TCONS_00003390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003390
Unique NameTCONS_00003390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003390 ID=TCONS_00003390|Name=TCONS_00003390|organism=Clytia hemisphaerica|type=transcript|length=418bp
caaaaattacaatatATCAAACTCTCTTCTTGTCATAGAATGCTCTAGAA
ACAAATACAAAAAACGTGGTATAATAATAAACTGACAGTAGATTTCGTTT
gcttccttcaattttttttaaaaacaaaaagtttgaccAAAAATAAGAAC
TATGGCAGGGAAAATTAACTTTAAATTGACCTAATAGTACAAACATACGA
TATAGAGGTACGATGTCTTCAAAAAATGACGCCATCTTAGGTCGAGGTGA
AGCACGTAGTCTCAAGTGGAAAATTACTCCTTGTTTAAGTTCTTTactga
aaagtcaatttttcaaaaagttgatatttggGCCACATTAAAGGTAGGGT
TAAAAAAAGAGTCTTCTCTCTAAGGATGTATGAAATTCAGTACTCTTGTA
TGCTTAATGTAGGGGGNN
Run BLAST on NCBI

transcript from alignment at sc0000026:531263..531680

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003390 ID=TCONS_00003390|Name=TCONS_00003390|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0000026:531263..531680 (Clytia hemisphaerica)
NNCCCCCTACATTAAGCATACAAGAGTACTGAATTTCATACATCCTTAGA
GAGAAGACTCTTTTTTTAACCCTACCTTTAATGTGGCccaaatatcaact
ttttgaaaaattgacttttcagtAAAGAACTTAAACAAGGAGTAATTTTC
CACTTGAGACTACGTGCTTCACCTCGACCTAAGATGGCGTCATTTTTTGA
AGACATCGTACCTCTATATCGTATGTTTGTACTATTAGGTCAATTTAAAG
TTAATTTTCCCTGCCATAGTTCTTATTTTTggtcaaactttttgttttta
aaaaaaattgaaggaagcAAACGAAATCTACTGTCAGTTTATTATTATAC
CACGTTTTTTGTATTTGTTTCTAGAGCATTCTATGACAAGAAGAGAGTTT
GATatattgtaatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001885XLOC_001885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003390-exon-sc0000026-1491911889:531263..531680TCONS_00003390-exon-sc0000026-1491911889:531263..531680Clytia hemisphaericaexon
TCONS_00003390-exon-sc0000026-1510915933:531263..531680TCONS_00003390-exon-sc0000026-1510915933:531263..531680Clytia hemisphaericaexon
TCONS_00003390-exon-sc0000026-1575043694:531263..531680TCONS_00003390-exon-sc0000026-1575043694:531263..531680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:531263..531680 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3765	2.31746	3.26739	2.44448	24.2652	16.8231	19.8599	23.2918	5.7218	7.44174	9.28689	5.53957	7.56399	10.2001	3.66281	4.5514	4.5875	5.22449	4.5112	5.47595	7.05733	8.88598	5.25506	5.48541	15.4915	23.2599	5.81902	6.70704	5.46387	3.83918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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