGGAGTAGAATGACCTGAATCGACCTTGaaattttcgttg
ttttttattGGTTATttcgttgaaatttttttgaaaattttttttacctg
gaGTTAttagttgttgttttttttggtgttgaCGAAATCTGATTGGTGGA
ATCGATACCAGCCTGTCAATCGGACACAGGGACTACACGGAAAAGAACAA
CCAGGACGTCAAGGTACCACTTATAGTGTGTTGTTGATAGCGATTATAGT
AGGTTTACGTTGTTGAGATTAGGGCCAAAAGTGATTCACAAAAGCAACCG
CTTCCtcgtaataaaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001893XLOC_001893Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003398-exon-sc0000026-1491911889:656074..656845TCONS_00003398-exon-sc0000026-1491911889:656074..656845Clytia hemisphaericaexon
TCONS_00003398-exon-sc0000026-1510915933:656074..656845TCONS_00003398-exon-sc0000026-1510915933:656074..656845Clytia hemisphaericaexon
TCONS_00003398-exon-sc0000026-1575043694:656074..656845TCONS_00003398-exon-sc0000026-1575043694:656074..656845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:656074..656845 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.116197	0.020183	0.054188	0.231362	2.1245	1.41984	7.86286	9.44425	0.243103	0.456919	3.4577	0.751293	1.93775	1.4829	0.302373	0.992728	1.13787	0.578583	0	0	0.065517	0.309182	0.144505	0.0743003	5.10829	4.16892	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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