TCONS_00003393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003393
Unique NameTCONS_00003393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003393 ID=TCONS_00003393|Name=TCONS_00003393|organism=Clytia hemisphaerica|type=transcript|length=751bp
aacaaaatggcTGACACATATGAACTCACACCAAAAACAGTGCTTCAAAA
TTTAAACAGAGAACCAGATGGTAGAGTTATTACATACATTTATGAAGACG
AGGATGGCGATTTAGATGAGAATAACCCATCACAACCCCTCCTCCAACAA
AATACAAGAAAACGAAAATGTAAACTTGTACAACGGTTTAAGAAGATTTT
CGTCAAGTGTCAGCCATCCAATGACATTTCATTACAAGAACAAAACAACA
ACCAACAAGCAATTGATCAGTTTGAGAATGCGAGTATTCAAGAACATTAT
AGACCAATGGAACAAACAACCTTCGATCCTGGAGATAATGTTGAAACAGC
TTTTCCTTCAGATCTGACAAATTTGGCATTGTATCGACCCCGAACATCAG
TCTTACATTCACAAAGAGGCTCTTCAGCGACAGAATATGAAAATGAAGAC
ATACAGCAGCATAATAAGGACAATAATGAGAATAGAGATGAACATTAAAT
GACAAAATCTCATGAAAAGCAATAAATATGGGTTTTTTATGGAGAGAACT
ATGACATTATATCAGATAGAATGTTACATACTATTTATAAGGTGAAATGA
ATTAGACAACTCAATGAAGCAAGATATGGACACACAAAACCATGGACAAT
AAACCAGTGCATCAATGAAATAGAATTTACTATCTCTTGAGACTGAGAGA
TCGATGTTGTTGTTTTGATGAAGAACGAAGCaaacagaaaaagaaagcaa
a
Run BLAST on NCBI

protein sequence of TCONS_00003393-protein

>TCONS_00003393-protein ID=TCONS_00003393-protein|Name=TCONS_00003393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
NKMADTYELTPKTVLQNLNREPDGRVITYIYEDEDGDLDENNPSQPLLQQ
NTRKRKCKLVQRFKKIFVKCQPSNDISLQEQNNNQQAIDQFENASIQEHY
RPMEQTTFDPGDNVETAFPSDLTNLALYRPRTSVLHSQRGSSATEYENED
IQQHNKDNNENRDEH
Run BLAST on NCBI

transcript from alignment at sc0000026:563448..564198

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003393 ID=TCONS_00003393|Name=TCONS_00003393|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000026:563448..564198 (Clytia hemisphaerica)
tttgctttctttttctgtttGCTTCGTTCTTCATCAAAACAACAACATCG
ATCTCTCAGTCTCAAGAGATAGTAAATTCTATTTCATTGATGCACTGGTT
TATTGTCCATGGTTTTGTGTGTCCATATCTTGCTTCATTGAGTTGTCTAA
TTCATTTCACCTTATAAATAGTATGTAACATTCTATCTGATATAATGTCA
TAGTTCTCTCCATAAAAAACCCATATTTATTGCTTTTCATGAGATTTTGT
CATTTAATGTTCATCTCTATTCTCATTATTGTCCTTATTATGCTGCTGTA
TGTCTTCATTTTCATATTCTGTCGCTGAAGAGCCTCTTTGTGAATGTAAG
ACTGATGTTCGGGGTCGATACAATGCCAAATTTGTCAGATCTGAAGGAAA
AGCTGTTTCAACATTATCTCCAGGATCGAAGGTTGTTTGTTCCATTGGTC
TATAATGTTCTTGAATACTCGCATTCTCAAACTGATCAATTGCTTGTTGG
TTGTTGTTTTGTTCTTGTAATGAAATGTCATTGGATGGCTGACACTTGAC
GAAAATCTTCTTAAACCGTTGTACAAGTTTACATTTTCGTTTTCTTGTAT
TTTGTTGGAGGAGGGGTTGTGATGGGTTATTCTCATCTAAATCGCCATCC
TCGTCTTCATAAATGTATGTAATAACTCTACCATCTGGTTCTCTGTTTAA
ATTTTGAAGCACTGTTTTTGGTGTGAGTTCATATGTGTCAgccattttgt
t

Coding sequence (CDS) from alignment at sc0000026:563448..564198

>TCONS_00003393 ID=TCONS_00003393|Name=TCONS_00003393|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000026:563448..564198 (Clytia hemisphaerica)
TTAATGTTCATCTCTATTCTCATTATTGTCCTTATTATGCTGCTGTATGT
CTTCATTTTCATATTCTGTCGCTGAAGAGCCTCTTTGTGAATGTAAGACT
GATGTTCGGGGTCGATACAATGCCAAATTTGTCAGATCTGAAGGAAAAGC
TGTTTCAACATTATCTCCAGGATCGAAGGTTGTTTGTTCCATTGGTCTAT
AATGTTCTTGAATACTCGCATTCTCAAACTGATCAATTGCTTGTTGGTTG
TTGTTTTGTTCTTGTAATGAAATGTCATTGGATGGCTGACACTTGACGAA
AATCTTCTTAAACCGTTGTACAAGTTTACATTTTCGTTTTCTTGTATTTT
GTTGGAGGAGGGGTTGTGATGGGTTATTCTCATCTAAATCGCCATCCTCG
TCTTCATAAATGTATGTAATAACTCTACCATCTGGTTCTCTGTTTAAATT
TTGAAGCACTGTTTTTGGTGTGAGTTCATATGTGTCAgccattttgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001888XLOC_001888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003393-exon-sc0000026-1491911889:563448..564198TCONS_00003393-exon-sc0000026-1491911889:563448..564198Clytia hemisphaericaexon
TCONS_00003393-exon-sc0000026-1510915933:563448..564198TCONS_00003393-exon-sc0000026-1510915933:563448..564198Clytia hemisphaericaexon
TCONS_00003393-exon-sc0000026-1575043694:563448..564198TCONS_00003393-exon-sc0000026-1575043694:563448..564198Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003393-proteinTCONS_00003393-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:563448..564198 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.392743	0.127662	0.370569	0.217527	15.0063	11.0909	21.4596	25.1325	16.9891	25.5531	24.0067	24.2383	25.2059	18.8525	25.5349	19.1461	14.8398	21.9089	33.3299	35.5327	12.2145	16.9473	6.75466	6.34567	9.27675	12.2307	207.333	298.573	89.7982	62.0297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top