|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003361 ID=TCONS_00003361|Name=TCONS_00003361|organism=Clytia hemisphaerica|type=transcript|length=1645bp
acatcaaaatgtaAACATAAATCTCGCGTCTTTTGGTTGTGGAACGGTCG
GTTCAAAGAATTTGGTTGGAAAGGAGAAGAGTAATCGTaattaagaaatt
taaaaatactgaaaaattcGTATAGACATGTCATGAttaaacttttgata
aaaaacaacTAAAACCATAGATTTTTCTTTATGAATTTGCATATGAtatt
ataaaacaaaaactaacaTAAAAACAGGCTTTGTGTATAGACGCGAGAAA
CCGTTTTTTAAGGAATGGGGGATTTGAGATACAGTCTTTTGCAAAAACAT
ATCATGGATCACATCTTAGAGGAGTATGATATCATCCCAAACAGAGatGA
TATCCACATACTAAATGAACAACATCATCATCATGTACACATATCACGAA
AACACCACCACAGCAGTGAAACAGATATATTGGCATACAATGACGcaata
aagaaaatcatttcGAGTCCGAATTTCAACAGCCGACATTTTGCAGACCA
TGAATTAATGCTTTGCGAATCGTACTGTTTACTATGGCAAAATAGTAATG
GAAAACTTCAAAGTCCAATCGAAAAAAACGAAGAATTAAATCAAGGAGTT
TCTACTGCTATGCTGCTCGACTTGTACACATCCAAAATCATTGATTTTAT
GAGCTGTGGGAATTCATTGGTTATTGACATTGTTAACCCTGACCTTGCTT
TAAACCCTATTCAAGCCTTCATATTAAACATTTTGTTACGGCGCCGACCA
CGACGCAAAACAATACAAGACGTCTTGGCAATCTCCAAAACGTGTGGCTG
tgctaaaatagttttaaagaaCCTACGTCTTAGAGGTATCATTGGTGTCT
CGGAGAGCGGACGCCTATTTGCTGCAAGCGCACGACGACAAAGTACTATC
CGTTTTGGTCCCATACGGAAAATCGAGCAACAGCTCAAGTGGGTCGCTTT
GAAAGAGAAGTGTCCTGATTCGTATATGCTTTCACTTATAACTTTATGTT
TTATCGGACAGGAGAGGCATACTATTTTGGATCCGATCTTAGAAAGACAG
TTAACAAAACGAGAATATAAAGctgcaaaagaaaatttaaaaataacagT
CAAGACTCAAGCAACAATTCTCAAGAGTGcgaaatttgtgaaaaagaaat
ttagcaGAGATGCGCATACTGAGAGGTTGTGTATGCGAAAAGAATCGTTC
AATGGACATTTTGATGAACGAATAGGATGAAAATAACGTCTAgccaacat
ccatataacgttcaTAACGACTTTATAATGTAATGTTAGATGGGCGATAG
GTTGAGTCAAGAAAAGCCACTTTTGATAACTGGAGACTCAATGAAGTTAA
AACCCTAAGACTTGAATGTGATTCCTTAAAAATCTATTACGGATGAGGGT
TGTTTTTCCTAATTGAGTTTCGCAGCCTCTACAGTTTTTTTCACAAAGTC
gagattgaaagtaaaagagGGATTCACCTTTTCTCACCTAGAAAAGGTTA
TATATTTCATTACAAGTCCTAGCCAACGTATTCTGGATTTAATATATACG
TTTTATCTTTGGTATCCATCGAAAAGCcacaaaaatgttgaatacaCGGT
CTGTTGAAACaattattataaaaaagtaGAACATTTTCTAActgt Run BLAST on NCBI protein sequence of TCONS_00003361-protein >TCONS_00003361-protein ID=TCONS_00003361-protein|Name=TCONS_00003361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MGDLRYSLLQKHIMDHILEEYDIIPNRDDIHILNEQHHHHVHISRKHHHS
SETDILAYNDAIKKIISSPNFNSRHFADHELMLCESYCLLWQNSNGKLQS
PIEKNEELNQGVSTAMLLDLYTSKIIDFMSCGNSLVIDIVNPDLALNPIQ
AFILNILLRRRPRRKTIQDVLAISKTCGCAKIVLKNLRLRGIIGVSESGR
LFAASARRQSTIRFGPIRKIEQQLKWVALKEKCPDSYMLSLITLCFIGQE
RHTILDPILERQLTKREYKAAKENLKITVKTQATILKSAKFVKKKFSRDA
HTERLCMRKESFNGHFDERIG Run BLAST on NCBI transcript from alignment at sc0000026:899700..902973- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003361 ID=TCONS_00003361|Name=TCONS_00003361|organism=Clytia hemisphaerica|type=transcript|length=3274bp|location=Sequence derived from alignment at sc0000026:899700..902973- (Clytia hemisphaerica)
ACATCAAAATGTAAACATAAATCTCGCGTCTTTTGGTTGTGGAACGGTCG
GTTCAAAGAATTTGGTTGGAAAGGAGAAGAGTAATCGTAATTAAGAAATT
TAAAAATACTGAAAAATTCGTATAGACATGTCATGATTAAACTTTTGATA
AAAAACAACTAAAACCATAGATTTTTCTTTATGAATTTGCATATGATATT
ATAAAACAAAAACTAACATAAAAACAGGCTTTGTGTATAGACGCGAGAAA
CCGTTTTTTAAGGAATGGGGGATTTGAGATACAGTCTTTTGCAAAAACAT
ATCATGGATCACATCTTAGAGGAGTATGATATCATCCCAAACAGAGGTAA
GCATCCCTTTAAACCCAAAGTCAGGTTGTTTTTTGCCACCGCAGGAAGCC
TAAAGCTTCCGAGGATGGCATTCATAGCTTCACGCATAAGGAAGTTGGGC
AAACATCTCATAATTTTGTGCGCGTTTTTCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGACACAACTTGCTAATATTTGTAGACTAAATTTTGCTTCAG
ATGAGATGCCATTCTAACAGAAGTAAAGGCTATCAGTAACATTTCTTTCA
AAATTCAACAGCTTATTTGATCGTTCTTCTGCGGTGGCACTTTAATGAAA
ATTATGGCTAGTCTATTTTGTATTCCCACCTACTGGGAAAATTAAGTATT
GGAAATTAAAGTAAAGCCCATTTGAGACTGACCATAATATAGACTGTAGT
AGATTCTATTGTGTAGAAAAAGTATAATAAAGAGAGAGAGAACTCAAGCC
TCCACTCCTTACCGACAAAAGGTTGTGAAACAATCTAGTACCCAGGTTCA
CCGGTATCACTTTGTACTCATGGACGCGTATAAATAAAAAAAGGTGAAAT
AAGGGACTGGACACGAATTTGAAATATTTTCTTTCAGATGATATCCACAT
ACTAAATGAACAACATCATCATCATGTACACATATCACGAAAACACCACC
ACAGCAGTGAAACAGATATATTGGCATACAATGACGCAATAAAGAAAATC
ATTTCGAGTCCGAATTTCAACAGCCGACATTTTGCAGACCATGAATTAAT
GCTTTGCGAATCGTACTGTTTACTATGGCAAAATAGTAATGGAAAACTTC
AAAGTCCAATCGAAAAAAACGAAGAATTAAATCAAGGTATAAATCATTTT
TCACTATAATTCAACAGAGAATTTGCATAAAGTCGAGTATGACTTTAATT
CACAGCCTTAAATTCTTTTTCATTGATGTCTCGTGAAATGGGGATGATAA
AATAAACTAGTCTAAATATTTGTAGGAGTTTATGAAAAATCCCTGGCTTT
TAAAGAGTGGGGATTGTTTGTGCATTGTTTATCTGGCGATCATTAAAACA
TCGGTCCTCATAAATGAAGAATCATCGAAAACTGAAAAAAGAATTTGGTG
AATATTTGATTTTTAAGGCCAAATAAAAACAAGCAATTTTTAAACTTTTG
AAACCAATTGCTCTCTTTTTTTAGGAGTTTCTACTGCTATGCTGCTCGAC
TTGTACACATCCAAAATCATTGATTTTATGAGCTGTGGGAATTCATTGGT
TATTGACATTGTTAACCCTGACCTTGCTTTAAACCCTATTCAAGCCTTCA
TATTAAACATTTTGTTACGGCGCCGACCACGACGCAAAACAATACAAGAC
GTCTTGGCAATCTCCAAAACGTGTGGCTGTGCTAAAATAGTTTTAAAGAA
CCTACGTCTTAGAGGTATCATTGGTGTCTCGGAGAGCGGACGCCTATTTG
CTGCAAGCGCACGACGACAAAGTACTATCCGTTTTGGTCCCATACGGAAA
ATCGAGCAACAGCTCAAGTGGGTCGCTTTGAAAGAGAAGTGTCCTGATTC
GTATATGCTTTCACTTATAACTTTATGTTTTATCGGACAGGAGAGGCATA
CTATTTTGGATCCGATCTTAGAAAGACAGTTAACAAAACGAGAATATAAA
GCTGCAAAAGAAAATTTAAAAATAACAGTCAAGACTCAAGCAACAATTCT
CAAGAGTGCGAAATTTGTGAAAAAGAAATTTAGCAGAGATGCGCATACTG
AGAGGTTGTGTATGCGAAAAGAATCGTTCAATGGACATTTTGATGAACGA
ATAGGATGAAAATAACGTCTAGCCAACATCCATATAACGTTCATAACGAC
TTTATAATGTAATGTTAGATGGGCGATAGGTTGAGTCAAGAAAAGCCACT
TTTGATAACTGGAGACTCAATGAAGTTAAAACCCTAAGACTTGAATGTGA
TTCCTTAAAAATCTATTACGGATGAGGGTTGTTTTTCCTAATTGAGTTTC
GCAGCCTCTACAGTTTTTTTCACAAAGTCGAGATTGAAAGTAAAAGAGGG
ATTCACCTTTTCTCACCTAGAAAAGGTTATATATTTCATTACAAGTCCTA
GCCAACGTATTCTGGATTTAATATATACGTTTTATCTTTGGTATCCATCG
AAAAGCCACAAAAATGTTGAATACACGGTCTGTTGAAACAATTATTATAA
AAAAGTAGAACATTTTCTAACTGT Coding sequence (CDS) from alignment at sc0000026:899700..902973- >TCONS_00003361 ID=TCONS_00003361|Name=TCONS_00003361|organism=Clytia hemisphaerica|type=CDS|length=2898bp|location=Sequence derived from alignment at sc0000026:899700..902973- (Clytia hemisphaerica)
GAGTTTCTACTGCTATGCTGCTCGACTTGTACACATCCAAAATCATTGAT
TTTATGAGCTGTGGGAATTCATTGGTTATTGACATTGTTAACCCTGACCT
TGCTTTAAACCCTATTCAAGCCTTCATATTAAACATTTTGTTACGGCGCC
GACCACGACGCAAAACAATACAAGACGTCTTGGCAATCTCCAAAACGTGT
GGCTGTGCTAAAATAGTTTTAAAGAACCTACGTCTTAGAGGTATCATTGG
TGTCTCGGAGAGCGGACGCCTATTTGCTGCAAGCGCACGACGACAAAGTA
CTATCCGTTTTGGTCCCATACGGAAAATCGAGCAACAGCTCAAGTGGGTC
GCTTTGAAAGAGAAGTGTCCTGATTCGTATATGCTTTCACTTATAACTTT
ATGTTTTATCGGACAGGAGAGGCATACTATTTTGGATCCGATCTTAGAAA
GACAGTTAACAAAACGAGAATATAAAGCTGCAAAAGAAAATTTAAAAATA
ACAGTCAAGACTCAAGCAACAATTCTCAAGAGTGCGAAATTTGTGAAAAA
GAAATTTAGCAGAGATGCGCATACTGAGAGGTTGTGTATGCGAAAAGAAT
CGTTCAATGGACATTTTGATGAACGAATAGGATGAATGATATCCACATAC
TAAATGAACAACATCATCATCATGTACACATATCACGAAAACACCACCAC
AGCAGTGAAACAGATATATTGGCATACAATGACGCAATAAAGAAAATCAT
TTCGAGTCCGAATTTCAACAGCCGACATTTTGCAGACCATGAATTAATGC
TTTGCGAATCGTACTGTTTACTATGGCAAAATAGTAATGGAAAACTTCAA
AGTCCAATCGAAAAAAACGAAGAATTAAATCAAGATGGGGGATTTGAGAT
ACAGTCTTTTGCAAAAACATATCATGGATCACATCTTAGAGGAGTATGAT
ATCATCCCAAACAGAGGAGTTTCTACTGCTATGCTGCTCGACTTGTACAC
ATCCAAAATCATTGATTTTATGAGCTGTGGGAATTCATTGGTTATTGACA
TTGTTAACCCTGACCTTGCTTTAAACCCTATTCAAGCCTTCATATTAAAC
ATTTTGTTACGGCGCCGACCACGACGCAAAACAATACAAGACGTCTTGGC
AATCTCCAAAACGTGTGGCTGTGCTAAAATAGTTTTAAAGAACCTACGTC
TTAGAGGTATCATTGGTGTCTCGGAGAGCGGACGCCTATTTGCTGCAAGC
GCACGACGACAAAGTACTATCCGTTTTGGTCCCATACGGAAAATCGAGCA
ACAGCTCAAGTGGGTCGCTTTGAAAGAGAAGTGTCCTGATTCGTATATGC
TTTCACTTATAACTTTATGTTTTATCGGACAGGAGAGGCATACTATTTTG
GATCCGATCTTAGAAAGACAGTTAACAAAACGAGAATATAAAGCTGCAAA
AGAAAATTTAAAAATAACAGTCAAGACTCAAGCAACAATTCTCAAGAGTG
CGAAATTTGTGAAAAAGAAATTTAGCAGAGATGCGCATACTGAGAGGTTG
TGTATGCGAAAAGAATCGTTCAATGGACATTTTGATGAACGAATAGGATG
AATGATATCCACATACTAAATGAACAACATCATCATCATGTACACATATC
ACGAAAACACCACCACAGCAGTGAAACAGATATATTGGCATACAATGACG
CAATAAAGAAAATCATTTCGAGTCCGAATTTCAACAGCCGACATTTTGCA
GACCATGAATTAATGCTTTGCGAATCGTACTGTTTACTATGGCAAAATAG
TAATGGAAAACTTCAAAGTCCAATCGAAAAAAACGAAGAATTAAATCAAG
ATGGGGGATTTGAGATACAGTCTTTTGCAAAAACATATCATGGATCACAT
CTTAGAGGAGTATGATATCATCCCAAACAGAGGAGTTTCTACTGCTATGC
TGCTCGACTTGTACACATCCAAAATCATTGATTTTATGAGCTGTGGGAAT
TCATTGGTTATTGACATTGTTAACCCTGACCTTGCTTTAAACCCTATTCA
AGCCTTCATATTAAACATTTTGTTACGGCGCCGACCACGACGCAAAACAA
TACAAGACGTCTTGGCAATCTCCAAAACGTGTGGCTGTGCTAAAATAGTT
TTAAAGAACCTACGTCTTAGAGGTATCATTGGTGTCTCGGAGAGCGGACG
CCTATTTGCTGCAAGCGCACGACGACAAAGTACTATCCGTTTTGGTCCCA
TACGGAAAATCGAGCAACAGCTCAAGTGGGTCGCTTTGAAAGAGAAGTGT
CCTGATTCGTATATGCTTTCACTTATAACTTTATGTTTTATCGGACAGGA
GAGGCATACTATTTTGGATCCGATCTTAGAAAGACAGTTAACAAAACGAG
AATATAAAGCTGCAAAAGAAAATTTAAAAATAACAGTCAAGACTCAAGCA
ACAATTCTCAAGAGTGCGAAATTTGTGAAAAAGAAATTTAGCAGAGATGC
GCATACTGAGAGGTTGTGTATGCGAAAAGAATCGTTCAATGGACATTTTG
ATGAACGAATAGGATGAATGATATCCACATACTAAATGAACAACATCATC
ATCATGTACACATATCACGAAAACACCACCACAGCAGTGAAACAGATATA
TTGGCATACAATGACGCAATAAAGAAAATCATTTCGAGTCCGAATTTCAA
CAGCCGACATTTTGCAGACCATGAATTAATGCTTTGCGAATCGTACTGTT
TACTATGGCAAAATAGTAATGGAAAACTTCAAAGTCCAATCGAAAAAAAC
GAAGAATTAAATCAAGATGGGGGATTTGAGATACAGTCTTTTGCAAAAAC
ATATCATGGATCACATCTTAGAGGAGTATGATATCATCCCAAACAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003361-exon-sc0000026-1575043694:902628..902973 | TCONS_00003361-exon-sc0000026-1575043694:902628..902973 | Clytia hemisphaerica | exon |
| TCONS_00003361-exon-sc0000026-1575043694:901088..901336 | TCONS_00003361-exon-sc0000026-1575043694:901088..901336 | Clytia hemisphaerica | exon |
| TCONS_00003361-exon-sc0000026-1575043694:899700..900749 | TCONS_00003361-exon-sc0000026-1575043694:899700..900749 | Clytia hemisphaerica | exon |
| TCONS_00003361-exon-sc0000026-1510915933:902628..902973 | TCONS_00003361-exon-sc0000026-1510915933:902628..902973 | Clytia hemisphaerica | exon |
| TCONS_00003361-exon-sc0000026-1510915933:901088..901336 | TCONS_00003361-exon-sc0000026-1510915933:901088..901336 | Clytia hemisphaerica | exon |
| TCONS_00003361-exon-sc0000026-1510915933:899700..900749 | TCONS_00003361-exon-sc0000026-1510915933:899700..900749 | Clytia hemisphaerica | exon |
| TCONS_00003361-exon-sc0000026-1491911889:902628..902973 | TCONS_00003361-exon-sc0000026-1491911889:902628..902973 | Clytia hemisphaerica | exon |
| TCONS_00003361-exon-sc0000026-1491911889:901088..901336 | TCONS_00003361-exon-sc0000026-1491911889:901088..901336 | Clytia hemisphaerica | exon |
| TCONS_00003361-exon-sc0000026-1491911889:899700..900749 | TCONS_00003361-exon-sc0000026-1491911889:899700..900749 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:899700..902973 - |
Blast
The following BLAST results are available for this feature:
|
