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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003343 ID=TCONS_00003343|Name=TCONS_00003343|organism=Clytia hemisphaerica|type=transcript|length=2398bpRun BLAST on NCBI protein sequence of TCONS_00003343-protein >TCONS_00003343-protein ID=TCONS_00003343-protein|Name=TCONS_00003343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=605bp MPSEAAKKRKEKKKNQGKAKPAAKTNGTEQTNGNAPNGNAPNGSLDNKFARun BLAST on NCBI transcript from alignment at sc0000026:392725..424489- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003343 ID=TCONS_00003343|Name=TCONS_00003343|organism=Clytia hemisphaerica|type=transcript|length=31765bp|location=Sequence derived from alignment at sc0000026:392725..424489- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:392725..424489- >TCONS_00003343 ID=TCONS_00003343|Name=TCONS_00003343|organism=Clytia hemisphaerica|type=CDS|length=18180bp|location=Sequence derived from alignment at sc0000026:392725..424489- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003343 vs. Swiss-Prot (Human)
Match: ABCF2 (ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2) HSP 1 Score: 735.332 bits (1897), Expect = 0.000e+0 Identity = 364/547 (66.54%), Postives = 443/547 (80.99%), Query Frame = 1
Query: 367 FAKIKLSNLSVSGVLASHPESRDLHLSTISLRYHGAELLTDASCELNSGRRYGLLGPNGCGKSTLMEALASRELPIPRHFDIFHLQNEVEPSDKTALECVMEVXXXXXXXXXXXXXXXXXXXXXMAHD-----RLMDIYERLDELEAGTAEATACRLLHGLGFTPIMQATKTRDFSGGTRMRVSLARALFVKPSILLLDEPTNHLDLEACVWLEEELKTYKRILVLVSHSQDFLNGVCSNIITMAQKKLITYTGNFDQYCITKSELEENQMKAYKREQDEIAHMKDYIARFGHGSAKLARQAQSKEKTLAKMVEGGLTQKVETERSINFYFPDCGKLPPPVLAVNHISFGYREDRPLIYKDLDFGMDLDTRIALVGPNGAGKSTLLKLLCGELTPTDGIVRTHQHLKFGRFHQHLHEILEMDCSSLDWMLKTFPKEKDVEKMRKFLGRYGLTGKQQTCPIGQLSDGQRSRVIFAWLSFQNPHMLLLDEPTNHLDIETIDALAEAINEFDGGMVLVSHDFRLIMQVAKEIWVCEKGTVKKWKGDIFSY 1992
F K + +V+GVLASHP S D+H+ +SL +HG ELL+D ELNSGRRYGL+G NG GKS L+ A+ RE+PIP H DI+HL E+ PSDKT L CVMEVD ER +LE+EA+ +AH+ +LM++YERL+EL+A AE A R+LHGLGFTP MQ K +DFSGG RMRV+LARALF++P +LLLDEPTNHLDL+ACVWLEEELKT+KRILVLVSHSQDFLNGVC+NII M KKL YTGN+DQY T+ ELEENQMK + EQD+IAHMK+YIARFGHGSAKLARQAQSKEKTL KM+ GLT++V ++++++FYFP CGK+PPPV+ V ++SF Y +D P IY +L+FG+DLDTR+ALVGPNGAGKSTLLKLL GEL PTDG++R H H+K GR+HQHL E L++D S L++M+K +P+ K+ E+MRK +GRYGLTGKQQ PI LSDGQ+ RV AWL++QNPHML LDEPTNHLDIETIDALA+AINEF+GGM+LVSHDFRLI QVA+EIWVCEK T+ KW GDI +Y
Sbjct: 63 FEMKKAAARAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEAER--------LAHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAY 601 The following BLAST results are available for this feature:
BLAST of TCONS_00003343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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