TCONS_00003374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003374
Unique NameTCONS_00003374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003374 ID=TCONS_00003374|Name=TCONS_00003374|organism=Clytia hemisphaerica|type=transcript|length=267bp
TACGAAAACGTTTCGTAAAAAAGACTGACTGGCCACCTTCGTCACCTGAC
TGCAATCCACTGGATTATTATTTCTGGGATGCAGTCAAGGTGGAGGTGTA
CAGGGGCCGTTTAAACAACCCGTTCGAAAACGaagaacaattaaaaagaa
agatcaaatcAGTATGGAAAAAAATCGGTTCCAATCATGAAATCATCCGA
AAAGCTTTGAAACAATTCCTACCGCGAGTTCGTACTGTGAATGAAAATAA
TGGTGGATGTATCAAAT
Run BLAST on NCBI

transcript from alignment at sc0000026:158227..158493

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003374 ID=TCONS_00003374|Name=TCONS_00003374|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at sc0000026:158227..158493 (Clytia hemisphaerica)
ATTTGATACATCCACCATTATTTTCATTCACAGTACGAACTCGCGGTAGG
AATTGTTTCAAAGCTTTTCGGATGATTTCATGATTGGAACCGATTTTTTT
CCATACTgatttgatctttctttttaattgttcttCGTTTTCGAACGGGT
TGTTTAAACGGCCCCTGTACACCTCCACCTTGACTGCATCCCAGAAATAA
TAATCCAGTGGATTGCAGTCAGGTGACGAAGGTGGCCAGTCAGTCTTTTT
TACGAAACGTTTTCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001869XLOC_001869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003374-exon-sc0000026-1491911889:158227..158493TCONS_00003374-exon-sc0000026-1491911889:158227..158493Clytia hemisphaericaexon
TCONS_00003374-exon-sc0000026-1510915933:158227..158493TCONS_00003374-exon-sc0000026-1510915933:158227..158493Clytia hemisphaericaexon
TCONS_00003374-exon-sc0000026-1575043694:158227..158493TCONS_00003374-exon-sc0000026-1575043694:158227..158493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:158227..158493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.571817	1.5135	0.208316	0	0.797917	0	0	0	0	0.617596	0	1.41754	1.86209	0	1.19235	0.203284	0.828434	0.141565	0.153345	0	0.572072	0	1.77956	0.616774	8.03865	4.44115	0	0	2.54607	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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