TCONS_00003330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003330
Unique NameTCONS_00003330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003330 ID=TCONS_00003330|Name=TCONS_00003330|organism=Clytia hemisphaerica|type=transcript|length=4712bp
AAGGATTCCATAAAGCTTACCCGTGGAAAGTGAATGAGATAGAGTAGGAA
AGGCGAGGAGTGGTTCAAAGAGCAACCTTACTTTGAATTAATACGATCGT
TGTGGAAAGAGCTGGGACTGGTTAGTTGCTTGCACCTACGGTGATCGAAG
CAGGCTTTTGGCCAGCCAGCATACAAAAATGCGCTTTTCCACTGGCGAAC
GACAACTTTGGTTGTTGTTCATAGCTGTATTCAGCACGCTCGCAAACGCT
CAAGAAGCGGGGAAACCAGGAGAATGTCCAGTGATTGATACAGATTCGAA
AGCGGAATGTCCACCGTTGACTGCAGGTTTGAACAGTTGCTTATTGGACA
CTGATTGTCCCGGATCACAAAAATGTTGTACTGATGGTTGTACTTTGGTT
TGTACCACTGTTGTCGTTCCAACAAGACCTACACCCATCAAAGGGGAACC
AGGAGATCCAGGTGAACCAGGAGAAGATGGACCTAATGGACAAAAAGGCC
CAGATGGAAGGCGAGGTTTTGGTGGAGTCAAAGGATTGAAAGGAACCAGT
GGAAAACAAGGACAAAAAGGAAAACGCGGCAGACCTGGACCCCCAGGACC
ACCAGCTGGCACTGGCACCGGCCCAGTTGGGCCACTCGGAGAGAAAGGCG
GCAATGGGGACGAAAAAGGTCCTGGACCAAATGCTGGAGGTGAATTTGAT
AACCTTAATGAAAATGGTTTTGTCACACCAAAAGAAGGGCCACCAGGACC
ATTAGGGCCAAAAGGACGCGAAGGTCCCCGAGGACCATATGGAGAACGCG
GAGAGCCAGGACTTCCTGGAGAAGCTGGCGGTGCTGGCGAAAAAGGAGAA
CTTGGTCCAACCGGATCTGCTGGAGAAGCTGGTCGCGATGGAATCAATGG
TGAACGTGGAGACCCAGGAAGAATCGGCCAAACTGGACCAAGAGGAAGTC
AAGGAGACCGAGGACCCCAAGGCGTCCGTGGAGCTGCCGGTTACAAAGGA
TTGAAGGGAGATCGCGGAGAGACTGGTGAAAAAGGAGGCACTGGAATTGA
AGGAGATAAAGGAATAGCTGGAGACAATGGTCTGGATGGTGATAGTGGAC
CACGAGGACCACAAGGTTTACAAGGTTCCCCAGGACCTGCTGGAACATCA
GGACCAACTGGACCTAAGGGACCACTTGGATCGACTGGACCTCCAGGACC
ACCAGGACCTGCAGGATTACCAGGAACACCAGGAAAAGCAGGTGTCGATG
GGGCCAAAGGAGAAGATGGAGCTTTCGGATCAAGAGGTGAACGTGGAGAA
CAAGGAATCCGTGGAGTGACTGGAGATGCTGGACCAAAGGGAGATGTTGG
TCAACCTGGTGCCCGTGGCCGAGATGGTAGACAAGGGAAGAAGGGAAGCC
AAGGTATGGCTGGNATAGCTGGAGACAATGGTCTGGATGGTGATAGTGGA
CCACGAGGACCACAAGGTTTACAAGGTTCCCCAGGACCTGCTGGAACATC
AGGACCAACTGGACCTAAGGGACCACTTGGATCGACTGGACCTCCAGGAC
CACCAGGACCTGCAGGATTACCAGGAACGCCAGGAGAAGCAGGTGTCGAT
GGGGCCAAAGGAGAAGATGGAGCTTTCGGATCAAGAGGTGAACGTGGAGA
ACAAGGAATCCGTGGAGTGACTGGAGATGCTGGACCAAAGGGAGATGTTG
GTCAACCTGGTGCCCGTGGCCGAGATGGTAGACAAGGGAAGAAGGGAAGC
CAAGGTATGGCTGGACCTCAAGGACAACGAGGACCCCCAGGTACTCGAGG
ACTTCAAGGTTTAAGAGGACCCGACGGAAGTATTGGAGGAACTGGTACCC
GAGGAGAACCAGGAGAACAAGGTGGTCTTGGTCTAGCAGGTCTCAAAGGA
ACTCGTGGAGATCCAGGACCACCAGGAAACCCAGGACCAGCTGGAGGACC
AGGGAAACGAGGAAAAGCTGGTCGGGATGGGCCTAATGGGCCCGCAGGAC
CTGATGGCGAACGTGGACAACAAGGTTTACCAGGAAGCCCTGGAGACCCA
GGAACCCCAGGACCAAAAGGGCAACAAGGAGACCGTGGAGAGATCGGTAA
ACGAGGATTGAAAGGATCATCTGGAGGACCAGGAGAGCCAGGAGAAGTTG
GACCACAGGGAGATCGTGGACCATCAGGGCCACCAGGAAAATCAGGAAGA
CCAGGAAAATCTGGACAACGTGGTGTCCCAGGAAAAGACGGAAGGCCAGG
ACTGATGGGACAACAAGGACGACGCGGTCTTGTCGGATCACAAGGTCTTC
AAGGACCAAAAGGAGCCAGAGGACCATCTGGAGGAATTGGTGAACCAGGA
AGCGTTGGGCTTAAAGGTAATACTGGAGACAAAGGACAAAAAGGAGCCCA
AGGACAAGCTGGACCTCAAGGTATCGATGGCGCTGCTGGAGAATTGGGTG
CTCCTGGAGCCCCTGGAAATGCAGGAAGAACAGGACCACCGGGACCCGTC
GGAGAAGCCGGTGCCCCAGGCCGTGATGGAGAACCAGGAAAAGATGGACT
TCGAGGAGACAATGGAAAAACAGGAGAACAAGGTCCAAGAGGTCCACCTG
GAGCTAACGGACCAACTGGCCTGAGAGGATCGCCTGGATTGAATGGAGAA
AGTGGAGAACCAGGAGCAGAAGGAATCCCAGGAGAAAAAGGACCTTCTGG
ACCAAACGGAGTCACTGGATCTCCAGGAGCACCAGGTGCCCAAGGATCTC
CAGGAATGAGAGGACCCGATGGATCAAAAGGAGAACATGGTTCCAGAGGG
CCAAAAGGACAACCAggagaaaatggcaaaaatggaCAAAGAGGAGCTGA
TGGATTACCAGGACCAGCTGGACCTTCAGGAGAAACTGGACCTAAGGGAG
AAACCGGACGACCAGGAGCTAACGGACTTCAAGGAAAACGTGGAAAACCA
GGATCACAAGGAAACCCAGGATCATCTGGATTACCAGGAGAGCCAGGATC
TATTGGATTAAGAGGAGGAGATGGCTCCAAGGGAGAGCGAGGACCTCGTG
GAGATAAGGGTGTTTCTGGCAAATCTGGACCACCTGGACCTGACGGAGAT
ATTGGTCAAATTGGGCAGATAGGATCGGATGGTAACAAAGGATCGAAAGG
CCCAAGAGGATCAGCTGGTAACCAAGGAGCACCAGGTATCCCAGGAAACC
GTGGACGACGTGGGCCAACTGGAAACCGAGGACGTTCTGGACCACCAGGA
CCCTCAGGGCGTGATGGATCAAAAGGATCTCCAGGAGAAGCTGGATTACC
AGGACGACCAGGAGACAATGGTGCACCAGGAATGGCAGGAAAGGACGGAA
GCAATGGAGATCCAGGAGATGATGGTATCCCTGGTATTCAAGGAACAATG
GGTGCTGCTGGACCAATAGGCGCCCGTGGATCCCCAGGACGTGTTGGTAT
GCCAGGATTTCCAGGATCTCAAGGAAAATCCGGTGAAAAGGGAGAACCAG
GAGTTGCTGGAACCGCAGGAAAGGCTGGAAAGAAAGGACCTCCAGGACCA
CAAGGTGTCGCCGGTGCTACCGGATTCCCAGGAAAACCAGGAAAAGACGG
AGCTGGTGGAAAAGATGGAAAAGCAGGAGGCCCTGGTGAAGTTGGAACAA
AAGGTGATGCAGGAACACCCGGATATCCCGGATCACCGGGAACGGCAGGT
ATGCCCGGAATCGCTGGAGCTGCTGGTACTAAAGGCAAGAGCGGATCAAA
AGGAATGGCTGGACGAGATggagctaaaggaagcaaaggTCTCCAAGGAC
GAGATGGAACCATTGGCAACAGAGGTGCCAAGGGAAACAAAGGAAATAAC
GGAGATACAGGAGAAAAGGGAGACAAAGGATGGAGAGGTATGACTGGCCC
AACTGGTCTTCCAGGACCCATTGGTATGCAAGGAGAAGTCGGTGTCGATG
GACCAAAAGGAGCCTCCGGACCCGCCGGAGATGATGGACCAAGAGGACGC
GCTGGACGCGAAGGACCACCCGGAGGACTCGGAGATGCTGGACCAGAAGG
AATTAAAGGATCCAATGGACCACGAGGACGAGGCGGTGAAGACGGTATTC
CAGGACCTTCTGGACCACCCGGACCTCCAGGACCCCCAGGATTGCCAGGA
GGTTTTGGTGCCGGTGGTTTAACTTTGCCTCCGTTTGGCGGGAACACGGA
GAAAGGACCAGCATACCAACAATACCAAGGCTACAAATACTACAAATCTG
AAGAAGGCAAAGACTTCAAGACTGAAGCCAAAGAAACACAAGGAACCGTT
TTCTCATACGTTCTCAAACTTGATGAGACCATCCAAGGAATTGAGAAACC
CGATGGTACTAAAGCATTCCCTGCCAAGACTTGCCAAGATTTACAAATGT
GCCACCCAGATGTCGAAACAGACGAATACTGGTTGGATCCAAACGGAGGT
TCATCATGGGACAAATTCCCAGCACGTTGTGACTTTGATAACAAGAAACA
CGAGACATGCGTGCCACCGCACAAAGCTACTTTCGACAAGAAAGAATGGG
TCACCAGTGGTACTGATAAATGGACCTGGTTCTTACGCGATCTTGCCATC
TCTGATGACttCGACTTCCCAGCCAACAATGTTCAATTGAGATACATGCG
CTTGAACAGCATGACTGTCCGACAAAACATCACCTATCACTGCAAGAACT
CACACGCACATA
Run BLAST on NCBI

transcript from alignment at sc0000026:304903..316664-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003330 ID=TCONS_00003330|Name=TCONS_00003330|organism=Clytia hemisphaerica|type=transcript|length=11762bp|location=Sequence derived from alignment at sc0000026:304903..316664- (Clytia hemisphaerica)
AAGGATTCCATAAAGCTTACCCGTGGAAAGTGAATGAGATAGAGTAGGAA
AGGCGAGGAGTGGTTCAAAGAGCAACCTTACTTTGAATTAATACGATCGT
TGTGGAAAGAGCTGGGACTGGTTAGTTGCTTGCACCTACGGTGATCGAAG
CAGGCTTTTGGCCAGCCAGCATACAAAAATGCGCTTTTCCACTGGCGAAC
GACAACTTTGGTTGTTGTTCATAGCTGTATTCAGCACGCTCGCAAACGCT
CAAGAAGGTAAGTTAGTTTCAAAGCTATATGATTAATAATTGGAGTAAAA
GACTAGACCTTTAGTCTAAAGGTTCACGACTAGAAATGTAATACCTAAAG
GGAATAAATTTTCTAAGCAAAAAGTCAAGGTCTTATATATCTTCTTATAT
TTGTCTTAATGATATTAAGTAAGGGGAAGTAAAGGAAGAAATCTCAAGGG
TTGGAACCAAAATATAAAATAATGATTACATACTAAGGAAGAATTTTTCT
ATCAGAAACCCGAAGAAAGACCATAGCCAAAAAGATTCTATCAGATATTT
CTGAGAATCTAGAGAAAATCTTTGCGGTTTTGAGCGTCTTAATTCGAGAT
TTATGATTTCAAAACTGAAAATAAGACACAACAAATTTATTTTTAGAATT
ACTATGTAAAAGAGACCATTCTTATACTTTACATCTCCTTGACAACAATG
TATTATGAAATGACACGATTTTTGACTGACATACAGTAAATCAAGAGCCG
AAATGATTTTAAATCGTGATATTTTTTTATTATGAGCTGCTAAAAGAGAC
TAATAAAAAAAGGCCATAAATCACGAAGTTAACCGAAGGGTAATTTTTAA
TGCAAAATCTTAAAATCTGATGCCCAGTTAAGCTAAAACTCGAACTTGTT
TGAAACTTTAAAACAAATAAACTAAGGTTTTTCTGAAGTTAAAGGTCTCG
AAATGAAGGGTAGAAATTTTTTCTTGTACACGTTTTTTTATAAGAACATC
CAAAATTTTTGAAGCCTTTGGATGTTTTGTGTTTAAAGCCTAAAATGTTC
TTAACATGTTCTTATTTTGACCATTTTGTGAGAATTTTGGTCCATTTTCC
CGAGATATTGGGTATTTTATATAGTCCGCAAAGCCTTAAATGTTCTTAAC
ATGTTCTTAAAATTTTGGCCGTAGAAGTCTTGTGTTCTTATAAAAAAACG
TGCAATGCTCATGTTGCTGTTGCATCATGGCCTAGCGAATTTATTTCTAA
ACGGACGGCAGATAATTTCAAAAGGAGGAAATCAGCACACTTGACATTTT
CTTTCCTTGAAAAGGTCATATTACTCGTTAAGTAACAGAGGGAAAAATTT
TTTAAGCAAAACACGCCTGTCTAGAAATTTTTTTCTTACGAAGTATCGGA
AACACGTAGCTTCAATTTATGCATCAATGTGTTAAACAAGTTTTATGTTA
GATCATTATGAGCTAGTGTCTGGAATAAATACTGGTCGAAGCAAAGATTT
TTGTTTCAGACAGGTTTTTTTTTGTATAACAAATTAGCCCAAACTTTTAT
ACTCTCATTGAATACTTTGCCAAAAATGCGCCATTTTTCAGCCTGTGCTG
GAAGCACTGCAATAAAATTTGTGAAGAATAACAGATAAAAAAACAATAAA
ATTCAGAAAATTCTGATTAGAATTGGGTGTAAATTCAAATTTCGAATCTC
ATTTACGAGCCAAAAGAAAAGAAGTTTAGGCATTTTTCTCATTTGAAAGA
AATTCGAACACCAAATATATCTTATGTGTCAAATCATTTGAAAGATAGGG
AAATAAACAAAATAGAGAAGACAATAAACGTTTTTTGTAATAACATCCAA
AAGATTGGGTTCTTATCTTTGTGAGTTTTAAGCCTAAAAATGTTCTTATT
TTCACCTTGTTGAGGTACTTTGTCCATTTTCCGAAGAAATCGGGTGTTTT
AGAGTCTGCAAAGCCTTGAAATGTTCTTAGCTTGTTCTTAATAATTTGGC
CATCAAAGCCTTAGATTCTTATATAATTTGTTCTTATAAAAAACGTGTAA
ATCATTAACACTGTTTGGTGACTTCAACCTTGTGTAAACAAAACAGTTGA
TGGAGAAAGAAAGATATTCAAGTGTTTGAAAAAGGGGTTCACTATGGCTG
TGTTTACATTATAAACATTGGGTCATTCCATTCCACTCTGTTTACATTGT
CAACATTCTTACTATACCCCAATACACGTTTTTTTTATAAGAACATACTA
TATAAGAACATAAGGCTTCGAGGCCCAAAAATTTAAGAACATTCTAAGAA
CATTCTAAGGCTTTGGGGACTTAAAAACATGCATTTTCTTAAGAAATTAC
ACCAAATGCTCAAAAAATGCTGAAAATAAGAACATTTTAAGAACATTTTT
AGGCTTCAAATCAAAAAAACTAAGAACATCCGAAGGCTTTGAGAATTTTT
GACGTTCTTATAAAAAAAAAACGTGTACTGTCAGTTGATAGAATTATGAA
AGGAAAGGCGCCTCAAACCTTTCTTTATCCCCTCAAATTAGACAATAATT
TTAGCACCTTAGGAAGCTTATGGCCTTTCTGACATTCGGTATACTTTTAA
ATAATGATGTCAGGAAACATGACCGATAGTTTGTGGCATTTTGATTTCTA
CTGGACTCATACACGTTTTATATATAAGAATGAAGTATATAAGAACATAA
GACCAAATTGCAGCCTACAGAAAATTTTGAGAAACTTAAAAACTTTAGAA
TAGCATTAAAAGAATTCGAAATTTTTCGACACTTATAAAAAAACGTGTAA
ACATGTTTTTCAAGTTTAAAGGGGTTAAAACGAATGACTAATTTTCTCCA
TTCTGATTATATTTTACAGCGGGGAAACCAGGAGAATGTCCAGTGATTGA
TACAGATTCGAAAGCGGAATGTCCACCGTTGACTGCAGGTTTGAACAGTT
GCTTATTGGACACTGATTGTCCCGGATCACAAAAATGTTGTACTGATGGT
TGTACTTTGGTTTGTACCACTGTTGTCGTTCCAACAAGACCTACACCCAT
CAAAGGGGAACCAGGAGATCCAGGTGAACCAGGAGAAGATGTAAGAATGA
TTTATTTTTTATCAGGCCTTGGTAATATAAAAATCTTAAGTATGCAAGGA
TCTTGCTTATTTTAGGTTTTATCCACACTGTAAAAATACAAATTTCTCTT
TTGAAAAATATACTGGACTATCAAAAGCTTGACAAATACTTAAATAGGGT
TAATTTCGCGGATGGCACTTTTGGGTGGCAATATTTTAACGATTTTGTAC
ATTATAAGCAACTCTTTGATGCTGTAAACATTCAAACAGTGTTTCTTTGA
CATTTTTCTAGTTTTGTTTAGAAATATTTCGCGGATAAGGTCTTTTCAAA
TTTCCATTGGGATTTAATTTCGTGGATAACACCCAAATCCGCGAAATTTA
ACCCCCGCCAAAATTAATCCAATTAAAGTAGATCATTAAATTAATTGGCA
TACAAATTTTTAGGGACCTAATGGACAAAAAGGCCCAGATGGAAGGCGAG
GTTTTGGTGGAGTCAAAGGATTGAAAGGAACCAGTGGAAAACAAGGACAA
AAAGGAAAACGCGGCAGACCTGGACCCCCAGGACCACCAGCTGGCACTGG
CACCGGCCCAGTTGGGCCAGTAAGTTTGAGAATTCAGAATTTCACACTAG
AGACCAGACTCGATAACCTAACATTAACTTAAACCAAAAAATCGCTGAAC
ATTTTCCAAAATATTTTGATACATTTCCATCATTACGTCGATGGAATTTT
AAACGCTTACTGATCGACAATATATTGCTGTAGTCTAGGCAGGCTTCGAC
CAGTTTCACTATAATAAGTTCAATCCTGTACCTTAAACATTACTGTTGGG
AATTTAGACTCCAGAGTTTATGAAATACAACATCTCCACATCAGAACTAA
TTTTGAGACTTGTTTTATAGCTCGGAGAGAAAGGCGGCAATGGGGACGAA
AAAGGTCCTGGACCAAATGCTGGAGGTGAATTTGATAACCTTAATGAAAA
TGGTTTTGTCACACCAAAAGAAGGGCCACCAGGACCATTAGGGCCAAAAG
GACGCGAAGGTCCCCGAGGACCATATGGAGAACGCGGAGAGCCAGGACTT
CCTGGAGAAGCTGGCGGTGCTGGCGAAAAAGGAGAACTTGGTCCAACCGG
ATCTGCTGGAGAAGCTGGTCGCGATGGAATCAATGTAAGTAACGTATGGG
ACAAAAAAATTGCTTTGGAGCTTCCTTTCTAAAGGAGGGAGGATGTTGAA
ATTCTTCATTTAGATGACAAAAACCGATTTAAAATTTGAAAACATAACTA
TTGTCAATTTTTATTGAAGAAAATGACTGAGAAGGAATGATTTCTATTAA
AACTCAAAGAACTTCTTTTTGATATACTTCAAAATTGGAAACGCAAATAT
AAGATGAAGGAGTGAATGAATGAATAAATAACCTTTTTTATTAGGGTGAA
CGTGGAGACCCAGGAAGAATCGGCCAAACTGGACCAAGAGGAAGTCAAGG
AGACCGAGGACCCCAAGGCGTCCGTGGAGCTGCCGGTTACAAAGGATTGA
AGGGAGATCGCGGAGAGACTGGTGAAAAAGGAGGCACTGGAATTGAAGGA
GATAAAGGAATAGCTGGAGACAATGGTCTGGATGGTGATAGTGGACCACG
AGGACCACAAGGTTTACAAGGTTCCCCAGGACCTGCTGGAACATCAGGAC
CAACTGGACCTAAGGGACCACTTGGATCGACTGGACCTCCAGGACCACCA
GTAAGTATTAGTTACTTAAATTCCCTTCACTTTTGACGTCAAAAAGAAAC
ATTCTCGAATTGTATTTCATTATTTACAATATTTCCGCAGTTAAATCCTA
AAAACGAGAAAATTAGATTGAAATAAATTTTGGCCAGATAAAAATGTAAC
ACCAATGGCAAGATATCCTGAATATTAACTATTCCATAACTATTTTCAGG
GACCTGCAGGATTACCAGGAACACCAGGAAAAGCAGGTGTCGATGGGGCC
AAAGGAGAAGATGGAGCTTTCGGATCAAGAGGTGAACGTGGAGAACAAGG
AATCCGTGGAGTGACTGGAGATGCTGGACCAAAGGGAGATGTTGGTCAAC
CTGGTGCCCGTGGCCGAGATGGTAGACAAGGGAAGAAGGGAAGCCAAGGT
ATGGCTGGNATAGCTGGAGACAATGGTCTGGATGGTGATAGTGGACCACG
AGGACCACAAGGTTTACAAGGTTCCCCAGGACCTGCTGGAACATCAGGAC
CAACTGGACCTAAGGGACCACTTGGATCGACTGGACCTCCAGGACCACCA
GTAAGTATTAGTTACTTAAATTCCCTTCACTTTTGACGTCAAAAAGAAAC
ATTCTCGAATTGTATTTCATTATTTACAATATTTCCGCAGTTAAATCCTA
AAAACGAGAAAATTAGATTGAAATAAATTTTGGCTAGATAAAAATGTAAC
ACCAATGGCAAGATATCCTGAATATTAACTATTCCATAACTATTTTCAGG
GACCTGCAGGATTACCAGGAACGCCAGGAGAAGCAGGTGTCGATGGGGCC
AAAGGAGAAGATGGAGCTTTCGGATCAAGAGGTGAACGTGGAGAACAAGG
AATCCGTGGAGTGACTGGAGATGCTGGACCAAAGGGAGATGTTGGTCAAC
CTGGTGCCCGTGGCCGAGATGGTAGACAAGGGAAGAAGGGAAGCCAAGGT
ATGGCTGGACCTCAAGGACAACGAGGACCCCCAGGTACTCGAGGACTTCA
AGGTTTAAGAGGACCCGACGGAAGTATTGGAGGAACTGGTACCCGAGGAG
AACCAGGAGAACAAGGTGGTCTTGGTCTAGCAGGTCTCAAAGGAACTCGT
GGAGATCCAGGACCACCAGGAAACCCAGGACCAGCTGGAGGACCAGGGAA
ACGAGGAAAAGCTGGTCGGGATGGGCCTAATGGGCCCGCAGGACCTGATG
GCGAACGTGGACAACAAGGTTTACCAGGAAGCCCTGGAGACCCAGGAACC
CCAGGACCAAAAGGGCAACAAGGAGACCGTGGAGAGATCGGTAAACGAGG
ATTGAAAGGATCATCTGGAGGACCAGGAGAGCCAGGAGAAGTTGGACCAC
AGGGAGATCGTGGACCATCAGGGCCACCAGGAAAATCAGGAAGACCAGGA
AAATCTGGACAACGTGGTGTCCCAGGAAAAGACGGAAGGCCAGGACTGAT
GGGACAACAAGGACGACGCGGTCTTGTCGGATCACAAGGTCTTCAAGGAC
CAAAAGGAGCCAGAGGACCATCTGGAGGAATTGGTGAACCAGGAAGCGTT
GGGCTTAAAGGTAATACTGGAGACAAAGGACAAAAAGGAGCCCAAGGACA
AGCTGGACCTCAAGGTATCGATGGCGCTGCTGGAGAATTGGGTGCTCCTG
GAGCCCCTGGAAATGCAGGAAGAACAGGACCACCGGGACCCGTCGGAGAA
GCCGGTGCCCCAGGCCGTGATGGAGAACCAGGAAAAGATGGACTTCGAGG
AGACAATGGAAAAACAGGAGAACAAGGTCCAAGAGGTCCACCTGGAGCTA
ACGGACCAACTGGCCTGAGAGTAAGTCGAACTTTTACTTGTTACCAAACC
CAAATAATCTATAAGTTATCTGAAAAATGAGCTTTTTCTCGAAAAGTTAC
TGAGAGTCCTTGGCTAGACCTTAACGAAGCCTTATTTGCCAAAATAAAAA
AATCATAGGTCATATAAATCATTTCAACAATTTCTTTCCTTCTAGGGATC
GCCTGGATTGAATGGAGAAAGTGGAGAACCAGGAGCAGAAGGAATCCCAG
GAGAAAAAGGACCTTCTGGACCAAACGGAGTCACTGGATCTCCAGGAGCA
CCAGGTGCCCAAGGATCTCCAGGAATGAGAGGACCCGATGGATCAAAAGG
AGAACATGTAAGCAGTTTTCAAATATATAAATCTTAATCTCAAGGAAAAA
AGTGAAAACCAGGGAAATTTATCTTTCAATCATCTTTCAATTGAGTCCTC
TAGAGCAATCGAATTCACAGAGGCTAGTTATCACCACCTATACTAACAAC
TGTACGTAACTTTGCGTAAAATCTGCCAGCAAGGAAAAAACATTCGATTT
TGAAAATTCAATTTTTCAGACAAATCGAATGTCTCGTCCATAATGGCGTA
AACTTTGAAACTTTCCAACCTAGACGAAACTCAATTCATCTTTCTTTCCC
ATTTTCAGGGTTCCAGAGGGCCAAAAGGACAACCAGGAGAAAATGGCAAA
AATGGACAAAGAGGAGCTGATGGATTACCAGGACCAGCTGGACCTTCAGG
AGAAACTGGACCTAAGGGAGAAACCGGACGACCAGGAGCTAACGGACTTC
AAGGAAAACGTGGAAAACCAGGATCACAAGGAAACCCAGGATCATCTGGA
TTACCAGGAGAGCCAGGATCTATTGGATTAAGAGGAGGAGATGGCTCCAA
GGGAGAGCGAGGACCTCGTGGAGATAAGGGTGTTTCTGGCAAATCTGGAC
CACCTGGACCTGACGGAGATATTGGTCAAATTGGGCAGATAGGATCGGAT
GGTAACAAAGGATCGAAAGGCCCAAGAGGATCAGCTGTAAGTATAAAACC
AATATTTATGAAGTGCTATATCCACAGTACAACTACCATCTGCATCTTTG
CCTGTCTTGCTGNATGAAGTGCTATATCCATAGTACAACTACCATCTGTA
TCTTTGCCTGTCTTGCTGTTTTTGTATCTTCATCCGTACATTTCGATAGC
CAACCGTAGTGCAGTGGTAGAGCATCCCACTACGGTTCGCAAGGTTGTGG
GTTCAACCCCCAGCCGGGTCATACCAAAGATTTTCAAAATGGTACCTGAT
GCCTATCTGCTTGATGCTCAACAATTAAAAGAAGGATCAAGGGTAAAGTT
GAGCAATCCAGGGAGAAAGAGTGGCGCCCTCCCTTACCTTCGGGTAGACA
GCTATCGAAAGAGGAGCCTCCGGGTCGCCTCCGACTGCGGTCGCAAACTC
ACTTACTTTTACTTGATAACTCTAAAAGGGAAAAATCTTACCAAGGAATG
TTATGCAATAACTGATGTGATATTTTCAGCACCTTCNCCTATCTGCTTGA
TGCTCAGCAATTAAAAGATCAAGGCTAAAGTTGAGCAATCCAGGGAGAAA
GAGTGACGCCCTCCCCTACCTTCGGGCAGAGGTCTAAAGAGGAGCCTTCG
GGTCGCCTCCGACTGCGGTCGCAAACTTACTTACTCTTACTTGATAACTC
TAAAAACCTTACCAAAGAATGTTATGCAATAACTGATGTGATACCTTTTA
AAACAATCTTAAATTACATTTTAGGGTAACCAAGGAGCACCAGGTATCCC
AGGAAACCGTGGACGACGTGGGCCAACTGGAAACCGAGGACGTTCTGGAC
CACCAGGACCCTCAGGGCGTGATGGATCAAAAGGATCTCCAGGAGAAGCT
GGATTACCAGGACGACCAGGAGACAATGGTGCACCAGGAATGGCAGGAAA
GGACGGAAGCAATGGAGATCCAGGAGATGATGGTATCCCTGGTATTCAAG
GAACAATGGGTGCTGCTGGACCAATAGGCGCCCGTGGATCCCCAGGACGT
GTTGGTATGCCAGGATTTCCAGGATCTCAAGGAAAATCCGGTGAAAAGGG
AGAACCAGGAGTTGCTGGAACCGCAGGAAAGGCTGGAAAGAAAGGACCTC
CAGGACCACAAGGTGTCGCCGGTGCTACCGGATTCCCAGGAAAACCAGGA
AAAGACGTAAGGACCCTTTAACTTTCTTTTCTATACTTCAAAGCTATTTC
AATGGAAAGTATTTCTGAACTTACTTGGTTTAATACGTTTACTTAATGTT
TAATAATACTTGCGATCAATCATAACCTCATACGAGATAAAGGACATCAA
TAAATTTCCATTTTCAGGGAGCTGGTGGAAAAGATGGAAAAGCAGGAGGC
CCTGGTGAAGTTGGAACAAAAGGTGATGCAGGAACACCCGGATATCCCGG
ATCACCGGGAACGGCAGGTATGCCCGGAATCGCTGGAGCTGCTGGTACTA
AAGGCAAGAGCGGATCGAAAGGAATGGCTGTAAGTTGATGATATGAACTT
TTGGAATTTTCAAAAATTTAATTGTTGGTCCTATATTTACAAGATACAGA
ATTCATATAAATTAAGCTTGAACCAGACAGACAACATGAGTAGACATAGA
ACATTATATAAATTTGCCCCAACAAATCGNGCAGGTATGCCCGGAATCGC
TGGAGCTGCTGGTACTAAAGGCAAGAGCGGATCAAAAGGAATGGCTGTAA
GTTGATGATATGAACTTTTGGAATTTTCAAAAGTTTAATTGTTGGTCCTA
TATTTACAAGATACAGAATTTATATAAATTATTAAAGGTAAGAGCTTAGA
GGCTTGAACCAGACAGACAACATGGTTAGACATAGAACATTTTATAAATT
TTCCCCAACAAATCGAGGTAGGGAGGGGGAGAAATAAACCACATTAAAGA
CTGATAATCGGAAGATCCTAAAGATATCCACTATGTGAAAATCTCGAATT
TGATTACTTTTCTCTAGGGACGAGATGGAGCTAAAGGAAGCAAAGGTCTC
CAAGGACGAGATGGAACCATTGGCAACAGAGGTGCCAAGGGAAACAAAGG
AAATAACGGAGATACAGGAGAAAAGGGAGACAAAGGATGGAGAGGTATGA
CTGGCCCAACTGGTCTTCCAGGACCCATTGGTATGCAAGGAGAAGTCGGT
GTCGATGGACCAAAAGGAGCCTCCGGACCCGCCGGAGATGATGGACCAAG
AGGACGCGCTGGACGCGAAGGACCACCCGGAGGACTCGGAGATGCTGGAC
CAGAAGGAATTAAAGGATCCAATGGACCACGAGGACGAGGCGGTGAAGAC
GGTATTCCAGGACCTTCTGGACCACCCGGACCTCCAGGACCCCCAGGATT
GCCAGGAGGTTTTGGTGCCGGTGGTTTAACTTTGCCTCCGTTTGGCGGGA
ACACGGAGAAAGGACCAGCATACCAACAATACCAAGGCTACAAATACTAC
AAATCTGAAGAAGGCAAAGACTTCAAGACTGAAGCCAAAGAAACACAAGG
AACCGTTTTCTCATACGTTCTCAAACTTGATGAGACCATCCAAGGAATTG
AGAAACCCGATGGTACTAAAGCATTCCCTGCCAAGACTTGCCAAGATTTA
CAAATGTGCCACCCAGATGTCGAAACAGGTACTTAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTAAAATACAATCCTTATTGACTTGAAGCTTTAGTAGGCCT
TTCAAAGTAACTGAAGTGATATTGGAACAAAATAATCAGCGCTTAGAGAC
AACTCTGCTTTTTGGTAAATAAGAGCTTGAAAAGAGTCACATATTACAGT
TTGAACTATTTTTCAAAAGATATGAACTGGATTTTTTACTATATACAAAG
CTTTATTTATATTCTAAAGTTGGTTAAAGCATAGGTTAAAGGTTTTATTT
TTAAAACAGTAATTTATGTGCTTCGAGGAATGAATTATGAATGTGTCTGT
AATAAAACACACAAAGGTGTACATTAAAAATACTTCCGTTAAGTTAAGAA
TTATAATTCTTCTTCCTACTTCAGACGAATACTGGTTGGATCCAAACGGA
GGTTCATCATGGGACAAATTCCCAGCACGTTGTGACTTTGATAACAAGAA
ACACGAGACATGCGTGCCACCGCACAAAGCTACTTTCGACAAGAAAGAAT
GGGTCACCAGTGGTACTGATAAATGGACCTGGTTCTTACGCGATCTTGCC
ATCTCTGATGACGTAAGTACCCACACTTTGAAAGTTTTAAGTGAAAATCA
CACTTGATTCAAATTAACTATTTTCTAGCAATTCCTCAGCCCGAGGCTCC
AAAATTAGGAAAAAAAAGATAAATATTCCTCCAAGGAATAAAAGTTTTTT
CAGTAAGATCCAATCATTTTCAAAGATATAAACTTTAAGGCAATAAATAA
ATTTAGGGGCTGCTTTTATGGAGGTGGGCTGGACCGGCTAGCTGAGGTGG
AATGGTGGAATTTTCGAACGTTACGTCACAGTTTTTGACGAACCAAATGG
CTAAAAACAGATCACGTGACGTTCGAAAATCCATCCCACCCCACATAGCC
GGACCAGCCTGTCTCCACATGAACAGCTCCTAACAGATAATGAGTTTAAG
AGGTCCTCTGAAGATGAAGATATCGACTTACAAAGAAGGGTTGGTCTAGT
CCAAACCCTATTGAAGTTCAGCTAAATCTTTCTGAATCAGACTTATTAGT
CGTTTTCATTTTCGACTAAAAGATCTGTATCTTTAAATTTCTAAACTGCA
TGAACGATCTAACATGTATATTCCTTCAACCTCTGAGAGACTTTTCAATC
AAAGCTCCTTTTTTTATTTTCTAGTTCGACTTCCCAGCCAACAATGTTCA
ATTGAGATACATGCGNTCTGAGAGACTTTTCAATCAAAGCTCCTTTTCTT
ATTCTCTAGTTCGACTTCCCAGCCAACAATGTTCAATTGAGATACATGCG
CTTGAACAGCATGACTGTCCGACAAAACATCACCTATCACTGCAAGAACT
CACACGCACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001844XLOC_001844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003330-exon-sc0000026-1575043694:316408..316664TCONS_00003330-exon-sc0000026-1575043694:316408..316664Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:313575..313795TCONS_00003330-exon-sc0000026-1575043694:313575..313795Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:312996..313151TCONS_00003330-exon-sc0000026-1575043694:312996..313151Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:312431..312694TCONS_00003330-exon-sc0000026-1575043694:312431..312694Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:311865..312170TCONS_00003330-exon-sc0000026-1575043694:311865..312170Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:311315..311665TCONS_00003330-exon-sc0000026-1575043694:311315..311665Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:310045..311115TCONS_00003330-exon-sc0000026-1575043694:310045..311115Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:309708..309869TCONS_00003330-exon-sc0000026-1575043694:309708..309869Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:309029..309406TCONS_00003330-exon-sc0000026-1575043694:309029..309406Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:307859..308290TCONS_00003330-exon-sc0000026-1575043694:307859..308290Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:307598..307697TCONS_00003330-exon-sc0000026-1575043694:307598..307697Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:307319..307380TCONS_00003330-exon-sc0000026-1575043694:307319..307380Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:306387..307047TCONS_00003330-exon-sc0000026-1575043694:306387..307047Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:305703..305890TCONS_00003330-exon-sc0000026-1575043694:305703..305890Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:305070..305090TCONS_00003330-exon-sc0000026-1575043694:305070..305090Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1575043694:304903..304984TCONS_00003330-exon-sc0000026-1575043694:304903..304984Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:316408..316664TCONS_00003330-exon-sc0000026-1510915933:316408..316664Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:313575..313795TCONS_00003330-exon-sc0000026-1510915933:313575..313795Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:312996..313151TCONS_00003330-exon-sc0000026-1510915933:312996..313151Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:312431..312694TCONS_00003330-exon-sc0000026-1510915933:312431..312694Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:311865..312170TCONS_00003330-exon-sc0000026-1510915933:311865..312170Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:311315..311665TCONS_00003330-exon-sc0000026-1510915933:311315..311665Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:310045..311115TCONS_00003330-exon-sc0000026-1510915933:310045..311115Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:309708..309869TCONS_00003330-exon-sc0000026-1510915933:309708..309869Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:309029..309406TCONS_00003330-exon-sc0000026-1510915933:309029..309406Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:307859..308290TCONS_00003330-exon-sc0000026-1510915933:307859..308290Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:307598..307697TCONS_00003330-exon-sc0000026-1510915933:307598..307697Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:307319..307380TCONS_00003330-exon-sc0000026-1510915933:307319..307380Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:306387..307047TCONS_00003330-exon-sc0000026-1510915933:306387..307047Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:305703..305890TCONS_00003330-exon-sc0000026-1510915933:305703..305890Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:305070..305090TCONS_00003330-exon-sc0000026-1510915933:305070..305090Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1510915933:304903..304984TCONS_00003330-exon-sc0000026-1510915933:304903..304984Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:316408..316664TCONS_00003330-exon-sc0000026-1491911889:316408..316664Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:313575..313795TCONS_00003330-exon-sc0000026-1491911889:313575..313795Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:312996..313151TCONS_00003330-exon-sc0000026-1491911889:312996..313151Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:312431..312694TCONS_00003330-exon-sc0000026-1491911889:312431..312694Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:311865..312170TCONS_00003330-exon-sc0000026-1491911889:311865..312170Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:311315..311665TCONS_00003330-exon-sc0000026-1491911889:311315..311665Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:310045..311115TCONS_00003330-exon-sc0000026-1491911889:310045..311115Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:309708..309869TCONS_00003330-exon-sc0000026-1491911889:309708..309869Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:309029..309406TCONS_00003330-exon-sc0000026-1491911889:309029..309406Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:307859..308290TCONS_00003330-exon-sc0000026-1491911889:307859..308290Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:307598..307697TCONS_00003330-exon-sc0000026-1491911889:307598..307697Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:307319..307380TCONS_00003330-exon-sc0000026-1491911889:307319..307380Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:306387..307047TCONS_00003330-exon-sc0000026-1491911889:306387..307047Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:305703..305890TCONS_00003330-exon-sc0000026-1491911889:305703..305890Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:305070..305090TCONS_00003330-exon-sc0000026-1491911889:305070..305090Clytia hemisphaericaexon
TCONS_00003330-exon-sc0000026-1491911889:304903..304984TCONS_00003330-exon-sc0000026-1491911889:304903..304984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:304903..316664 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.10152	0.172638	0.0876709	4.68179	0.799838	0.0969216	1.23936	0.656725	0.00107776	2.65101	1.15176e-07	0.90561	1.47206e-05	1.3837e-05	1.57725	0.000507234	0	0	0	0	0	0	0	0	0.121533	0.505282
Blast
[Close]
BLAST of TCONS_00003330 vs. Swiss-Prot (Human)
Match: CO2A1 (Collagen alpha-1(II) chain OS=Homo sapiens GN=COL2A1 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 3.437e-29
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 2 
Query: 4280 KETQGTVFSYVLKLDETIQGIEKPDGTKAFPAKTCQDLQMCHPDVETDEYWLDPNGGSSWDKFPARCDFDNKKHETCVPPHKATFDKKEWVTSGT--DKWTWFLRDL------AISDDFDFP-ANNVQLRYMRLNSMTVRQNITYHCKNSHAH 4711
            ++    V + +  L+  I+ I  P+G++  PA+TC+DL++CHP+ ++ +YW+DPN G + D     C+ +    ETCV P+ A   KK W +S +   K  WF   +      +  DD   P   NVQ+ ++RL S    QNITYHCKNS A+
Sbjct: 1249 RQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMET--GETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAY 1399
The following BLAST results are available for this feature:
BLAST of TCONS_00003330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO2A13.437e-2936.60Collagen alpha-1(II) chain OS=Homo sapiens GN=COL2... [more]
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