TCONS_00003356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003356
Unique NameTCONS_00003356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003356 ID=TCONS_00003356|Name=TCONS_00003356|organism=Clytia hemisphaerica|type=transcript|length=1501bp
CAATACTGCTTAACCTTCAAAAAAATATGACAGGTTGAATTGGGAATGTC
TTGCGTTAAAAGAAATAGTTCTATCAtcacaaaatcacaaaagaaataTG
TGTTTGCAAGGAGAATGATATAACTTCAAAGTTCAAACTCAATATAAAGA
GATTTTGAATCTTGCTGCAAAACTTGCATGAAAATCGCGCAAAATTCTAT
GAATAATCAATTCAAATTAACAAATCTctgtttttttggaattattgAAT
AGACTGATACCTCCATTGGTATAATATAAACAGCGGTAGTGGTTTGGCGA
CATATATTGAGGGAAaaagaagatttgaaaaaaaaaggaaatagaaACAT
TAAGCATTACCAGTTTTGCAATTTGGAACTTCTCAGTTCTATCAAAAAGA
CGAAATCAGCAAAACAAAAAAGCATTCTTTCGCCCACAACGTCCATATAT
CGTTAGAGTAACATTCAAAGTGCAACCTTTATTTTGCTGCGTTTCAACGA
GGATTCAAAAGTTTCAAGTAATCGAAGATCAATTATCGATTGTATCGGGA
GATGGATCGATTTACGGAAGAACAGATTCGAGAGTTCGAAGATGcttttt
gtatgttttgtaAATACGACAAACAAAATAATGGATATATTTTGAGCACA
GAGCTACGAGAGATGTTAAAGATCGTTGGTTTCAACCCGACCGACTCGAC
TCTCGAGACGTTAACGATTTTAATCGATGAAGACGGGAACGGAAGAATCG
AATTTACCGAGTTAGTCGATTTAATCGATAAATTAGAAACTCAAGAAAAA
GCACTAAAAGAAGcacGTGATTCGTTCAACGCGTTCGACTTTCTTGGTGA
AGGATTTGTAGCAGCCAACGATTTAAAAGAAGCTTTGTTTTACATCATGG
AGAAAGCTTCAGAAGAGGATAAACAAAATATCGTCAAACATTTCAAactg
GAGAAAAATCGTAAAATCGAATTCGAAGAATTCAAGGAGATGattatcat
gaaaaaataacgccCACCTCCTCCTCCCTCATTCAAATACGCCCTTTCAC
CCTGCATATCATATTTTCGCAGATTTTTAGTATAAAAGTGATAAAAGAAC
TGAAGCGTGAATGTATTCAACCATGTTGCGTGATAAAGTCATTTTGATGT
CGttggttttgaaattcttaTCAGTACGATGGGTTCTTCCTAAAAGATTC
CGACATCGGTTGAAGATATAACATTTTTCAGGAGTTGACTCCGGATATGA
GAATTCAGAACCATCCCCAGGCTAAGAACTTTCGGACAACCAGTCTGAAA
TCCTTGGTTTATACTTACACAAATGATAATCAGTCAtatgtaaatatatt
ttttgttacCGTTTAACTGGAAATAATTATTGTAGATTTTgtaaaattaa
tgttttttctgataaaTTAACATTCACAATTTGTTAAATAAATCTATGAT
CCGAAACTTAAATTCTTTGAATCTACAATTTAGAAAAGTTCATTAGGGTT
A
Run BLAST on NCBI

protein sequence of TCONS_00003356-protein

>TCONS_00003356-protein ID=TCONS_00003356-protein|Name=TCONS_00003356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MDRFTEEQIREFEDAFCMFCKYDKQNNGYILSTELREMLKIVGFNPTDST
LETLTILIDEDGNGRIEFTELVDLIDKLETQEKALKEARDSFNAFDFLGE
GFVAANDLKEALFYIMEKASEEDKQNIVKHFKLEKNRKIEFEEFKEMIIM
KK
Run BLAST on NCBI

transcript from alignment at sc0000026:776353..792509-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003356 ID=TCONS_00003356|Name=TCONS_00003356|organism=Clytia hemisphaerica|type=transcript|length=16157bp|location=Sequence derived from alignment at sc0000026:776353..792509- (Clytia hemisphaerica)
CAATACTGCTTAACCTTCAAAAAAATATGACAGGTTGAATTGGGAATGTC TTGCGTTAAAAGAAATAGTTCTATCATCACAAAATCACAAAAGAAATATG TGTTTGCAAGGAGAATGATATAACTTCAAAGTTCAAACTCAATATAAAGA GATTTTGAATCTTGCTGCAAAACTTGCATGAAAATCGCGCAAAATTCTAT GAATAATCAATTCAAATTAACAAATCTCTGTTTTTTTGGAATTATTGAAT AGACTGATACCTCCATTGGTATAATATAAACAGCGGTAGTGGTTTGGCGA CATATATTGAGGGAAAAAGAAGATTTGAAAAAAAAAGGAAATAGAAACAT TAAGCATTACCAGTTTTGCAATTTGGAACTTCTCAGTTCTATCAAAAAGA CGAAATCAGCAAAACAAAAAAGCATTCTTTCGCCCACAACGTCCATATAT CGTTAGAGTAACATTCAAAGTGCAACCTTTATTTTGCTGCGTTTCAACGA GGATTCAAAAGTTTCAAGTAATCGAAGATCAATTATCGATTGTATCGGGA GATGGATCGATTTACGGAAGAACAGATTCGAGAGTTCGAAGATGCTTTTT GTATGTTTTGTAAATACGACAAACAAAATAATGGATATATTTTGAGCACA GGTATGTAGTCTCCCTTTCTTCATCACATTTTCCATGAAAATGATACTTT GGGGGCAGCACAGACATCATCACTTAAGATTCCAGCTATCTTCCTTTCAA TTTTCATATAACATTAAAATTCATAGCAAATAAGCCTTTGGGCCTTTCAG ACCAAAAACAACTTAGCATTCAAAACTTTTAGTATGTTTCCCATGATTAC CTTATTGGAACTAAACGTAAAAACGAAAAGAAAGTTCTAGATACAGTGCC GTAGCAACTGGGGGGGCAAGGGGGGGCTATGCCCCCCCAATAATTTTTTC AAAAATGGTTATTTTGCAAAATGCAAAGTTTTTCTTTTTTAATTGGTCAT AATTGTCACAATTGAGTGCATTTTCAAGCAATCTAGAGCTCAAATTTTCA AAATTTTCCCCCTAGGGCCAAACCATGGTTGGCCCTCGCGGTGTCACTAA ACTTCAACCCCCTCAATATGTACTAGTTATCGCATGACTTCGAGTGCAAT ACNCGCGGTGTCACTAAACTTCAGCCCCCTCAATATGAAAATGCTTCCTA CGGCACTGAGATATAATCCGTCAACCGAAATGCGGTGCAAGTTTTAAAGG CTTCGCTTTTCCTTGCTTGGGAGATTCGCCTTTAGCCGAAGGCTTGAAAC TCAAGGGACATGTCACTTAAGATTCAAGGAGTCGTGCTTACAGATAGTAT ATTTCGTAGGTCTCTTTTGAATTTTCTTTTATCAAGGAAACGCAGATCTC TTTAGGGTGGGATTACTTTCCTACTTTTTGGGTCTTGAAGTTGAAGACAT TATAATTATAATGGTCATAGTTCCAACAATACGATTTTTGAGATTCAGAA AGATATTTCTTTTGTAGAGCTACGAGAGATGTTAAAGATCGTTGGTTTCA ACCCGACCGACTCGACTCTCGAGACGTTAACGATTTTAATCGATGAAGAC GGGAACGGAAGAATCGAATTTACCGAGTTAGTCGATTTAATCGATAAATT AGAAACTCAAGAAAAAGCACTAAAAGAAGGTATGGTTTTTACTTTTCCTC GTGTTCTATCTTAAATCAAACGGGTTTTTAGAAACAAAATATTCCTCGTA AAATTTATTTGATGGGATGTGTTCAGAGATCTTTTCCAAATTTTATAACA AAATATAGGTTGCCTTGCCCCACCTCTCAAAATCTGAGGTGCGATAGTAG GATAGAATGGCGTTCTCTCGAGAACATCGCTGGAAACAAGACTGTTGCAA AGAGCACAAAACAGATGCCATTCTCTCTCGTTGGTCTTATTTTTGAAGAA AACAAATAAATCTTTCGTTGGCCTCAAAACATTACTTACTACAATCTAAT TCCCTGGATGACTTCTTTTGGAAATGGGGGGGGGATTTTATGAGCTATTG GAAAGTGTCCAGATTTGTATGCTTTGTCCAAAAAAACTATGCTCTCGTTT GAACCTAGAGTGTCTTAGGTAATGTTTTCCGCCAATGATGGGGTGGGAAT CTCTGAATTAGTGGCGTTTCAATATGAATATAGAATGATGATTTTAAGAT GATATCAATTGAGTATACAAACCTATACATAATCGATGTTAATTTATGTA TAGTCTATTCATGTTTGCGGGTTACAAATGAAATATGTCATAGATGTAAC TTTAATGTCATCAAAAGCTTGTTTAGAATTATTATTTCAGAATAATGAAA TATTTTGGCAAACTTAAAAAATCTGTTAAATTTCTTGGATACAATTTTCA GATAAAGTTGTACCAAGTTTAAAGGTTTTAGGGGGTTGTACCTTTTGAGA CTTTTCGTAAAAAATTTATTGTTACATGAAGTTAATAATCTTTGCAAATA TTGAGAATTTTATGGTGATTAATTTTGAGTGATTTTAAAGATTTTATAAC GTTGGAAAGAAAATTTATTTGAAGGTACTTGTCGTTACAAGGTGGAGTGA TTTGTAATTCAAACCACCCTCAAAATATCAAATCGCAAAAGCCAAGCAAT TTTAAGATTTGTAATTTATAAGTTTCAGAAAAGTTTTATGAGCCAGCAAA AGAAACTTTCTTTTCTTGTTTTAAAAAAGAATACGTATTCACAAAGCATT ATAAAGAAAAATGGATCGATTTTCTACCGATCAAATTCGAGAATATGAAG ATGCGTTTTGTATGTTTTGTAAATACGATAAAGAGCAGAAAAGCTATTTA CCAACCACCGGGTTGAGAGATATGTTAAAAACAATTGGTTTTAATCCAAC CGATGAACAACTCGAGAAAATTACTATCGAAGCAGATGCGGATGGGAACG GTCGAATGGAATTTCACGAATACATCGATTTAATCGATAAACTTATCACG GAAGAGGATGAAACGAAAGAAGGTATCTTACTCTTACATTCTAAAACTTA ATCAAGCTTACGACTGTTTTATAACGGGTCCATCAAAATGAATCGGGCCT AAATTCAAATTTTCACGTAACTATTTTTACTCGAATATCACGAATGAAAT AAGGTTCAGCCAAAATTAAATACACCAACTTTACATCTATCATCTAGAAT TGAATTCGAATACATATACCAGGGTATAAAAATCTTTATTTGTGAAAATA AAGCTGATTGACGTCTAAAAACGCTGTTTTCTGCTGTTTTCTGCTGTTTT TTGGGGTCAATCACTTATTAACTTTGTATCATAACTTTATATTGAATAAA TATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTGATGATCTC CTAAGATCAAAAAATCTCTCCAGTGAAAATGAAAGTTATAGCACTTCTCT ACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNCTAATATCTTTCCAATGATACCAAACT TATAAAGATTGAAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAG TGCACACTTATCGTGAACAGACTTTAATTCCCGGGATAACCAAAGATGAA TGAATACGTAGGGTGGGTACAGTCACTTTTGATCGGGGTTGTGGACGGCG ACATTTGTCGTGCTTTTTGTCTATTTTTAGTAATGCAGAATTCTTTAGAT AAACCCCCTCTTAGTTTAGAAGGGGGTGATATCTTCTCTCCCTTATTGCA CCCCTTACCCTACGTGAAAAAGATACTCTGATCTTTCATTCCTAAATGGG AGAAGTTCACTGAAATTTCATCTCTTTCTTCATTCGAAGCTACATATAAT AGAACTTTGAATTTCAAAAAAAGCAACAAAAGAACAGCAGGTGGCGCTTA ATGGATTATGGAGGCCGGTCTCCACTTGCGTGCGCTGCGATCGCTCTTCT TCGAGCAACGCTTCCACGCTATTGGTCAAAAGAAAAATGAAGCAACTCCA TTGGTGCGATTTAAAGGGTTTAAATCTCAGTAAGAGTTTCCCCAAAACAA ACTCAGACTGGAATTTCAAATCTTTTTTAATTTTTTGTATCCATCGTAAA ACGTATAACAAAATTCAGAATTTTGTTTATAGGGACCGATTTTTCAACTT TATAGCTGCAGGATATATCTGTCACAAAGCAAACTTAGTATTTCCTGGAT TAAAACAATAGATAACTACTAGTCGAGCCAATTTTAATCCATGCAATTGT ACTTTCCATTTTGACACCATTTTGATACATTTTACTCACGCTAAGCCGAT TGAGAAAATTTAAGTTGGTTTATAAAACATTTACACCCGGGGCTTTCTCT GTTTAGTTCTATTTTCTTAGAAAATGTAAATTTTAAGAATTTGTTCCCAC GTTTCCGACATATGTTTTCTGTGATAATTTTAAATGGTTTCTTTTATGAG GAAGAAACCAAAAAAAAATGGTTGAAATTACCCTGAGATTTTATCCCAAG CTCTCGCCAAGCTCTCGTCACATCTGAAAAAAAAAAAAATTCTTGACGAA CCCTGCTTTTCTTTTGAGCTTTAAAAATCCCGTCCGATAAATACAAGAGA TTCTTTATTCCGACATTAAAAGCTCCGTCACTTTAACCCTCAGACTTTAT CACTGGCTCGCCATGGTACAATTACCCGAATGTGTACATCCAATGTTTAA CCTCATTTGTTCAGGAGATGTGATGCTGTTTTAAAAATAGCAAGCATTGC CTTTTTTGAGAAAGCTATTCTTGAGAAATTTGATGTAGATCTTTTCGATC ATTTTCATCCAATTTTCCCAGTTTTGAATTCAGATAGAGAAACAATGATT CTATACCGTTGAAAAGATAACTCAGAGCATTATAATTTTTGAGTAAACTT ATCTATATAACAATAACTGTACCTGTCTGATACCTTTTCTCTACAGCGTT TTGATTTCGCTAGCGATTTTAGATTTCCGTATATCTTTTTCCGGGGGGTA TGTTTTAAATTTGCATCAACATTTATAGCCTAAACACGGATGATATTGGT AATTCTTGATCCCCTGATTAGTGGCCATGACTTTTATAGATTTTAACAAT AGAATGAGGAAGCATTGCGCAATCCTCCACGTTGAATTTTGAGTGATCTG TCATCATTCTTTTGTGGTTTTTAAGGAAATTTCAGAAGCGCCTCTATTCC TCAGATAATGAATGAAAGATTATTTTGAAATTACACTCGGACTTCATTTT TAGTTTTTATGAGTAGAAACATGTCTCACGATTTCCAAAGATTTTCAAAG TCTTAAAAGTCGTACTCAAATGGCTAGTCATGATGGCTAAGGAATCCGTT TTAAGAAACTCATTTGTGGTTGAAATTAACATTTCAAGGTCATCTTATTA AGTTAATAATTTTTAATATATAGTTTGATGTGCTCTCTTCGATGTAGGCA GTGAATTAGTCAAAACTGTTCAGTGACGACGGCCTGCGACCACCAGTTTT AATAATGTTTGTAGAACGAACGGTTTCATAAAATAAACCCTTTCCACATG TTTTTACTCCTTGTTTGCAATTTTGAAAAGGGAATTTTCGGCGTTTTTTT TTCTCTAATGTGATGTTCAGGTTGCTTCCAGTGCAAGGTTTTTAAGATTA GAATTGATGATAATCTCGAGATCGAAGTTCCATGAAGTTCCTTATTTTTG AAATCATATCATTTTTCAAATCGATTTCAAATTTGAATTTTATCTTTTTT GGATTTCAAAGTCTATCTTCAAAAAAGCCAGTCTGTTTCTCTCATAATCC GATTTTTGAATCTAATTTCTATTTAAGGATTTTTTGGTCCTTAAAACAGA AAAAGAAAAACTTGGGGTTAATCTTAAAAGTCTTATTTTACGAGGGGACA TCTTTTAGCCCACAAGGTCTCAATTTTCTAATTTGACTATTTTTTTCTTT TTTTTGGAGGAAGAGTCAATTTTTCAAAAAATTTTCAAATTTACAATAAA GATTGTTTTGTCTCTTCCTTAAAACTTTCGGACCTGAATTAAAACAGGTG ACCCTTAAAAAGTTTTGATTCTAGGTGTTTTCCCGACACTTCAGGTTCTT GTCAATTTTGACTTAGTTTCTGATATAATCGATACGAGACTCGAAAAGTA CGGGAGCTTTTGCTAAGGCAGCGGTCATAAAGTATCTACTAAAGGGGGGT GGAGGATTCTGGGGGGGGGGTTGANNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA GGGTTTAGGGGGGTTCCAATTTTTTTTGGGAAACTCAAGAGAAAATGTAG GAAGTCTAATTTCATAGTTTTACGTTTGAAGATTTCAAAAAATTTTCGGC CTTACGGCCGACAACTCATAATTTATCTTATTGGATATATCTACATTTCA TATTGGTATTATTTGGGCATCATCGCCTTGCCCTTTTGCTTTGTAACATT AAGCTACGTGAGGGAAGTAGATTAGTGGCTCTCACAGCTCATCAGAGTGG TTTGAAAAAGTACTTCTTAAAAGAAATTTGTCAAAACAAAGTGTCTTTTA GCTAAAATGGTGGTGAAAAATATTGAAATTTTCGCCCGTCGGCGCAAACC ATGGTTGCGCCTCCTTAGCATCTGCTAGTGTCAAAACACCTTAACATTTC AAATTACAAAAAGCAAATTCCAAGTTTCTTGACTCAAAGATTCCGGACGT TACTTTCAACCATACTGCTCTTACAGTTTAATATTTTCACTTAATAATGG AGGACGCAAGTAAGGACAAAAAATACCAGGGGCGCCAATTTCATAGTTTG CACCCCCAGAAAATTAAGCCAGGTCGCTACTGGGGAAAATAAGCCTTATT TTTTTCAAAATTTGACAGAAGCTCAGAGAAAACCACTTGATGATTCTTGT CTTAACCCTGTTATACTTTAACTTAACAGGGCTAAACTATCTCCCTTCCC TAATTTTGACATAAAAAACTGTCATACAAACAAATAATACTCTTTGTACC GCATCTGGATCAATTCTTTTTCGTGTAAAAATTTTCTTAGTAGGGGGGGG GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCGAAAATTTTTTCCA GGTTAGGGGAGGGGGTGCGAATTTTTTTTGGATTTTTCAAAATATCCTCC ACCCCCCTCTAGTAGATACTTTATGACCGCTCCCTAAGCAGCAAGTTTTA TTGGGTCACCCTTTTTACTCTTTTTAACGTAGCGAGGATTTGCTCGGTGA TATGAGCGAAGCACATTTTAAGTCTTTCAATAATTACTGTTTTTCCTTAT GTGTGATCTTGCCTGGAAATGTTTGGATTTCGACCACAGATTTCCTTGTG AGAAATCTTTGAAAGTAAAGGGTCTATCACCATGCTTCCTTGACATGCCT TGTATTGGAACACCACAATGCATTGCGGTGCAAGTATGTAATCGAATCCT TCACAATACCAATTAGCGGAATGTTAGCGAGACACGGTGACAATGATAGC CTTATTTAGATGGTAAATGAATTCATACAGTGTTTATCGTTCTACATCTG CAATTTTGAGACTTTGAGACTAAGTTGGTGTGACGTCAATCGATACTTCG ATTATCAATTGGTTTTGAGAGAAAGTGATATATCAGTAAAAGTAGAGAGT CTATCACAATGTCTCCCTGACGTCAAAAGAGCTTCGTAAAAATCAAAATT GCAGATCTAAAACGATGATTTTGGTATACATAAGAAATCTCCCTCAAACC AAAAGTGAATTTTATCGTGTGTTTTGATTTAAAATCAACTAATTGCTACA GTGCTATCTCTTTTTGGAAGCAAGATTGTTATCGGGAGTTATATTGACTT GTTTTGTTGCGGTCACAAGAGGTTGAAGTCAGTATTAAAAGAGATTTTTA CTTCAAATTAAACTGAACAAATCTTACGAGCCTGTGTATGGAAAGGGAGG GAGTTCAATCACAAGATGGATTCTTCTTGTATACAGTAAAGGGTAAAACT TAGTCTGGCAAGACTTTCTTCGGGGAAAATTTAAGTCGTGGAAAAATCCT TGTCACATCTCTCTTGTAGTGACCAGAAAGGTTTTTCGCCGGGGAAAAAC TTTGTCAATTGCCTAAATATTTCGCCACTTTTTCCTGGCTAATTTTTTCC CTTCAGGGTATATACTGTGACACCCCTGTTTTATTGAGAGTCACTTGGCC GCATTGGAAAAATGCAAGAGGTGAAAGCAAATGGAAAATTGTGTTAAGAA GCCTATTGTTTGATGAGTGTGGCTCCAAATTTTGTATGAAATTAATTTTA CCAGTGGGGTTTATTGAGTGGATAGAAGAGTTCCGTGAGTTTTGAAATAG GGGGTGGAATTTCGGGATATTGTATCAACTGGGGCGCTCGACTGGCTCAG TGATATAGGGTTTGCTGGTAGCTTTAGTAGTAACTTAATGCCAGGTGTAA AAATTTCAGATTCTGATAAACGGGGCGGGGGGGATCGGCCGAGGATTTGA AAATGCTGGTTAGGTTAAAGTATTGAATTTTTATGATTGAATAAAGAAAT TTCATCGTATTAATTCGATAATTCGTTTTGTGGATTTTACTTTATNGAAT AAAGAAATTTCATCGTATCAATTCGATAATTCGTTTTGTGGATTTTACTT TATGGATCAATTTATTCCGCTGTTTTTTCTAGACGCGCTAGGCCAAATGG CTCAAATATAAAAAACCATTTCATTGTCCCTTTATCAAGAATGACCTAGT TGCTTATCTTTCAATATCATAAAAAACTTTATCCAGTATGGTGCGATAAA CAGATACGCCCCTTTCGCACTTTCTCAGTCCGCCCTAAATCAACTTTTCT TCGTCAGTGGAATAGCTTTGATTCTTGTTACTCCGCCCCATTGACTAAAT GACTTATTAATTTTTATAGACCTTTCTTGCCAAAGTTTCCCCTTCAAATA ACCTACGCCGCCCCTTTTTAAGTTTACCTGCGGATAATCTTTAAAAGAGC AAGGTTGTTTTTATTTCTCAAGCAGATTTTTGTCTTACAAACCCTGGTTG GACATCATTATATTTTTGTCTTTTTTTCCTTTTCTCTTTACTTTACTATA TATTTTATTCACTTTCTTCAACTTTGTAGGACAATATTTAGTCGTAAAAT GTCTAGCTTTATTTCAACAATTTTCTTCGTCAATATATATGGTACTGTGG ATCTTCCTCTTTTTCTCCTTTTTTAAAGCAAAAGTAAATGGCTTTGATGG TTTAATGTTTTTACAAATTTGTGTTTGGTCCTAGGTTTGGTTAGTTGGGT TTTGTCAAATCGAAATAAAAATTAAGTGACGATATCAGGAGATTAAGTAT GTGGTAGATTTGTCGTTAATTACCTCAACTATTTGGGAAAACTGGGATGC AAGATTTGGGCCTAATTCGAGTAGCGAGTTTTATATATTTGCAGTTTTGA GGACGTCAGAGTGGCTGTAGAGGTTTGGAAAAACCCGCAGTTTTAAACCG CAAAATCGAGGACGGTTAAGAGTGCTGATTTACCGTCGTCCTCAGTTGAT CAGGATCTAGACAAATCAAAAGCTATTCGTATTCGTCGCTGAAAGTTCAT AAAAACAAAAACTCGCTACTGGCAACGTGTACAGTTCACTCATCTCATAA TGAGCAGATATCAGTGAGAATTAGAGAATAAGTATGCGCTAATAAATAGT GCCTACTTTAATACTTACTTTAGAATGTCTTTCTCAACATCCATCTGTAA AAGTCCCCACTGAAAAATTCACTAGAAACATTGTCACGGGTGGGAAGAAT ACGATGAAACCACTCCATTCGTGAACTATTCCGAAGAACTACCCCCCCCC CCTCATGTGATTAGTACTAAAATATGAAAACCCGGATTAAAAATACAAGA CATTTTCATTCCCCTTTGGCGCACCGAGCTCTTTCAATTAGTCCTATGGG CATTAACTTAAAAAGGTCTTAACAGATCATTGAGAGACCAGGATATTTCA GAGAGAGTTGACTACGTTTCTCGCCTGCAAAATTCTTTGTATTTAAATGT TATGCTTTATGAAAGTTGAAATATCGTTGTTGCTAGTTAAGTTGAACCAA TAATTCCCAATATCTCATGCTATTCAAAAAAGAATTTTCCGGATATGATT TTTAGTTGCCAGAGCAAATCTAGGCTGCTGGCATCCACTAACGGATTCGT GCTCCTTATAGATATACTATACTACCTGGGGTTTTGTAGAGGTCTGCGAT TCAGACTAGAGCAAATCATAATGTTTGATTAGCATTAATCATCGCTTACC ATATGGGAAATTCTTCCTCTTATTTTCTCTTTAAAGGAATTTCAACCTGT TTTTTCTGACTACTGATGAGATAGTTGAGTATTTCCGCTGTGTTTTTTTT ACCTCACCGTGAAATTACTCAAATCTGCCTCTGGAGAGATTTCTGTCCTC ATGGTTTTTCTTCCTTTTCTTTTCCATCTATTATTTAGTTTTATAAGCAG ACGTTAATTGGAACTTTAGGTTGTTATGAAGGTAAATGTAGAATTTCTAA ACGCTAAGATTTGCTACAAAAAAAACTGAGTATGAAACTTGAAATTCTCA AGTGTTGGATACAAAAAGAAGGCAATTCCAAAAACGTTGCATAATTTTTA CAAGATCTATACCAAGTATATAATTGCACGACGTAATTTTTATCAATCCT TGAAAGTACGGTTCTTCCTGTTCCCCAATTTTTCCCAAGTCTCGTCTAAT CTAATAAGAAGTGATTAACAGTATTTTCAATTTTTTCGATATTTGATTAT TTTTTTACACACATGTGTGACAAATGCACCAGACACTTCGAAACAGAATA GATTATTCTTTCTATATGCATCTTAAAACGGAACAGTATTTTGTTCAAAA AAAAATTCGGAGACATTTATCTTAAAAAAGCTAATAACTTTTAATCTTAT TTTGAATAATCTTTATAGTATAATTTATTATATTTCTTAAGTCCTTTGAC TCCTTTCAACTTTTTTGCCCTTTTCTTAATTAATTTTATTTGTAAAAAGG CATTGTTTTAAGACAATGTTCGACTCTTGAGCTTAAATATGTTGAGATAA CAGTCTCTTATTACAGGAAATCAGCTTAAATTTTGGCCTCAGTATAAATT TCGCTTGAACAGCATAATTTGAGGTCATATTTTGGAGGGCATGGTCTTGA AATGCTATAACCTCTTTGGTTGCTTGTATTTTGTGGTTTTTTATTTCAAA TCATTTTTATCCAGCTGATCCGATTGATCCGTGGCCATACTCAATAAGAG AAACATGTTCACGTTAGCGGGTCACTCCGATGATTTTCATCATCAAAGCC AGGGGGTTTTAAATATAATACCTAATTATTTGAACAAGAGTAAATACTGC CCAAATTGTCAAACTGATTGAGATCAGGTCAATTTTTGGACAGCGGAAAT TCTTCAATATACTCGACATCACGTGATTAATGAAAAATTTTCTTCTTTTC AACCCTGCTGATCACCATAGGATTCTAATATTACTGGTTAAGGGTATTCC AACCCTTTTTTATTAGGCAGATATTTAACAAATTAACCAAACCTTTAATA TGATATGTTTCAGATTTAGAAATATAGTTTAAGAGATCAAAACATTTTAA GGTGGAATATAAAGAAGAAAACATCTATTTTGAATTTTTGTGAAGAATGT GATACATGTTGTCGTATTGTACTTTCTGATTGGCTGAATTCATTCCTCCT TGAATTCTGATTGGTCGATTGTCATTGTTGTTCAATTCTAATTGGTTAAT CACATGATTTGTACCTTCTGATTGGCTGATTCATTCCACCATTCTTGAAT TCTGATTGGTTAATTATCATTACTGCTTAATTCTAATTGGTTCATCATGG AAGATCACATTACACAGGAGAAATTGAAAAATTACAATCAAACTTTCCAA ACTTTGGATACGGACAATAAAGGGTTTTTAAAACCCAAAATGATACGACA AGCGTTGAAGCACGTCGGTTTCAACCCCACTGAAAATGAACTAGAAGAAA GCTTGATAGTTATTGATGAAAATGAAAATAACCGAATTGAACTTGAAGAA TTTTTGAAATTAACTTCGCAACTAGAATCAAAGACTAAAGCAAAAAAAGA AGGTATTATCAGTGTTTAATATTGAAAGTTCTATCTGCTCAGATGACGGG TTTTTGTCTCAGGAAAGTATAGAAATAGGCCTGTCCGTCTCAAAATTTTG CAAAATTTTTAACAAACACGGTAAAATTTCCTGCGAAAATTCCCTTCTTA GCTCGAAAAATTTGCTTTGACCACTCACTGTACAAAATTTAAGTTTATTT ATAACTCCCTGGTTTCCTAAAAGATAGGAACAACTTAATAAATTTGTGTG TGAGGTTTTCATAAGTCAGAGCGCATGTCTCCGTTAAAACGAGATCAAGA CTTTTTATCAATCGAGATCGAGATTTTCAAACCTCAAATCTTTTTCGTCA TTTTGTCCAATTAAATAGGATTTTAGGTTGGATATCAAACGAAAAAGTTC CTCCTGAAAGTTTGTTTTTAAGTGAAATCCTTTTTTGTGTTTTGGTAGAT TTGTGGGCTCAGGAAACTACCCCATGGTCACACTCGCCGATTGATTCAAT AAATACTCTGCGAAAGCTTTATTTTAAACAGTTTGACCATGACAGGCTTG TTTATCAAATGTGCCAAAAATGATAAAATTCTATTTCATGGAAGAAAAAA AACTGTCGATTGATATAAAATTGTTTGCAATATTTTTGACTAAGTTAACA CTTTATTCAATGCTTTATGCTGTAAATTTGTTTCCTAAATTAGAGTTTTT GACTGAGCTTTGATTTAAATGATTCAGAAATTTAGCACGCATTTTCAATC GGTGCTTCATCGTAAAATTTGTGCTTAACAGTTTTCTTGAATAAATGAAC TGCGTAAACTTAATGATTTAAAATCATTCTCGAAACCATTGATTCGAAAA CGTTAGTTAAGCTTAAAAAAATGTCTGCCTTGTATTAGCGAAAAAGATTG CAAAGAGGTGGACAGAAAGACGTAGTTAGACCGACATACTTTAAAGATCT TAAACTAAATTTATTCCCGATAAAAACATTTTCTGGTATTTACACCGAGC ATTGTGGAAGTCTTATCACACGATTCAATCAATTAGTTGAGAGATATTCG GTATCGCGATTTCAAGAATTTTTACGACGCTAAGAAAGGGAAGCAGAGGA TTGTTTTAAATTTTGGAAATTTTCGTTAAGATGGTCAACATAACTTTAAG CGAAGAACAAAAGCGAGAATACCATGATTGTTTTTGTTTGTTTGAGAAAA ATCGTGGTTTTATTAAGCAAGATCAAGTTCGAGATTGTTTACGTCATGTT GGTTTCAACCCAACCGATTCACTCCTACAAAATTTACAATGGGAGCTTGA TAGTAGTGAGCAGGGTCGGTTAGGATTTAAGGAATTTCTTGAATTGATTA CGAGGCTACTGCAGGAAATGGACCAGGCTAAAGAAGGTTGGTTGCCAAAA AGATTGGGAAAAGAAAACGTAAATTTAGGATACGCTATATAATGATCTTT ACCTCAACGATTACTGCGGAAATTTTAAATCTGATATATCTGATATATCC GTTAATTTCTGCAATCTTTTTAATTGCGTACCTTTTTTCCCGCGCATGAT TTAAAGAAGGATATTCGTAAATCTCGAATTATGCCGGCCCCGGAACAAGC CTTACAGAAATCTGAGCTAAAATCTGGCCAAACTCAAGAGGATTTTCAAA AATTGGGAAAGGCATTGTATCAAAACTTTCGCTCAGTTTGCGTTGATAAT TTTAAACATCAAGAAAATTGATACACGTGTAGATCACCTTTAATAGATGT ATTAGGGAGATGTATTAAAACGAGGAGTAATATTTACAGATTGGTTACTT TTGTCAGATGAGTTCCTTATGATGATAAAGCCTCGTATTGGAGAAGATAT AGAGATTACACACTTGGAACAATGAAAAACTAATCTACGTATTTTTTAGC GGGAAAGGTTAAGTGTAGAAATATATTCTAACCTAGCCTAATTATTTTTC TTTTTTAGCACGTGATTCGTTCAACGCGTTCGACTTTCTTGGTGAAGGAT TTGTAGCAGCCAACGATTTAAAAGAAGCTTTGTTTTACATCATGGAGAAA GCTTCAGAAGAGGATAAACAAAATATCGTCAAACATTTCAAGTGAGTGAT GGTGTTTTTTAAACAAAACCAGTCTTCACGAAATTTGGAAAATTATTAAG TTAAAGGTTTTGTTTTTAAATAAGAGTGAAATCGTTTGCATACTCGTCAA TTTTAATTCACAAGCTTTTTCACATTGGATTGACACGTATGTGGAGCAAT ATTGATCAGAAAGAGGAAAAGAAAAACAAATTTTTGCTTATATCAGCATA TAACAATAGGCAGACGCACTGTCCTGATATGAAATATGTGTCTGATATAA AGCGAGAACACTTATATGTAAAATGCCACATTCTGATTTATGGGGCAAAA GTATTTTAGGCTTTTCACCGACCCTTTAATCCTTAAAACACCCAGTCTCA GTATTGTTTTAAAATTGTTCTTATTTTTTGAAGATTTTGAGCCTCCTTGT TCTTATAAAGTTACTCTCATAAAAAGAGAGAGTTAATCTCATAAAAAGAG AGTTTACGCGTATAAGAAAAATGGTGAAACCGTCTGGCTAGCAAAAATAG CTGATCTATCGATATTCGCTTTGAAGGCTAAGGGCGTCAGATATCATCGA AAGATGCACACTCGCTGAGATTTCCAATACCATATCAGGTTAGTTGCACT TTACATCAGAAAGAATTTAACTTTTTAACGGTTTTTACTTTTTATTTTTT AGACTGGAGAAAAATCGTAAAATCGAATTCGAAGAATTCAAGGAGATGAT TATCATGAAAAAATAACGCCCACCTCCTCCTCCCTCATTCAAATACGCCC TTTCACCCTGCATATCATATTTTCGCAGATTTTTAGTATAAAAGTGATAA AAGAACTGAAGCGTGAATGTATTCAACCATGTTGCGTGATAAAGTCATTT TGATGTCGTTGGTTTTGAAATTCTTATCAGTACGATGGGTTCTTCCTAAA AGATTCCGACATCGGTTGAAGATATAACATTTTTCAGGAGTTGACTCCGG ATATGAGAATTCAGAACCATCCCCAGGCTAAGAACTTTCGGACAACCAGT CTGAAATCCTTGGTTTATACTTACACAAATGATAATCAGTCATATGTAAA TATATTTTTTGTTACCGTTTAACTGGAAATAATTATTGTAGATTTTGTAA AATTAATGTTTTTTCTGATAAATTAACATTCACAATTTGTTAAATAAATC TATGATCCGAAACTTAAATTCTTTGAATCTACAATTTAGAAAAGTTCATT AGGGTTA

Coding sequence (CDS) from alignment at sc0000026:776353..792509-

>TCONS_00003356 ID=TCONS_00003356|Name=TCONS_00003356|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000026:776353..792509- (Clytia hemisphaerica)
ACTGGAGAAAAATCGTAAAATCGAATTCGAAGAATTCAAGGAGATGATTA
TCATGAAAAAATAACACGTGATTCGTTCAACGCGTTCGACTTTCTTGGTG
AAGGATTTGTAGCAGCCAACGATTTAAAAGAAGCTTTGTTTTACATCATG
GAGAAAGCTTCAGAAGAGGATAAACAAAATATCGTCAAACATTTCAAAGC
TACGAGAGATGTTAAAGATCGTTGGTTTCAACCCGACCGACTCGACTCTC
GAGACGTTAACGATTTTAATCGATGAAGACGGGAACGGAAGAATCGAATT
TACCGAGTTAGTCGATTTAATCGATAAATTAGAAACTCAAGAAAAAGCAC
TAAAAGAAGATGGATCGATTTACGGAAGAACAGATTCGAGAGTTCGAAGA
TGCTTTTTGTATGTTTTGTAAATACGACAAACAAAATAATGGATATATTT
TGAGCACAGACTGGAGAAAAATCGTAAAATCGAATTCGAAGAATTCAAGG
AGATGATTATCATGAAAAAATAACACGTGATTCGTTCAACGCGTTCGACT
TTCTTGGTGAAGGATTTGTAGCAGCCAACGATTTAAAAGAAGCTTTGTTT
TACATCATGGAGAAAGCTTCAGAAGAGGATAAACAAAATATCGTCAAACA
TTTCAAAGCTACGAGAGATGTTAAAGATCGTTGGTTTCAACCCGACCGAC
TCGACTCTCGAGACGTTAACGATTTTAATCGATGAAGACGGGAACGGAAG
AATCGAATTTACCGAGTTAGTCGATTTAATCGATAAATTAGAAACTCAAG
AAAAAGCACTAAAAGAAGATGGATCGATTTACGGAAGAACAGATTCGAGA
GTTCGAAGATGCTTTTTGTATGTTTTGTAAATACGACAAACAAAATAATG
GATATATTTTGAGCACAGACTGGAGAAAAATCGTAAAATCGAATTCGAAG
AATTCAAGGAGATGATTATCATGAAAAAATAACACGTGATTCGTTCAACG
CGTTCGACTTTCTTGGTGAAGGATTTGTAGCAGCCAACGATTTAAAAGAA
GCTTTGTTTTACATCATGGAGAAAGCTTCAGAAGAGGATAAACAAAATAT
CGTCAAACATTTCAAAGCTACGAGAGATGTTAAAGATCGTTGGTTTCAAC
CCGACCGACTCGACTCTCGAGACGTTAACGATTTTAATCGATGAAGACGG
GAACGGAAGAATCGAATTTACCGAGTTAGTCGATTTAATCGATAAATTAG
AAACTCAAGAAAAAGCACTAAAAGAAGATGGATCGATTTACGGAAGAACA
GATTCGAGAGTTCGAAGATGCTTTTTGTATGTTTTGTAAATACGACAAAC
AAAATAATGGATATATTTTGAGCACAGACTGGAGAAAAATCGTAAAATCG
AATTCGAAGAATTCAAGGAGATGATTATCATGAAAAAATAACACGTGATT
CGTTCAACGCGTTCGACTTTCTTGGTGAAGGATTTGTAGCAGCCAACGAT
TTAAAAGAAGCTTTGTTTTACATCATGGAGAAAGCTTCAGAAGAGGATAA
ACAAAATATCGTCAAACATTTCAAAGCTACGAGAGATGTTAAAGATCGTT
GGTTTCAACCCGACCGACTCGACTCTCGAGACGTTAACGATTTTAATCGA
TGAAGACGGGAACGGAAGAATCGAATTTACCGAGTTAGTCGATTTAATCG
ATAAATTAGAAACTCAAGAAAAAGCACTAAAAGAAGATGGATCGATTTAC
GGAAGAACAGATTCGAGAGTTCGAAGATGCTTTTTGTATGTTTTGTAAAT
ACGACAAACAAAATAATGGATATATTTTGAGCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001856XLOC_001856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003356-exon-sc0000026-1575043694:791859..792509TCONS_00003356-exon-sc0000026-1575043694:791859..792509Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1575043694:790831..790992TCONS_00003356-exon-sc0000026-1575043694:790831..790992Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1575043694:777569..777701TCONS_00003356-exon-sc0000026-1575043694:777569..777701Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1575043694:776353..776907TCONS_00003356-exon-sc0000026-1575043694:776353..776907Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1510915933:791859..792509TCONS_00003356-exon-sc0000026-1510915933:791859..792509Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1510915933:790831..790992TCONS_00003356-exon-sc0000026-1510915933:790831..790992Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1510915933:777569..777701TCONS_00003356-exon-sc0000026-1510915933:777569..777701Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1510915933:776353..776907TCONS_00003356-exon-sc0000026-1510915933:776353..776907Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1491911889:791859..792509TCONS_00003356-exon-sc0000026-1491911889:791859..792509Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1491911889:790831..790992TCONS_00003356-exon-sc0000026-1491911889:790831..790992Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1491911889:777569..777701TCONS_00003356-exon-sc0000026-1491911889:777569..777701Clytia hemisphaericaexon
TCONS_00003356-exon-sc0000026-1491911889:776353..776907TCONS_00003356-exon-sc0000026-1491911889:776353..776907Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003356-proteinTCONS_00003356-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:776353..792509 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98788 1.31863 0.979439 0.280759 0.0655393 0 0.197506 0.0586642 0.0520843 0.105866 0.224139 0.123491 0 0.0336893 0.280773 0 3.10873 3.91191 0.100855 0 9.21657 10.4488 4.10419 5.46256 4.37979 10.0504 1.01701 0.542691 0.205806 0.242052
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
BLAST of TCONS_00003356 vs. Swiss-Prot (Human)
Match: CALL3 (Calmodulin-like protein 3 OS=Homo sapiens GN=CALML3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.322e-17
Identity = 44/128 (34.38%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  555 DRFTEEQIREFEDAFCMFCKYDKQNNGYILSTELREMLKIVGFNPTDSTLETLTILIDEDGNGRIEFTELVDLIDKLETQEKALKEARDSFNAFDFLGEGFVAANDLKEALFYIMEKASEEDKQNIVK 938
            D+ TEEQ+ EF++AF +F   DK  +G I + EL  +++ +G NPT++ L  +   ID DGNG ++F E + ++ +        +E R++F  FD  G GFV+A +L+  +  + EK S+E+   +++
Sbjct:    3 DQLTEEQVTEFKEAFSLF---DKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIR 127          
The following BLAST results are available for this feature:
BLAST of TCONS_00003356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALL31.322e-1734.38Calmodulin-like protein 3 OS=Homo sapiens GN=CALML... [more]
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