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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003342 ID=TCONS_00003342|Name=TCONS_00003342|organism=Clytia hemisphaerica|type=transcript|length=2338bpRun BLAST on NCBI protein sequence of TCONS_00003342-protein >TCONS_00003342-protein ID=TCONS_00003342-protein|Name=TCONS_00003342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=752bp MKMLELVLLVTSLMLLVQANQLGLNQCYHVXKSDGCRRACRKLTVPNNRERun BLAST on NCBI transcript from alignment at sc0000026:362158..381065- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003342 ID=TCONS_00003342|Name=TCONS_00003342|organism=Clytia hemisphaerica|type=transcript|length=18908bp|location=Sequence derived from alignment at sc0000026:362158..381065- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:362158..381065- >TCONS_00003342 ID=TCONS_00003342|Name=TCONS_00003342|organism=Clytia hemisphaerica|type=CDS|length=38403bp|location=Sequence derived from alignment at sc0000026:362158..381065- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003342 vs. Swiss-Prot (Human)
Match: RECK (Reversion-inducing cysteine-rich protein with Kazal motifs OS=Homo sapiens GN=RECK PE=1 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 1.791e-76 Identity = 208/730 (28.49%), Postives = 323/730 (44.25%), Query Frame = 1
Query: 85 CYHVXKSDGCRRACRKLTVPNNRESKEKFTQQYVKNQLMEIAQQCTQPEAEFWKCLDKSALMKDFRKKKRKYHGTCCKEAIHTSCEVEC---LTTKKISKLLKNERCNANREPKFTSCIKKVHAARKCCS--GSTKECKHSCMQYFKNVRSNNVLQLKQIFQKKCGRRSKQFKCALTNSNFDRAIQNVNN---CCNHSHNKRCHNSCNRVLGNLDKDFKTAFKQLTDDCGELHV-NSPLYRCLLDANTQTQRIEDVPNRGRTTIRKPA--YQSFKQQCCDRAVSPDCRKWCQETMADPKLMLSLWGTMYLSCIQSPKEVALSNCMTDVFEPCEIGVKEPMTFCTNLNEHPMSLFRRGDQSGDLTARKLHKFWSDGVVKVFGYKLVFKDISTCQPEMFKAMACLLATKPCDHRHSQIQVCRHDCEILLTECLNHDISDYAPNTVQDICANILPNNNQSNCIPLRKYAVRQTPSTALLRRVKPREDVTLPCRNDPCGEDEVCLINQE-CLKEDENSIYPCPKYKCVKGCPVNVNSKLIIPLGEMAKLRD--GESDCYQVCECQYANEHNEKSTNTVFKNCKKFLC-NQKRSCTRGKMTYRDGDTFHEQCNTCTCIDGTFECTKKNCGLEFVEESTATGRHRRHHGSSFFVQNSSPCNCHDVYKPVCALNVMTYPNACLAKCSNISDINLSVGDCRSIHPCDLNSCDPGKVCVPFRRVCLAPWT--SCQQYEC 2223
C H + CR C ++ + ES+ +K+ L C + E W C++ S+L F+K CC+ AI C C + ISK+ + E NA SCI + CCS G C+ C F+ S Q+K + + C S Q + N ++N + CC+ + + C N+C R+L + + + L + C + PL++C L+++ + G T P+ K CC +A + CR+ C + + W C +P EV++ C+ DV EPC++G + +T+CTN N P LFR + D A K W G +K+ + DI CQPEM+KA+AC L KPC + +C+ DC +L +C + + +T + IC + P ++ NCIPL Y T + E+VT PC +PC +E+C +N++ C D PC Y CV+GC + S I+ G + ++ GE CY++C C + + +NC + C + ++SC G G +F CN C+C G C+ + C + E ++ R G PCNC D + PVC N TYP+AC+A+C + D G C S PC+ N C + C+P +VCL + C QYEC
Sbjct: 38 CNHSKDNQMCRDVCEQI-FSSKSESR-------LKHLLQRAPDYCPETMVEIWNCMN-SSLPGVFKKSDGWVGLGCCELAIALECRQACKQASSKNDISKVCRKEYENA-----LFSCISRNEMGSVCCSYAGHHTNCREYCQAIFRTDSSPGPSQIKAV-ENYCASISPQLIHCVNNYTQSYPMRNPTDSLYCCDRAEDHACQNACKRILMSKKTEMEIV-DGLIEGCKTQPLPQDPLWQCFLESSQSV-------HPGVTVHPPPSTGLDGAKLHCCSKANTSTCRELCTKLYSMSWGNTQSWQEFDRFCEYNPVEVSMLTCLADVREPCQLGCRN-LTYCTNFNNRPTELFRSCNAQSDQGAMNDMKLWEKGSIKMPFINIPVLDIKKCQPEMWKAIACSLQIKPCHSKSRGSIICKSDCVEILKKCGDQN-KFPEDHTAESICELLSPTDDLKNCIPLDTYLRPSTLGNIV-------EEVTHPCNPNPCPANELCEVNRKGCPSGD-----PCLPYFCVQGCKLGEASDFIVRQGTLIQVPSSAGEVGCYKICSC---------GQSGLLENCMEMHCIDLQKSCIVGGKRKSHGTSFSIDCNVCSCFAGNLVCSTRLC----LSEHSSEDDRRTFTG--------LPCNCADQFVPVCGQNGRTYPSACIARCVGLQDHQFEFGSCMSKDPCNPNPCQKNQRCIPKPQVCLTTFDKFGCSQYEC 709 The following BLAST results are available for this feature:
BLAST of TCONS_00003342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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