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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003349 ID=TCONS_00003349|Name=TCONS_00003349|organism=Clytia hemisphaerica|type=transcript|length=2322bpRun BLAST on NCBI transcript from alignment at sc0000026:638006..653154- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003349 ID=TCONS_00003349|Name=TCONS_00003349|organism=Clytia hemisphaerica|type=transcript|length=15149bp|location=Sequence derived from alignment at sc0000026:638006..653154- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003349 vs. Swiss-Prot (Human)
Match: SHPRH (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2) HSP 1 Score: 283.493 bits (724), Expect = 3.591e-80 Identity = 158/391 (40.41%), Postives = 226/391 (57.80%), Query Frame = 3
Query: 30 RMEQRVVEAGRHQLKYFDKLKKEFNLIRSLYLACHGRVQAIDELEMCISRLRFPTHYEEMTEGFCEARNDIVRLGEVSQTRYALLSDRVTASEELKLKNGQMAYLQNLAKVQEDNNGS-NPEPCPICVFPLGSEWAVMTCGHSVCCKCMTTL--QKRSNYKRAAIQCPMCRAQSKLTAISIVTAKPAAVKSTDTDRASSDSNDDILDANISVQGNFSTKIEAVVRRILWIQIEQPKAKTLVFSTWTNVLKVISQALSVNNVEFKSLAGAHPKQFERFLTFFKENEICNVLLLPLHSGAKGLNIIEASHLILTEPALNPSDELQAVGRVHRIGQDKETYVHRFFVRDTVEEKMYHLFKPK-----STQGENTLENELTVDDVVNLIQKTQDE 1178
R + V+ G + F+ KKE+ L+ ++A RV A+DEL M RLR E I+ EV Q R LL+D+ A+ +L+ K GQ+ YL NL K Q+ +G NPEPCPIC LG +WAV+TCGH C +C++ + Q R++I+C +CR + IS V A + D I V+G+ STK+EAVVR ++ IQ+ P AK LVFSTW +VL +IS+AL+ NN+EF ++ K F+ L+ FK + N+LLLPLH+G+ GL IIEA+H++L EP LNP+ ELQA+GRVHRIGQ K T VHRF ++ T+EE+M + K ++ +++ + LTV D+ +L K +E
Sbjct: 1312 RFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPN---PPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKANQEED----------------IPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRV--KTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTNSSAKHSEASVLTVADLADLFTKETEE 1681 The following BLAST results are available for this feature:
BLAST of TCONS_00003349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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