TCONS_00003380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003380
Unique NameTCONS_00003380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003380 ID=TCONS_00003380|Name=TCONS_00003380|organism=Clytia hemisphaerica|type=transcript|length=859bp
TCTATCTACAATTCAAAATATTATTAAGAAATCAGTGTCTACGTTACAAT
GTGCTACTAAATAAAATAGTAACTTTATAAGGATTAATCGAATtaatttt
gaagataaaactcCGGGAAACTTTCGTGAGGATTTACTTTCACAAATTAT
ATGAAAAAGCACCCTTAGAGCAAAACAAGTGGTGTTTGCGCAAAAGATAG
CAGCCAAAAAGCCGCGTTGTAATCTTGATAATAGGATTACCGAAAGAAAA
CTGTAAAAAGGGGCAATTCTTTTTTATCTATaaccaaaaaataattattg
aatcaaattttatccatcaatgataaaatgtttttttgttttttgttgtt
aacTGTTTTCTAGTCCTCTTTCCAAACACTTCTTCGACGAACAAATCAAA
ACACATTTTCAAACATAATCTCTGACATGCTTTTATAGTTTGGTTACCAA
ATTTCGCATTCGAAAAAAAAGACCAATCAACATCGTCACATCATCACttc
gctaccttaattcaaaaggggcctaagtcctgtgagccttaattcaaaag
gggcctaagtccatttgggtcattttgagaaaattgcaattaaagttttt
ccttgattctgaaaccatttttgatggtaaagctttgaagcaaatgtttt
ctgaaagccaTAGCTATAAGTTGTTTTTCCAATGAAAAGGCATTCGTTTG
AAAGGAATGTATTTTTGTATCATTATTTTTGACAATCTCAGTAAATATGa
ttgataaagaaaataaataaagaaaaactcaattaaactttttaggatgc
atggacttaggcccattTGCAATTCAATTGGACTTAGGCCTCTTCAAAAC
TTAACAAAC
Run BLAST on NCBI

transcript from alignment at sc0000026:302335..303193

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003380 ID=TCONS_00003380|Name=TCONS_00003380|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at sc0000026:302335..303193 (Clytia hemisphaerica)
GTTTGTTAAGTTTTGAAGAGGCCTAAGTCCAATTGAATTGCAaatgggcc
taagtccatgcatcctaaaaagtttaattgagtttttctttatttatttt
ctttatcaatCATATTTACTGAGATTGTCAAAAATAATGATACAAAAATA
CATTCCTTTCAAACGAATGCCTTTTCATTGGAAAAACAACTTATAGCTAt
ggctttcagaaaacatttgcttcaaagctttaccatcaaaaatggtttca
gaatcaaggaaaaactttaattgcaattttctcaaaatgacccaaatgga
cttaggccccttttgaattaaggctcacaggacttaggccccttttgaat
taaggtagcgaaGTGATGATGTGACGATGTTGATTGGTCTTTTTTTTCGA
ATGCGAAATTTGGTAACCAAACTATAAAAGCATGTCAGAGATTATGTTTG
AAAATGTGTTTTGATTTGTTCGTCGAAGAAGTGTTTGGAAAGAGGACTAG
AAAACAgttaacaacaaaaaacaaaaaaacattttatcattgatggataa
aatttgattcaataattattttttggttATAGATAAAAAAGAATTGCCCC
TTTTTACAGTTTTCTTTCGGTAATCCTATTATCAAGATTACAACGCGGCT
TTTTGGCTGCTATCTTTTGCGCAAACACCACTTGTTTTGCTCTAAGGGTG
CTTTTTCATATAATTTGTGAAAGTAAATCCTCACGAAAGTTTCCCGgagt
tttatcttcaaaattaATTCGATTAATCCTTATAAAGTTACTATTTTATT
TAGTAGCACATTGTAACGTAGACACTGATTTCTTAATAATATTTTGAATT
GTAGATAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001875XLOC_001875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003380-exon-sc0000026-1491911889:302335..303193TCONS_00003380-exon-sc0000026-1491911889:302335..303193Clytia hemisphaericaexon
TCONS_00003380-exon-sc0000026-1510915933:302335..303193TCONS_00003380-exon-sc0000026-1510915933:302335..303193Clytia hemisphaericaexon
TCONS_00003380-exon-sc0000026-1575043694:302335..303193TCONS_00003380-exon-sc0000026-1575043694:302335..303193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:302335..303193 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.29463	3.48445	3.80137	2.54787	3.16631	2.3956	3.52099	4.44194	3.59423	3.31682	2.6839	3.52846	2.65714	2.87355	2.02091	1.75826	1.94899	1.3538	2.18952	2.14494	4.05618	3.89734	2.11378	2.46782	2.69056	4.94662	2.51821	2.18204	2.47327	3.19336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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