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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003378 ID=TCONS_00003378|Name=TCONS_00003378|organism=Clytia hemisphaerica|type=transcript|length=1874bp
TTAGCTTCCAAAAAGAAGCTCCTAATACGATGACTATGATGAATGACAGC
TTGGAAAACCACTTAATCAAATTGTAGACCTCCTTGATATTTGGAATATC
TTATCACAACGAAGATAAGTGGTCAGATATCTAATTAAAAGGCGTATTTA
GAAACCACCACAAATTTTAATTCGTTCAGCTCAAAACCactaatcttttt
aaaatttgacaatAATTTCGAAATTCCCCTGCTGTGTTGTTTATATCACC
TTTCAAATGCTGCATTCTAATCTTTTAAAGGCACTTTCGGATATACTGAT
CTGGTTTTCCGAATGAcaaaaaaagcctcaaaaacaCAAATATTGAAGAT
TGACAGACAGTTCAAATGTAATTTCTTTTGATCACATTAAGGTTACCGTA
GGTTTCGAAATCTCACAATATTAAGACTGGCTTAGAATAAAATCCAATAT
AAAATatacttatttttaaaaaaatgtagcaGATTTATCATATTGATAAT
TAGATTGAGATAACATATTGTCTACAAAATAGACAGTTCCAGGCTTTTTA
TCTTTTATATcttcgaaacgaaggaagatatgacctAGAATAATAAGGTT
TACACTTAAAGCCACACCCCAACTCTATCTAAGTTCTCTGAGGTGCATAG
TCCCTTACAATCCTATTATCTGAACAAAATACCTGGAAAGGGAATAGTCT
AGGAAGCACGATAAGTTTGAAGACAGGAGTTGCCACCTTGTTTGTTGGGA
ACTCTAATAGCAACGCTTTTTTTCTGGTACCCCTGCGCATATATTTTCCC
GCATTtattctacacgttttttataagaacaaactgtataagaacataag
gcttcgatggccaaaatattaagaacaagttacgaacattttaaggcttt
gtggactctaaaacacccaattttcaaaagaaattccaaaatggaaaaaa
atatgaacatgttaagaaaactTTATGCTTAAAACTCAGAAAAGctccaa
aaattttggatgttcttattaaaaaaacgtatattgtAAAATAAACTGTG
CAAAATAAAGCTTGTAAACatcaatttaatttttgatgGTATTTGTAAAG
CATGTCTTATAAAATGATGCTAATTACAGAAGCGGAAGCTatatgataaa
aaatacacaagGGAATTAATGTCAATCAAACGACACAGATTACTCATTAT
GACGTCATGGATTACCTAAAGCTGCACAATATCATTAAATGCACGCCCTT
TAGTAACAGAGTTAAAGCAATGTGAGAAAAATTCACATCAATCAATGACA
AGCTAACAATATCGAAATATGTCCATACGTCCATGTGAAAGTATCACGGA
ATCAGAAACGGACAAAACAAGTCTTCCGGTGAAATCGGATGGCGTTATAC
ATAGAACGGAGAAAAAGGTCCACTGGTGGCAATATGAAAGTAGAAACGCC
TCAAAATGAATCATCACCCTTTCACAATAACACCAGGAGTGATCAAAATA
AGGGACATTCCTTCTAATATATAAATTTCGTAGACTGAAGGAAATGGTAA
AACACATGTCCGTTTGTTAGGCACCTGAGAACACTGATCTGTACTTGAAT
TagcttttaatgtttttatactAATATTCTGGTAGCAGTTGGGAGTCGCC
CACGCTGAGGCTCTAAAGGAGCGAACAATCCCGATAGAGGGGTGTTAAGA
GTAGGGCGAGATTCCTTGGTCCGAACTTTGCAATAGCTGATGTGGAAAAT
CCCGACTTTAAAGATTTAGCACGTAGAAAATATTAATACTCCGGAGTATT
TACAAAGGTGTTTTTACTCAAGGCAAAATAAGGGACATTCCTTATGATAT
TAATATCCGTAAATTTGGGTCAGG Run BLAST on NCBI transcript from alignment at sc0000026:281917..283790 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003378 ID=TCONS_00003378|Name=TCONS_00003378|organism=Clytia hemisphaerica|type=transcript|length=1874bp|location=Sequence derived from alignment at sc0000026:281917..283790 (Clytia hemisphaerica)
CCTGACCCAAATTTACGGATATTAATATCATAAGGAATGTCCCTTATTTT
GCCTTGAGTAAAAACACCTTTGTAAATACTCCGGAGTATTAATATTTTCT
ACGTGCTAAATCTTTAAAGTCGGGATTTTCCACATCAGCTATTGCAAAGT
TCGGACCAAGGAATCTCGCCCTACTCTTAACACCCCTCTATCGGGATTGT
TCGCTCCTTTAGAGCCTCAGCGTGGGCGACTCCCAACTGCTACCAGAATA
TTagtataaaaacattaaaagctAATTCAAGTACAGATCAGTGTTCTCAG
GTGCCTAACAAACGGACATGTGTTTTACCATTTCCTTCAGTCTACGAAAT
TTATATATTAGAAGGAATGTCCCTTATTTTGATCACTCCTGGTGTTATTG
TGAAAGGGTGATGATTCATTTTGAGGCGTTTCTACTTTCATATTGCCACC
AGTGGACCTTTTTCTCCGTTCTATGTATAACGCCATCCGATTTCACCGGA
AGACTTGTTTTGTCCGTTTCTGATTCCGTGATACTTTCACATGGACGTAT
GGACATATTTCGATATTGTTAGCTTGTCATTGATTGATGTGAATTTTTCT
CACATTGCTTTAACTCTGTTACTAAAGGGCGTGCATTTAATGATATTGTG
CAGCTTTAGGTAATCCATGACGTCATAATGAGTAATCTGTGTCGTTTGAT
TGACATTAATTCCcttgtgtattttttatcatatAGCTTCCGCTTCTGTA
ATTAGCATCATTTTATAAGACATGCTTTACAAATACcatcaaaaattaaa
ttgatGTTTACAAGCTTTATTTTGCACAGTTTATTTTacaatatacgttt
ttttaataagaacatccaaaatttttggagCTTTTCTGAGTTTTAAGCAT
AAagttttcttaacatgttcatatttttttccattttggaatttcttttg
aaaattgggtgttttagagtccacaaagccttaaaatgttcgtaacttgt
tcttaatattttggccatcgaagccttatgttcttatacagtttgttctt
ataaaaaacgtgtagaataAATGCGGGAAAATATATGCGCAGGGGTACCA
GAAAAAAAGCGTTGCTATTAGAGTTCCCAACAAACAAGGTGGCAACTCCT
GTCTTCAAACTTATCGTGCTTCCTAGACTATTCCCTTTCCAGGTATTTTG
TTCAGATAATAGGATTGTAAGGGACTATGCACCTCAGAGAACTTAGATAG
AGTTGGGGTGTGGCTTTAAGTGTAAACCTTATTATTCTaggtcatatctt
ccttcgtttcgaagATATAAAAGATAAAAAGCCTGGAACTGTCTATTTTG
TAGACAATATGTTATCTCAATCTAATTATCAATATGATAAATCtgctaca
tttttttaaaaataagtatATTTTATATTGGATTTTATTCTAAGCCAGTC
TTAATATTGTGAGATTTCGAAACCTACGGTAACCTTAATGTGATCAAAAG
AAATTACATTTGAACTGTCTGTCAATCTTCAATATTTGtgtttttgaggc
tttttttgTCATTCGGAAAACCAGATCAGTATATCCGAAAGTGCCTTTAA
AAGATTAGAATGCAGCATTTGAAAGGTGATATAAACAACACAGCAGGGGA
ATTTCGAAATTattgtcaaattttaaaaagattagtGGTTTTGAGCTGAA
CGAATTAAAATTTGTGGTGGTTTCTAAATACGCCTTTTAATTAGATATCT
GACCACTTATCTTCGTTGTGATAAGATATTCCAAATATCAAGGAGGTCTA
CAATTTGATTAAGTGGTTTTCCAAGCTGTCATTCATCATAGTCATCGTAT
TAGGAGCTTCTTTTTGGAAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003378-exon-sc0000026-1491911889:281917..283790 | TCONS_00003378-exon-sc0000026-1491911889:281917..283790 | Clytia hemisphaerica | exon |
| TCONS_00003378-exon-sc0000026-1510915933:281917..283790 | TCONS_00003378-exon-sc0000026-1510915933:281917..283790 | Clytia hemisphaerica | exon |
| TCONS_00003378-exon-sc0000026-1575043694:281917..283790 | TCONS_00003378-exon-sc0000026-1575043694:281917..283790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:281917..283790 . |
Blast
The following BLAST results are available for this feature:
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