TCONS_00003345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003345
Unique NameTCONS_00003345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003345 ID=TCONS_00003345|Name=TCONS_00003345|organism=Clytia hemisphaerica|type=transcript|length=444bp
TCGTTCGTATCCATCGTTACCCGTTCATCTTTCTATTGACCAATCAAATG
TCTGCTCACGAGGTTATGGTTTACAATAAAATTCAAGAACAatttgatgT
CAATGAGAATGTGACATTCTATCCGGTTTCAAACCATCCAAAATGTGTCG
CCATCATTAATGATATCATCAAACCTAGTATTGATCGTGACTCGATTAAT
ATGGAGCTGGAGGCATTGAAGCAAGGTAAACTGAACGAAGAAATGATCAC
TCAAATCTTGATGCGAAATATACCAATTACTGAtcatgATGCGATGGTTG
TGCAGGACGGTTGTAAATCTTTATCGAACATTGCAAAAGCATCGAAAGAA
GAATTGGTGAATTGTAGTTTGTCTATCAAATCTGCCGAACTAATACAAAC
ATTCTTTAAGTGATTTGCATTCgaaattgttgttgttgttgttg
Run BLAST on NCBI

protein sequence of TCONS_00003345-protein

>TCONS_00003345-protein ID=TCONS_00003345-protein|Name=TCONS_00003345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
VRIHRYPFIFLLTNQMSAHEVMVYNKIQEQFDVNENVTFYPVSNHPKCVA
IINDIIKPSIDRDSINMELEALKQGKLNEEMITQILMRNIPITDHDAMVV
QDGCKSLSNIAKASKEELVNCSLSIKSAELIQTFFK
Run BLAST on NCBI

transcript from alignment at sc0000026:532618..535220-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003345 ID=TCONS_00003345|Name=TCONS_00003345|organism=Clytia hemisphaerica|type=transcript|length=2603bp|location=Sequence derived from alignment at sc0000026:532618..535220- (Clytia hemisphaerica)
TCGTTCGTATCCATCGTTACCCGTTCATCTTTCTATTGACCAATCAAATG
TCTGCTCACGAGGTTATGGTTTACAATAAAATTCAAGAACAGTATGTTGA
AATAATTTGGAGTCAAGTTTTTGAACATTTGCGAGCCTTAAAATTTTTTA
CTCAAAATTATCTTTCCACCGTTTAAAGTTACCGAGTCACTATTCCTTTA
AAAATAATGGATTGAAAATAATAATTTTTGGACTGGAAAGTCAGCTCTAG
TATAGACGGTTGACTTTCTACCCTGTCTGTTCTAACGGTGAATTAAAGTG
GAAAAAAGTGAGCAGTTAAAATCTTTGGCATCTTTGCTTGAAAAAGATTG
AAAGAAGTCATTACATTGACGTCAGCAAAGGGAATTGAATAGGCATAGGC
CATTGAAGTTAAAATAGGGCAATGCATTGACTTTAGACAGCCAACTTTCT
GCCCACTTTAATTCACAATCAGAAAAGACAAGGCGAAAAGAGGACCGTCT
CAAACCAGAGTTCATCTACTTTAGCGAGATTTTTTGAATATTTTTTTTCA
GATTTGATGTCAATGAGAATGTGACATTCTATCCGGTTTCAAACCATCCA
AAATGTGTCGCCATCATTAATGATATCATCAAACCTAGTGTAAGAAAACT
TTCGCTGTTTGAATCGATGTTCTACTATTCGATGAAAATCCAATTCCCCT
TGAAAATTGAATTAGAGAGCGTCAACTGTATCTCATCTGTCTTAAATGCC
AATGTCTATGTAAGCCAGTGAATAACGAGAACGGAGGCTTCGATGTGCTA
TTTGGTAATAATTGGGACGGAACGGTGAAATTAATGCCCACTTTTTGAAA
CGGAAGAGTAAACTTTTTGGTGAAGAAATACGGAAATGTGAAGGCCATTA
GTTGGATTTATCAGATAGACAGGGGGGCACGCAGTTACTACAATACAGTA
TGACACTTACTACCGTGGTGGTATTCAGAAGTTATAAAAACAGTTACTAC
ACAGTGTAGTAACTGCTGTTTGGGGGTGGTGCCAAACACTAAAACTAGCA
CTTTTTGTGTAGTAAGTGCTTATATTTAAATTCTTTTTAAAGAACTTTCA
AAAATTTTCACAAAAAATGAATTTTTTTGTGAAAAAATTCTTTGTTAAAA
AAAATATTTTTGTTATAAATGGACGAAAAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGGTA
CCTGGAAATCTTTTCTGAAAACAGTTACTACCAAGGTGTAGTAACTGCAA
AGGCTGGTGGTCCTGAAAAAAAGTGTTGAAAAAGCACTTACTACAAATCA
TGTCTTGTAGTAACTGGGCACCCCCCCCCCTGAGATAGATCAAATTAAGT
GAAAGCTTTGAAATTCGACTTCTCCATCCTTTTTCTTTCATAGATTGATC
GTGACTCGATTAATATGGAGCTGGAGGCATTGAAGCAAGGTAAACTGAAC
GAAGAAATGATCACTCAAATCTTGATGCGAAATATACCAATTACTGATCA
TGGTTTGTTAACTTTCAATTCGACTCTTTGTGTTCGATATCATTTTGGAC
AATTTGTCAGCTGAAACACAGCTTAAGGGTTAAAAGTGGGGACATACAAG
AACTCAACAATCTGCATTACTCGCACCCTACCTTATCGGCTCTTTTTACA
CTGACCCTAAATCTGATAAAAATCACTAAATTTGCTTTAAAAACTTTCAC
GATTTTTAGGAAATTTTTGATTTCGAATAAAACAAGTGATATTTTTATGG
ACCTACCTGTTTATAAAACGAACAATAAAAACTTAATGAAGGCAATGTAG
AAACAAAAACTGAAAAATTCAAAATTTTGCAAGTTGGTGGCAAAAATTAT
TTTTCGAAAAATTAGCTTTTTCATATTTAGCACATTGTAATTCTACGTCT
TTGTACAAATAATTAGGAAAAACTAAAGAACAGATTTCTCACAAAGTCCA
AGAAACCCTATTTTTTGGACATTTTTTGGGTCCAAATTAGCTCAAAAAAA
TTTTCCATACGAAAATCGGGCTCCGTCACATTTTTGTAATCACCATTGTA
CCAAAAATCACAAAATTCCTATGATTCAATTCCGAGAAAAGTTGGTAACA
GACGAACGGACGAACGGACGGACGAACGGACGGACGAACACTGGTTAATT
TATAGGACCTCCAGGTAGGTCTGTAAAAAAGTCTCTCTAAGGTGCATAGT
GCACCTTAGAGAGACTTTTTCACTAAAATTTTGGTCTCTCTAGGGTCGGT
TTTCAGATGTCCCGTCCGCACATACCCCTTATCCGCCAACCCTAGTACAC
TCCCCCGGGCATCCTCTAGTTTTGAAGCATGTTGTTTTCACTTTCAGATG
CGATGGTTGTGCAGGACGGTTGTAAATCTTTATCGAACATTGCAAAAGCA
TCGAAAGAAGAATTGGTGAATTGTAGTTTGTCTATCAAATCTGCCGAACT
AATACAAACATTCTTTAAGTGATTTGCATTCGAAATTGTTGTTGTTGTTG
TTG

Coding sequence (CDS) from alignment at sc0000026:532618..535220-

>TCONS_00003345 ID=TCONS_00003345|Name=TCONS_00003345|organism=Clytia hemisphaerica|type=CDS|length=1644bp|location=Sequence derived from alignment at sc0000026:532618..535220- (Clytia hemisphaerica)
ATGCGATGGTTGTGCAGGACGGTTGTAAATCTTTATCGAACATTGCAAAA
GCATCGAAAGAAGAATTGGTGAATTGTAGTTTGTCTATCAAATCTGCCGA
ACTAATACAAACATTCTTTAAGTGAATTGATCGTGACTCGATTAATATGG
AGCTGGAGGCATTGAAGCAAGGTAAACTGAACGAAGAAATGATCACTCAA
ATCTTGATGCGAAATATACCAATTACTGATCATGATTTGATGTCAATGAG
AATGTGACATTCTATCCGGTTTCAAACCATCCAAAATGTGTCGCCATCAT
TAATGATATCATCAAACCTAGTGTTCGTATCCATCGTTACCCGTTCATCT
TTCTATTGACCAATCAAATGTCTGCTCACGAGGTTATGGTTTACAATAAA
ATTCAAGAACAATGCGATGGTTGTGCAGGACGGTTGTAAATCTTTATCGA
ACATTGCAAAAGCATCGAAAGAAGAATTGGTGAATTGTAGTTTGTCTATC
AAATCTGCCGAACTAATACAAACATTCTTTAAGTGAATTGATCGTGACTC
GATTAATATGGAGCTGGAGGCATTGAAGCAAGGTAAACTGAACGAAGAAA
TGATCACTCAAATCTTGATGCGAAATATACCAATTACTGATCATGATTTG
ATGTCAATGAGAATGTGACATTCTATCCGGTTTCAAACCATCCAAAATGT
GTCGCCATCATTAATGATATCATCAAACCTAGTGTTCGTATCCATCGTTA
CCCGTTCATCTTTCTATTGACCAATCAAATGTCTGCTCACGAGGTTATGG
TTTACAATAAAATTCAAGAACAATGCGATGGTTGTGCAGGACGGTTGTAA
ATCTTTATCGAACATTGCAAAAGCATCGAAAGAAGAATTGGTGAATTGTA
GTTTGTCTATCAAATCTGCCGAACTAATACAAACATTCTTTAAGTGAATT
GATCGTGACTCGATTAATATGGAGCTGGAGGCATTGAAGCAAGGTAAACT
GAACGAAGAAATGATCACTCAAATCTTGATGCGAAATATACCAATTACTG
ATCATGATTTGATGTCAATGAGAATGTGACATTCTATCCGGTTTCAAACC
ATCCAAAATGTGTCGCCATCATTAATGATATCATCAAACCTAGTGTTCGT
ATCCATCGTTACCCGTTCATCTTTCTATTGACCAATCAAATGTCTGCTCA
CGAGGTTATGGTTTACAATAAAATTCAAGAACAATGCGATGGTTGTGCAG
GACGGTTGTAAATCTTTATCGAACATTGCAAAAGCATCGAAAGAAGAATT
GGTGAATTGTAGTTTGTCTATCAAATCTGCCGAACTAATACAAACATTCT
TTAAGTGAATTGATCGTGACTCGATTAATATGGAGCTGGAGGCATTGAAG
CAAGGTAAACTGAACGAAGAAATGATCACTCAAATCTTGATGCGAAATAT
ACCAATTACTGATCATGATTTGATGTCAATGAGAATGTGACATTCTATCC
GGTTTCAAACCATCCAAAATGTGTCGCCATCATTAATGATATCATCAAAC
CTAGTGTTCGTATCCATCGTTACCCGTTCATCTTTCTATTGACCAATCAA
ATGTCTGCTCACGAGGTTATGGTTTACAATAAAATTCAAGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001850XLOC_001850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003345-exon-sc0000026-1575043694:535130..535220TCONS_00003345-exon-sc0000026-1575043694:535130..535220Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1575043694:534582..534669TCONS_00003345-exon-sc0000026-1575043694:534582..534669Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1575043694:533619..533727TCONS_00003345-exon-sc0000026-1575043694:533619..533727Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1575043694:532618..532773TCONS_00003345-exon-sc0000026-1575043694:532618..532773Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1510915933:535130..535220TCONS_00003345-exon-sc0000026-1510915933:535130..535220Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1510915933:534582..534669TCONS_00003345-exon-sc0000026-1510915933:534582..534669Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1510915933:533619..533727TCONS_00003345-exon-sc0000026-1510915933:533619..533727Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1510915933:532618..532773TCONS_00003345-exon-sc0000026-1510915933:532618..532773Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1491911889:535130..535220TCONS_00003345-exon-sc0000026-1491911889:535130..535220Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1491911889:534582..534669TCONS_00003345-exon-sc0000026-1491911889:534582..534669Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1491911889:533619..533727TCONS_00003345-exon-sc0000026-1491911889:533619..533727Clytia hemisphaericaexon
TCONS_00003345-exon-sc0000026-1491911889:532618..532773TCONS_00003345-exon-sc0000026-1491911889:532618..532773Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003345-proteinTCONS_00003345-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:532618..535220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754846	1.76662	1.19654	0.167233	1.42513	1.76968	1.55276	2.36222	1.65384	2.04855	0.917712	0.603268	0.702834	1.25126	0.0857253	0.459982	0	0.929293	0	0	1.02176	0.640772	0.692393	0.944228	26.2584	18.0826	0.828034	1.7674	0.83782	0.682885
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010994RuvA_2-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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