TCONS_00003332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003332
Unique NameTCONS_00003332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003332 ID=TCONS_00003332|Name=TCONS_00003332|organism=Clytia hemisphaerica|type=transcript|length=4361bp
AAGGATTCCATAAAGCTTACCCGTGGAAAGTGAATGAGATAGAGTAGGAA
AGGCGAGGAGTGGTTCAAAGAGCAACCTTACTTTGAATTAATACGATCGT
TGTGGAAAGAGCTGGGACTGGTTAGTTGCTTGCACCTACGGTGATCGAAG
CAGGCTTTTGGCCAGCCAGCATACAAAAATGCGCTTTTCCACTGGCGAAC
GACAACTTTGGTTGTTGTTCATAGCTGTATTCAGCACGCTCGCAAACGCT
CAAGAAGCGGGGAAACCAGGAGAATGTCCAGTGATTGATACAGATTCGAA
AGCGGAATGTCCACCGTTGACTGCAGGTTTGAACAGTTGCTTATTGGACA
CTGATTGTCCCGGATCACAAAAATGTTGTACTGATGGTTGTACTTTGGTT
TGTACCACTGTTGTCGTTCCAACAAGACCTACACCCATCAAAGGGGAACC
AGGAGATCCAGGTGAACCAGGAGAAGATGGACCTAATGGACAAAAAGGCC
CAGATGGAAGGCGAGGTTTTGGTGGAGTCAAAGGATTGAAAGGAACCAGT
GGAAAACAAGGACAAAAAGGAAAACGCGGCAGACCTGGACCCCCAGGACC
ACCAGCTGGCACTGGCACCGGCCCAGTTGGGCCACTCGGAGAGAAAGGCG
GCAATGGGGACGAAAAAGGTCCTGGACCAAATGCTGGAGGTGAATTTGAT
AACCTTAATGAAAATGGTTTTGTCACACCAAAAGAAGGGCCACCAGGACC
ATTAGGGCCAAAAGGACGCGAAGGTCCCCGAGGACCATATGGAGAACGCG
GAGAGCCAGGACTTCCTGGAGAAGCTGGCGGTGCTGGCGAAAAAGGAGAA
CTTGGTCCAACCGGATCTGCTGGAGAAGCTGGTCGCGATGGAATCAATGG
TGAACGTGGAGACCCAGGAAGAATCGGCCAAACTGGACCAAGAGGAAGTC
AAGGAGACCGAGGACCCCAAGGCGTCCGTGGAGCTGCCGGTTACAAAGGA
TTGAAGGGAGATCGCGGAGAGACTGGTGAAAAAGGAGGCACTGGAATTGA
AGGAGATAAAGGAATAGCTGGAGACAATGGTCTGGATGGTGATAGTGGAC
CACGAGGACCACAAGGTTTACAAGGTTCCCCAGGACCTGCTGGAACATCA
GGACCAACTGGACCTAAGGGACCACTTGGATCGACTGGACCTCCAGGACC
ACCAGGACCTGCAGGATTACCAGGAACACCAGGAAAAGCAGGTGTCGATG
GGGCCAAAGGAGAAGATGGAGCTTTCGGATCAAGAGGTGAACGTGGAGAA
CAAGGAATCCGTGGAGTGACTGGAGATGCTGGACCAAAGGGAGATGTTGG
TCAACCTGGTGCCCGTGGCCGAGATGGTAGACAAGGGAAGAAGGGAAGCC
AAGGTATGGCTGGACCTCAAGGACAACGAGGACCCCCAGGTACTCGAGGA
CTTCAAGGTTTAAGAGGACCCGACGGAAGTATTGGAGGAACTGGTACCCG
AGGAGAACCAGGAGAACAAGGTGGTCTTGGTCTAGCAGGTCTCAAAGGAA
CTCGTGGAGATCCAGGACCACCAGGAAACCCAGGACCAGCTGGAGGACCA
GGGAAACGAGGAAAAGCTGGTCGGGATGGGCCTAATGGGCCCGCAGGACC
TGATGGCGAACGTGGACAACAAGGTTTACCAGGAAGCCCTGGAGACCCAG
GAACCCCAGGACCAAAAGGGCAACAAGGAGACCGTGGAGAGATCGGTAAA
CGAGGATTGAAAGGATCATCTGGAGGACCAGGAGAGCCAGGAGAAGTTGG
ACCACAGGGAGATCGTGGACCATCAGGGCCACCAGGAAAATCAGGAAGAC
CAGGAAAATCTGGACAACGTGGTGTCCCAGGAAAAGACGGAAGGCCAGGA
CTGATGGGACAACAAGGACGACGCGGTCTTGTCGGATCACAAGGTCTTCA
AGGACCAAAAGGAGCCAGAGGACCATCTGGAGGAATTGGTGAACCAGGAA
GCGTTGGGCTTAAAGGTAATACTGGAGACAAAGGACAAAAAGGAGCCCAA
GGACAAGCTGGACCTCAAGGTATCGATGGCGCTGCTGGAGAATTGGGTGC
TCCTGGAGCCCCTGGAAATGCAGGAAGAACAGGACCACCGGGACCCGTCG
GAGAAGCCGGTGCCCCAGGCCGTGATGGAGAACCAGGAAAAGATGGACTT
CGAGGAGACAATGGAAAAACAGGAGAACAAGGTCCAAGAGGTCCACCTGG
AGCTAACGGACCAACTGGCCTGAGAGGATCGCCTGGATTGAATGGAGAAA
GTGGAGAACCAGGAGCAGAAGGAATCCCAGGAGAAAAAGGACCTTCTGGA
CCAAACGGAGTCACTGGATCTCCAGGAGCACCAGGTGCCCAAGGATCTCC
AGGAATGAGAGGACCCGATGGATCAAAAGGAGAACATGGTTCCAGAGGGC
CAAAAGGACAACCAggagaaaatggcaaaaatggaCAAAGAGGAGCTGAT
GGATTACCAGGACCAGCTGGACCTTCAGGAGAAACTGGACCTAAGGGAGA
AACCGGACGACCAGGAGCTAACGGACTTCAAGGAAAACGTGGAAAACCAG
GATCACAAGGAAACCCAGGATCATCTGGATTACCAGGAGAGCCAGGATCT
ATTGGATTAAGAGGAGGAGATGGCTCCAAGGGAGAGCGAGGACCTCGTGG
AGATAAGGGTGTTTCTGGCAAATCTGGACCACCTGGACCTGACGGAGATA
TTGGTCAAATTGGGCAGATAGGATCGGATGGTAACAAAGGATCGAAAGGC
CCAAGAGGATCAGCTGGTAACCAAGGAGCACCAGGTATCCCAGGAAACCG
TGGACGACGTGGGCCAACTGGAAACCGAGGACGTTCTGGACCACCAGGAC
CCTCAGGGCGTGATGGATCAAAAGGATCTCCAGGAGAAGCTGGATTACCA
GGACGACCAGGAGACAATGGTGCACCAGGAATGGCAGGAAAGGACGGAAG
CAATGGAGATCCAGGAGATGATGGTATCCCTGGTATTCAAGGAACAATGG
GTGCTGCTGGACCAATAGGCGCCCGTGGATCCCCAGGACGTGTTGGTATG
CCAGGATTTCCAGGATCTCAAGGAAAATCCGGTGAAAAGGGAGAACCAGG
AGTTGCTGGAACCGCAGGAAAGGCTGGAAAGAAAGGACCTCCAGGACCAC
AAGGTGTCGCCGGTGCTACCGGATTCCCAGGAAAACCAGGAAAAGACGGA
GCTGGTGGAAAAGATGGAAAAGCAGGAGGCCCTGGTGAAGTTGGAACAAA
AGGTGATGCAGGAACACCCGGATATCCCGGATCACCGGGAACGGCAGGTA
TGCCCGGAATCGCTGGAGCTGCTGGTACTAAAGGCAAGAGCGGATCAAAA
GGAATGGCTGGACGAGATggagctaaaggaagcaaaggTCTCCAAGGACG
AGATGGAACCATTGGCAACAGAGGTGCCAAGGGAAACAAAGGAAATAACG
GAGATACAGGAGAAAAGGGAGACAAAGGATGGAGAGGTATGACTGGCCCA
ACTGGTCTTCCAGGACCCATTGGTATGCAAGGAGAAGTCGGTGTCGATGG
ACCAAAAGGAGCCTCCGGACCCGCCGGAGATGATGGACCAAGAGGACGCG
CTGGACGCGAAGGACCACCCGGAGGACTCGGAGATGCTGGACCAGAAGGA
ATTAAAGGATCCAATGGACCACGAGGACGAGGCGGTGAAGACGGTATTCC
AGGACCTTCTGGACCACCCGGACCTCCAGGACCCCCAGGATTGCCAGGAG
GTTTTGGTGCCGGTGGTTTAACTTTGCCTCCGTTTGGCGGGAACACGGAG
AAAGGACCAGCATACCAACAATACCAAGGCTACAAATACTACAAATCTGA
AGAAGGCAAAGACTTCAAGACTGAAGCCAAAGAAACACAAGGAACCGTTT
TCTCATACGTTCTCAAACTTGATGAGACCATCCAAGGAATTGAGAAACCC
GATGGTACTAAAGCATTCCCTGCCAAGACTTGCCAAGATTTACAAATGTG
CCACCCAGATGTCGAAACAGACGAATACTGGTTGGATCCAAACGGAGGTT
CATCATGGGACAAATTCCCAGCACGTTGTGACTTTGATAACAAGAAACAC
GAGACATGCGTGCCACCGCACAAAGCTACTTTCGACAAGAAAGAATGGGT
CACCAGTGGTACTGATAAATGGACCTGGTTCTTACGCGATCTTGCCATCT
CTGATGACttCGACTTCCCAGCCAACAATGTTCAATTGAGATACATGCGC
TTGAACAGCATGACTGTCCGACAAAACATCACCTATCACTGCAAGAACTC
ACACGCACATA
Run BLAST on NCBI

transcript from alignment at sc0000026:304903..316664-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003332 ID=TCONS_00003332|Name=TCONS_00003332|organism=Clytia hemisphaerica|type=transcript|length=11762bp|location=Sequence derived from alignment at sc0000026:304903..316664- (Clytia hemisphaerica)
AAGGATTCCATAAAGCTTACCCGTGGAAAGTGAATGAGATAGAGTAGGAA AGGCGAGGAGTGGTTCAAAGAGCAACCTTACTTTGAATTAATACGATCGT TGTGGAAAGAGCTGGGACTGGTTAGTTGCTTGCACCTACGGTGATCGAAG CAGGCTTTTGGCCAGCCAGCATACAAAAATGCGCTTTTCCACTGGCGAAC GACAACTTTGGTTGTTGTTCATAGCTGTATTCAGCACGCTCGCAAACGCT CAAGAAGGTAAGTTAGTTTCAAAGCTATATGATTAATAATTGGAGTAAAA GACTAGACCTTTAGTCTAAAGGTTCACGACTAGAAATGTAATACCTAAAG GGAATAAATTTTCTAAGCAAAAAGTCAAGGTCTTATATATCTTCTTATAT TTGTCTTAATGATATTAAGTAAGGGGAAGTAAAGGAAGAAATCTCAAGGG TTGGAACCAAAATATAAAATAATGATTACATACTAAGGAAGAATTTTTCT ATCAGAAACCCGAAGAAAGACCATAGCCAAAAAGATTCTATCAGATATTT CTGAGAATCTAGAGAAAATCTTTGCGGTTTTGAGCGTCTTAATTCGAGAT TTATGATTTCAAAACTGAAAATAAGACACAACAAATTTATTTTTAGAATT ACTATGTAAAAGAGACCATTCTTATACTTTACATCTCCTTGACAACAATG TATTATGAAATGACACGATTTTTGACTGACATACAGTAAATCAAGAGCCG AAATGATTTTAAATCGTGATATTTTTTTATTATGAGCTGCTAAAAGAGAC TAATAAAAAAAGGCCATAAATCACGAAGTTAACCGAAGGGTAATTTTTAA TGCAAAATCTTAAAATCTGATGCCCAGTTAAGCTAAAACTCGAACTTGTT TGAAACTTTAAAACAAATAAACTAAGGTTTTTCTGAAGTTAAAGGTCTCG AAATGAAGGGTAGAAATTTTTTCTTGTACACGTTTTTTTATAAGAACATC CAAAATTTTTGAAGCCTTTGGATGTTTTGTGTTTAAAGCCTAAAATGTTC TTAACATGTTCTTATTTTGACCATTTTGTGAGAATTTTGGTCCATTTTCC CGAGATATTGGGTATTTTATATAGTCCGCAAAGCCTTAAATGTTCTTAAC ATGTTCTTAAAATTTTGGCCGTAGAAGTCTTGTGTTCTTATAAAAAAACG TGCAATGCTCATGTTGCTGTTGCATCATGGCCTAGCGAATTTATTTCTAA ACGGACGGCAGATAATTTCAAAAGGAGGAAATCAGCACACTTGACATTTT CTTTCCTTGAAAAGGTCATATTACTCGTTAAGTAACAGAGGGAAAAATTT TTTAAGCAAAACACGCCTGTCTAGAAATTTTTTTCTTACGAAGTATCGGA AACACGTAGCTTCAATTTATGCATCAATGTGTTAAACAAGTTTTATGTTA GATCATTATGAGCTAGTGTCTGGAATAAATACTGGTCGAAGCAAAGATTT TTGTTTCAGACAGGTTTTTTTTTGTATAACAAATTAGCCCAAACTTTTAT ACTCTCATTGAATACTTTGCCAAAAATGCGCCATTTTTCAGCCTGTGCTG GAAGCACTGCAATAAAATTTGTGAAGAATAACAGATAAAAAAACAATAAA ATTCAGAAAATTCTGATTAGAATTGGGTGTAAATTCAAATTTCGAATCTC ATTTACGAGCCAAAAGAAAAGAAGTTTAGGCATTTTTCTCATTTGAAAGA AATTCGAACACCAAATATATCTTATGTGTCAAATCATTTGAAAGATAGGG AAATAAACAAAATAGAGAAGACAATAAACGTTTTTTGTAATAACATCCAA AAGATTGGGTTCTTATCTTTGTGAGTTTTAAGCCTAAAAATGTTCTTATT TTCACCTTGTTGAGGTACTTTGTCCATTTTCCGAAGAAATCGGGTGTTTT AGAGTCTGCAAAGCCTTGAAATGTTCTTAGCTTGTTCTTAATAATTTGGC CATCAAAGCCTTAGATTCTTATATAATTTGTTCTTATAAAAAACGTGTAA ATCATTAACACTGTTTGGTGACTTCAACCTTGTGTAAACAAAACAGTTGA TGGAGAAAGAAAGATATTCAAGTGTTTGAAAAAGGGGTTCACTATGGCTG TGTTTACATTATAAACATTGGGTCATTCCATTCCACTCTGTTTACATTGT CAACATTCTTACTATACCCCAATACACGTTTTTTTTATAAGAACATACTA TATAAGAACATAAGGCTTCGAGGCCCAAAAATTTAAGAACATTCTAAGAA CATTCTAAGGCTTTGGGGACTTAAAAACATGCATTTTCTTAAGAAATTAC ACCAAATGCTCAAAAAATGCTGAAAATAAGAACATTTTAAGAACATTTTT AGGCTTCAAATCAAAAAAACTAAGAACATCCGAAGGCTTTGAGAATTTTT GACGTTCTTATAAAAAAAAAACGTGTACTGTCAGTTGATAGAATTATGAA AGGAAAGGCGCCTCAAACCTTTCTTTATCCCCTCAAATTAGACAATAATT TTAGCACCTTAGGAAGCTTATGGCCTTTCTGACATTCGGTATACTTTTAA ATAATGATGTCAGGAAACATGACCGATAGTTTGTGGCATTTTGATTTCTA CTGGACTCATACACGTTTTATATATAAGAATGAAGTATATAAGAACATAA GACCAAATTGCAGCCTACAGAAAATTTTGAGAAACTTAAAAACTTTAGAA TAGCATTAAAAGAATTCGAAATTTTTCGACACTTATAAAAAAACGTGTAA ACATGTTTTTCAAGTTTAAAGGGGTTAAAACGAATGACTAATTTTCTCCA TTCTGATTATATTTTACAGCGGGGAAACCAGGAGAATGTCCAGTGATTGA TACAGATTCGAAAGCGGAATGTCCACCGTTGACTGCAGGTTTGAACAGTT GCTTATTGGACACTGATTGTCCCGGATCACAAAAATGTTGTACTGATGGT TGTACTTTGGTTTGTACCACTGTTGTCGTTCCAACAAGACCTACACCCAT CAAAGGGGAACCAGGAGATCCAGGTGAACCAGGAGAAGATGTAAGAATGA TTTATTTTTTATCAGGCCTTGGTAATATAAAAATCTTAAGTATGCAAGGA TCTTGCTTATTTTAGGTTTTATCCACACTGTAAAAATACAAATTTCTCTT TTGAAAAATATACTGGACTATCAAAAGCTTGACAAATACTTAAATAGGGT TAATTTCGCGGATGGCACTTTTGGGTGGCAATATTTTAACGATTTTGTAC ATTATAAGCAACTCTTTGATGCTGTAAACATTCAAACAGTGTTTCTTTGA CATTTTTCTAGTTTTGTTTAGAAATATTTCGCGGATAAGGTCTTTTCAAA TTTCCATTGGGATTTAATTTCGTGGATAACACCCAAATCCGCGAAATTTA ACCCCCGCCAAAATTAATCCAATTAAAGTAGATCATTAAATTAATTGGCA TACAAATTTTTAGGGACCTAATGGACAAAAAGGCCCAGATGGAAGGCGAG GTTTTGGTGGAGTCAAAGGATTGAAAGGAACCAGTGGAAAACAAGGACAA AAAGGAAAACGCGGCAGACCTGGACCCCCAGGACCACCAGCTGGCACTGG CACCGGCCCAGTTGGGCCAGTAAGTTTGAGAATTCAGAATTTCACACTAG AGACCAGACTCGATAACCTAACATTAACTTAAACCAAAAAATCGCTGAAC ATTTTCCAAAATATTTTGATACATTTCCATCATTACGTCGATGGAATTTT AAACGCTTACTGATCGACAATATATTGCTGTAGTCTAGGCAGGCTTCGAC CAGTTTCACTATAATAAGTTCAATCCTGTACCTTAAACATTACTGTTGGG AATTTAGACTCCAGAGTTTATGAAATACAACATCTCCACATCAGAACTAA TTTTGAGACTTGTTTTATAGCTCGGAGAGAAAGGCGGCAATGGGGACGAA AAAGGTCCTGGACCAAATGCTGGAGGTGAATTTGATAACCTTAATGAAAA TGGTTTTGTCACACCAAAAGAAGGGCCACCAGGACCATTAGGGCCAAAAG GACGCGAAGGTCCCCGAGGACCATATGGAGAACGCGGAGAGCCAGGACTT CCTGGAGAAGCTGGCGGTGCTGGCGAAAAAGGAGAACTTGGTCCAACCGG ATCTGCTGGAGAAGCTGGTCGCGATGGAATCAATGTAAGTAACGTATGGG ACAAAAAAATTGCTTTGGAGCTTCCTTTCTAAAGGAGGGAGGATGTTGAA ATTCTTCATTTAGATGACAAAAACCGATTTAAAATTTGAAAACATAACTA TTGTCAATTTTTATTGAAGAAAATGACTGAGAAGGAATGATTTCTATTAA AACTCAAAGAACTTCTTTTTGATATACTTCAAAATTGGAAACGCAAATAT AAGATGAAGGAGTGAATGAATGAATAAATAACCTTTTTTATTAGGGTGAA CGTGGAGACCCAGGAAGAATCGGCCAAACTGGACCAAGAGGAAGTCAAGG AGACCGAGGACCCCAAGGCGTCCGTGGAGCTGCCGGTTACAAAGGATTGA AGGGAGATCGCGGAGAGACTGGTGAAAAAGGAGGCACTGGAATTGAAGGA GATAAAGGAATAGCTGGAGACAATGGTCTGGATGGTGATAGTGGACCACG AGGACCACAAGGTTTACAAGGTTCCCCAGGACCTGCTGGAACATCAGGAC CAACTGGACCTAAGGGACCACTTGGATCGACTGGACCTCCAGGACCACCA GTAAGTATTAGTTACTTAAATTCCCTTCACTTTTGACGTCAAAAAGAAAC ATTCTCGAATTGTATTTCATTATTTACAATATTTCCGCAGTTAAATCCTA AAAACGAGAAAATTAGATTGAAATAAATTTTGGCCAGATAAAAATGTAAC ACCAATGGCAAGATATCCTGAATATTAACTATTCCATAACTATTTTCAGG GACCTGCAGGATTACCAGGAACACCAGGAAAAGCAGGTGTCGATGGGGCC AAAGGAGAAGATGGAGCTTTCGGATCAAGAGGTGAACGTGGAGAACAAGG AATCCGTGGAGTGACTGGAGATGCTGGACCAAAGGGAGATGTTGGTCAAC CTGGTGCCCGTGGCCGAGATGGTAGACAAGGGAAGAAGGGAAGCCAAGGT ATGGCTGGNATAGCTGGAGACAATGGTCTGGATGGTGATAGTGGACCACG AGGACCACAAGGTTTACAAGGTTCCCCAGGACCTGCTGGAACATCAGGAC CAACTGGACCTAAGGGACCACTTGGATCGACTGGACCTCCAGGACCACCA GTAAGTATTAGTTACTTAAATTCCCTTCACTTTTGACGTCAAAAAGAAAC ATTCTCGAATTGTATTTCATTATTTACAATATTTCCGCAGTTAAATCCTA AAAACGAGAAAATTAGATTGAAATAAATTTTGGCTAGATAAAAATGTAAC ACCAATGGCAAGATATCCTGAATATTAACTATTCCATAACTATTTTCAGG GACCTGCAGGATTACCAGGAACGCCAGGAGAAGCAGGTGTCGATGGGGCC AAAGGAGAAGATGGAGCTTTCGGATCAAGAGGTGAACGTGGAGAACAAGG AATCCGTGGAGTGACTGGAGATGCTGGACCAAAGGGAGATGTTGGTCAAC CTGGTGCCCGTGGCCGAGATGGTAGACAAGGGAAGAAGGGAAGCCAAGGT ATGGCTGGACCTCAAGGACAACGAGGACCCCCAGGTACTCGAGGACTTCA AGGTTTAAGAGGACCCGACGGAAGTATTGGAGGAACTGGTACCCGAGGAG AACCAGGAGAACAAGGTGGTCTTGGTCTAGCAGGTCTCAAAGGAACTCGT GGAGATCCAGGACCACCAGGAAACCCAGGACCAGCTGGAGGACCAGGGAA ACGAGGAAAAGCTGGTCGGGATGGGCCTAATGGGCCCGCAGGACCTGATG GCGAACGTGGACAACAAGGTTTACCAGGAAGCCCTGGAGACCCAGGAACC CCAGGACCAAAAGGGCAACAAGGAGACCGTGGAGAGATCGGTAAACGAGG ATTGAAAGGATCATCTGGAGGACCAGGAGAGCCAGGAGAAGTTGGACCAC AGGGAGATCGTGGACCATCAGGGCCACCAGGAAAATCAGGAAGACCAGGA AAATCTGGACAACGTGGTGTCCCAGGAAAAGACGGAAGGCCAGGACTGAT GGGACAACAAGGACGACGCGGTCTTGTCGGATCACAAGGTCTTCAAGGAC CAAAAGGAGCCAGAGGACCATCTGGAGGAATTGGTGAACCAGGAAGCGTT GGGCTTAAAGGTAATACTGGAGACAAAGGACAAAAAGGAGCCCAAGGACA AGCTGGACCTCAAGGTATCGATGGCGCTGCTGGAGAATTGGGTGCTCCTG GAGCCCCTGGAAATGCAGGAAGAACAGGACCACCGGGACCCGTCGGAGAA GCCGGTGCCCCAGGCCGTGATGGAGAACCAGGAAAAGATGGACTTCGAGG AGACAATGGAAAAACAGGAGAACAAGGTCCAAGAGGTCCACCTGGAGCTA ACGGACCAACTGGCCTGAGAGTAAGTCGAACTTTTACTTGTTACCAAACC CAAATAATCTATAAGTTATCTGAAAAATGAGCTTTTTCTCGAAAAGTTAC TGAGAGTCCTTGGCTAGACCTTAACGAAGCCTTATTTGCCAAAATAAAAA AATCATAGGTCATATAAATCATTTCAACAATTTCTTTCCTTCTAGGGATC GCCTGGATTGAATGGAGAAAGTGGAGAACCAGGAGCAGAAGGAATCCCAG GAGAAAAAGGACCTTCTGGACCAAACGGAGTCACTGGATCTCCAGGAGCA CCAGGTGCCCAAGGATCTCCAGGAATGAGAGGACCCGATGGATCAAAAGG AGAACATGTAAGCAGTTTTCAAATATATAAATCTTAATCTCAAGGAAAAA AGTGAAAACCAGGGAAATTTATCTTTCAATCATCTTTCAATTGAGTCCTC TAGAGCAATCGAATTCACAGAGGCTAGTTATCACCACCTATACTAACAAC TGTACGTAACTTTGCGTAAAATCTGCCAGCAAGGAAAAAACATTCGATTT TGAAAATTCAATTTTTCAGACAAATCGAATGTCTCGTCCATAATGGCGTA AACTTTGAAACTTTCCAACCTAGACGAAACTCAATTCATCTTTCTTTCCC ATTTTCAGGGTTCCAGAGGGCCAAAAGGACAACCAGGAGAAAATGGCAAA AATGGACAAAGAGGAGCTGATGGATTACCAGGACCAGCTGGACCTTCAGG AGAAACTGGACCTAAGGGAGAAACCGGACGACCAGGAGCTAACGGACTTC AAGGAAAACGTGGAAAACCAGGATCACAAGGAAACCCAGGATCATCTGGA TTACCAGGAGAGCCAGGATCTATTGGATTAAGAGGAGGAGATGGCTCCAA GGGAGAGCGAGGACCTCGTGGAGATAAGGGTGTTTCTGGCAAATCTGGAC CACCTGGACCTGACGGAGATATTGGTCAAATTGGGCAGATAGGATCGGAT GGTAACAAAGGATCGAAAGGCCCAAGAGGATCAGCTGTAAGTATAAAACC AATATTTATGAAGTGCTATATCCACAGTACAACTACCATCTGCATCTTTG CCTGTCTTGCTGNATGAAGTGCTATATCCATAGTACAACTACCATCTGTA TCTTTGCCTGTCTTGCTGTTTTTGTATCTTCATCCGTACATTTCGATAGC CAACCGTAGTGCAGTGGTAGAGCATCCCACTACGGTTCGCAAGGTTGTGG GTTCAACCCCCAGCCGGGTCATACCAAAGATTTTCAAAATGGTACCTGAT GCCTATCTGCTTGATGCTCAACAATTAAAAGAAGGATCAAGGGTAAAGTT GAGCAATCCAGGGAGAAAGAGTGGCGCCCTCCCTTACCTTCGGGTAGACA GCTATCGAAAGAGGAGCCTCCGGGTCGCCTCCGACTGCGGTCGCAAACTC ACTTACTTTTACTTGATAACTCTAAAAGGGAAAAATCTTACCAAGGAATG TTATGCAATAACTGATGTGATATTTTCAGCACCTTCNCCTATCTGCTTGA TGCTCAGCAATTAAAAGATCAAGGCTAAAGTTGAGCAATCCAGGGAGAAA GAGTGACGCCCTCCCCTACCTTCGGGCAGAGGTCTAAAGAGGAGCCTTCG GGTCGCCTCCGACTGCGGTCGCAAACTTACTTACTCTTACTTGATAACTC TAAAAACCTTACCAAAGAATGTTATGCAATAACTGATGTGATACCTTTTA AAACAATCTTAAATTACATTTTAGGGTAACCAAGGAGCACCAGGTATCCC AGGAAACCGTGGACGACGTGGGCCAACTGGAAACCGAGGACGTTCTGGAC CACCAGGACCCTCAGGGCGTGATGGATCAAAAGGATCTCCAGGAGAAGCT GGATTACCAGGACGACCAGGAGACAATGGTGCACCAGGAATGGCAGGAAA GGACGGAAGCAATGGAGATCCAGGAGATGATGGTATCCCTGGTATTCAAG GAACAATGGGTGCTGCTGGACCAATAGGCGCCCGTGGATCCCCAGGACGT GTTGGTATGCCAGGATTTCCAGGATCTCAAGGAAAATCCGGTGAAAAGGG AGAACCAGGAGTTGCTGGAACCGCAGGAAAGGCTGGAAAGAAAGGACCTC CAGGACCACAAGGTGTCGCCGGTGCTACCGGATTCCCAGGAAAACCAGGA AAAGACGTAAGGACCCTTTAACTTTCTTTTCTATACTTCAAAGCTATTTC AATGGAAAGTATTTCTGAACTTACTTGGTTTAATACGTTTACTTAATGTT TAATAATACTTGCGATCAATCATAACCTCATACGAGATAAAGGACATCAA TAAATTTCCATTTTCAGGGAGCTGGTGGAAAAGATGGAAAAGCAGGAGGC CCTGGTGAAGTTGGAACAAAAGGTGATGCAGGAACACCCGGATATCCCGG ATCACCGGGAACGGCAGGTATGCCCGGAATCGCTGGAGCTGCTGGTACTA AAGGCAAGAGCGGATCGAAAGGAATGGCTGTAAGTTGATGATATGAACTT TTGGAATTTTCAAAAATTTAATTGTTGGTCCTATATTTACAAGATACAGA ATTCATATAAATTAAGCTTGAACCAGACAGACAACATGAGTAGACATAGA ACATTATATAAATTTGCCCCAACAAATCGNGCAGGTATGCCCGGAATCGC TGGAGCTGCTGGTACTAAAGGCAAGAGCGGATCAAAAGGAATGGCTGTAA GTTGATGATATGAACTTTTGGAATTTTCAAAAGTTTAATTGTTGGTCCTA TATTTACAAGATACAGAATTTATATAAATTATTAAAGGTAAGAGCTTAGA GGCTTGAACCAGACAGACAACATGGTTAGACATAGAACATTTTATAAATT TTCCCCAACAAATCGAGGTAGGGAGGGGGAGAAATAAACCACATTAAAGA CTGATAATCGGAAGATCCTAAAGATATCCACTATGTGAAAATCTCGAATT TGATTACTTTTCTCTAGGGACGAGATGGAGCTAAAGGAAGCAAAGGTCTC CAAGGACGAGATGGAACCATTGGCAACAGAGGTGCCAAGGGAAACAAAGG AAATAACGGAGATACAGGAGAAAAGGGAGACAAAGGATGGAGAGGTATGA CTGGCCCAACTGGTCTTCCAGGACCCATTGGTATGCAAGGAGAAGTCGGT GTCGATGGACCAAAAGGAGCCTCCGGACCCGCCGGAGATGATGGACCAAG AGGACGCGCTGGACGCGAAGGACCACCCGGAGGACTCGGAGATGCTGGAC CAGAAGGAATTAAAGGATCCAATGGACCACGAGGACGAGGCGGTGAAGAC GGTATTCCAGGACCTTCTGGACCACCCGGACCTCCAGGACCCCCAGGATT GCCAGGAGGTTTTGGTGCCGGTGGTTTAACTTTGCCTCCGTTTGGCGGGA ACACGGAGAAAGGACCAGCATACCAACAATACCAAGGCTACAAATACTAC AAATCTGAAGAAGGCAAAGACTTCAAGACTGAAGCCAAAGAAACACAAGG AACCGTTTTCTCATACGTTCTCAAACTTGATGAGACCATCCAAGGAATTG AGAAACCCGATGGTACTAAAGCATTCCCTGCCAAGACTTGCCAAGATTTA CAAATGTGCCACCCAGATGTCGAAACAGGTACTTAAANNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNTAAAATACAATCCTTATTGACTTGAAGCTTTAGTAGGCCT TTCAAAGTAACTGAAGTGATATTGGAACAAAATAATCAGCGCTTAGAGAC AACTCTGCTTTTTGGTAAATAAGAGCTTGAAAAGAGTCACATATTACAGT TTGAACTATTTTTCAAAAGATATGAACTGGATTTTTTACTATATACAAAG CTTTATTTATATTCTAAAGTTGGTTAAAGCATAGGTTAAAGGTTTTATTT TTAAAACAGTAATTTATGTGCTTCGAGGAATGAATTATGAATGTGTCTGT AATAAAACACACAAAGGTGTACATTAAAAATACTTCCGTTAAGTTAAGAA TTATAATTCTTCTTCCTACTTCAGACGAATACTGGTTGGATCCAAACGGA GGTTCATCATGGGACAAATTCCCAGCACGTTGTGACTTTGATAACAAGAA ACACGAGACATGCGTGCCACCGCACAAAGCTACTTTCGACAAGAAAGAAT GGGTCACCAGTGGTACTGATAAATGGACCTGGTTCTTACGCGATCTTGCC ATCTCTGATGACGTAAGTACCCACACTTTGAAAGTTTTAAGTGAAAATCA CACTTGATTCAAATTAACTATTTTCTAGCAATTCCTCAGCCCGAGGCTCC AAAATTAGGAAAAAAAAGATAAATATTCCTCCAAGGAATAAAAGTTTTTT CAGTAAGATCCAATCATTTTCAAAGATATAAACTTTAAGGCAATAAATAA ATTTAGGGGCTGCTTTTATGGAGGTGGGCTGGACCGGCTAGCTGAGGTGG AATGGTGGAATTTTCGAACGTTACGTCACAGTTTTTGACGAACCAAATGG CTAAAAACAGATCACGTGACGTTCGAAAATCCATCCCACCCCACATAGCC GGACCAGCCTGTCTCCACATGAACAGCTCCTAACAGATAATGAGTTTAAG AGGTCCTCTGAAGATGAAGATATCGACTTACAAAGAAGGGTTGGTCTAGT CCAAACCCTATTGAAGTTCAGCTAAATCTTTCTGAATCAGACTTATTAGT CGTTTTCATTTTCGACTAAAAGATCTGTATCTTTAAATTTCTAAACTGCA TGAACGATCTAACATGTATATTCCTTCAACCTCTGAGAGACTTTTCAATC AAAGCTCCTTTTTTTATTTTCTAGTTCGACTTCCCAGCCAACAATGTTCA ATTGAGATACATGCGNTCTGAGAGACTTTTCAATCAAAGCTCCTTTTCTT ATTCTCTAGTTCGACTTCCCAGCCAACAATGTTCAATTGAGATACATGCG CTTGAACAGCATGACTGTCCGACAAAACATCACCTATCACTGCAAGAACT CACACGCACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001844XLOC_001844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003332-exon-sc0000026-1575043694:316408..316664TCONS_00003332-exon-sc0000026-1575043694:316408..316664Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:313575..313795TCONS_00003332-exon-sc0000026-1575043694:313575..313795Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:312996..313151TCONS_00003332-exon-sc0000026-1575043694:312996..313151Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:312431..312694TCONS_00003332-exon-sc0000026-1575043694:312431..312694Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:311865..312170TCONS_00003332-exon-sc0000026-1575043694:311865..312170Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:311629..311665TCONS_00003332-exon-sc0000026-1575043694:311629..311665Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:310045..311078TCONS_00003332-exon-sc0000026-1575043694:310045..311078Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:309708..309869TCONS_00003332-exon-sc0000026-1575043694:309708..309869Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:309029..309406TCONS_00003332-exon-sc0000026-1575043694:309029..309406Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:307859..308290TCONS_00003332-exon-sc0000026-1575043694:307859..308290Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:307598..307697TCONS_00003332-exon-sc0000026-1575043694:307598..307697Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:307319..307380TCONS_00003332-exon-sc0000026-1575043694:307319..307380Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:306387..307047TCONS_00003332-exon-sc0000026-1575043694:306387..307047Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:305703..305890TCONS_00003332-exon-sc0000026-1575043694:305703..305890Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:305055..305090TCONS_00003332-exon-sc0000026-1575043694:305055..305090Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1575043694:304903..304969TCONS_00003332-exon-sc0000026-1575043694:304903..304969Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:316408..316664TCONS_00003332-exon-sc0000026-1510915933:316408..316664Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:313575..313795TCONS_00003332-exon-sc0000026-1510915933:313575..313795Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:312996..313151TCONS_00003332-exon-sc0000026-1510915933:312996..313151Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:312431..312694TCONS_00003332-exon-sc0000026-1510915933:312431..312694Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:311865..312170TCONS_00003332-exon-sc0000026-1510915933:311865..312170Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:311629..311665TCONS_00003332-exon-sc0000026-1510915933:311629..311665Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:310045..311078TCONS_00003332-exon-sc0000026-1510915933:310045..311078Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:309708..309869TCONS_00003332-exon-sc0000026-1510915933:309708..309869Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:309029..309406TCONS_00003332-exon-sc0000026-1510915933:309029..309406Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:307859..308290TCONS_00003332-exon-sc0000026-1510915933:307859..308290Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:307598..307697TCONS_00003332-exon-sc0000026-1510915933:307598..307697Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:307319..307380TCONS_00003332-exon-sc0000026-1510915933:307319..307380Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:306387..307047TCONS_00003332-exon-sc0000026-1510915933:306387..307047Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:305703..305890TCONS_00003332-exon-sc0000026-1510915933:305703..305890Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:305055..305090TCONS_00003332-exon-sc0000026-1510915933:305055..305090Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1510915933:304903..304969TCONS_00003332-exon-sc0000026-1510915933:304903..304969Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:316408..316664TCONS_00003332-exon-sc0000026-1491911889:316408..316664Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:313575..313795TCONS_00003332-exon-sc0000026-1491911889:313575..313795Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:312996..313151TCONS_00003332-exon-sc0000026-1491911889:312996..313151Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:312431..312694TCONS_00003332-exon-sc0000026-1491911889:312431..312694Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:311865..312170TCONS_00003332-exon-sc0000026-1491911889:311865..312170Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:311629..311665TCONS_00003332-exon-sc0000026-1491911889:311629..311665Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:310045..311078TCONS_00003332-exon-sc0000026-1491911889:310045..311078Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:309708..309869TCONS_00003332-exon-sc0000026-1491911889:309708..309869Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:309029..309406TCONS_00003332-exon-sc0000026-1491911889:309029..309406Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:307859..308290TCONS_00003332-exon-sc0000026-1491911889:307859..308290Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:307598..307697TCONS_00003332-exon-sc0000026-1491911889:307598..307697Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:307319..307380TCONS_00003332-exon-sc0000026-1491911889:307319..307380Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:306387..307047TCONS_00003332-exon-sc0000026-1491911889:306387..307047Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:305703..305890TCONS_00003332-exon-sc0000026-1491911889:305703..305890Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:305055..305090TCONS_00003332-exon-sc0000026-1491911889:305055..305090Clytia hemisphaericaexon
TCONS_00003332-exon-sc0000026-1491911889:304903..304969TCONS_00003332-exon-sc0000026-1491911889:304903..304969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:304903..316664 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0213618 0 0.0181228 0 14.5008 14.5511 94.6696 107.532 63.2174 114.395 73.0376 39.4457 100.769 90.1272 100.222 93.4531 54.489 56.4428 164.688 100.809 8.56573 12.3502 6.64544 8.60309 3.27544 4.43153 1.04715 2.70864 52.6607 49.0943
Blast
BLAST of TCONS_00003332 vs. Swiss-Prot (Human)
Match: CO2A1 (Collagen alpha-1(II) chain OS=Homo sapiens GN=COL2A1 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 6.735e-29
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 2
Query: 3929 KETQGTVFSYVLKLDETIQGIEKPDGTKAFPAKTCQDLQMCHPDVETDEYWLDPNGGSSWDKFPARCDFDNKKHETCVPPHKATFDKKEWVTSGT--DKWTWFLRDL------AISDDFDFP-ANNVQLRYMRLNSMTVRQNITYHCKNSHAH 4360
            ++    V + +  L+  I+ I  P+G++  PA+TC+DL++CHP+ ++ +YW+DPN G + D     C+ +    ETCV P+ A   KK W +S +   K  WF   +      +  DD   P   NVQ+ ++RL S    QNITYHCKNS A+
Sbjct: 1249 RQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMET--GETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAY 1399          
The following BLAST results are available for this feature:
BLAST of TCONS_00003332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO2A16.735e-2936.60Collagen alpha-1(II) chain OS=Homo sapiens GN=COL2... [more]
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