TCONS_00003311 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003311
Unique Name	TCONS_00003311
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1612

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000026:250472..253453-
coding sequence from alignment at sc0000026:250472..253453-

transcript sequence

>TCONS_00003311 ID=TCONS_00003311|Name=TCONS_00003311|organism=Clytia hemisphaerica|type=transcript|length=1612bp
cgcaatTTAGTACTttggaaggttagaggaatgtaaacattgtcaatttt
atTCTTTCCTTTGCATAGAATGAtatagatatttgaacatgatatcaatg
atagtTTTATTGATCTCTTCTGAAACTccttttttatgatatagaagGGA
GACCTTTTAAAGTCCAAAACATATTTTATGTAATGCTGTAATGCTAAAAA
TTGATTGCAACAGTATGATTATTGAATATTGACTTTTCTTTCAGATAAAT
AAAATAATGTGTAAAGGAAATTGCTATAGATATAAGTGCCTGAATCGATT
TCTaaccttttttaactttttactttTGGTTTTGGGGATAACTATCGCTA
CTTTGCCTGTTTACATCAAAAGTCATGAAATCGtcaaaagctggccaatc
aatGGAGGGATCATTGCAATGGGAGCTTTCATTGGTTTGATCGCACTGGT
TGGTTGTTATGGTTCTCGAAGACAAAACCAAGTCATTCTGTTCTTTTATA
TGATTGTTTTGGCTATAGTTTGTGTCATAACCTTTGCTTTTTCACTGGCT
GCTCTTTCTTTGAGCAAATCTCAACAAAGTCAAGTGTTGTCGAAAGGTTG
GGATAGCATCTCGCCAGACACTAGAAGTGACATTCAGAAGTGGGGCGAAT
GTTGTGGTTTCTTAAATTCGACAAGCATTGATAACCCAAGCTGTtctaaa
CTTGATTGTTTCAAAACAGGCTGTCCCTCATGTCAAGATTACCTGGCAGC
TGATTGGTTCTTACATTTCAGACGAAGTGTTGGAGGAGTATCACTGTTTG
TTTCTATTCTGATGTGTTTGAGTATTTACTTGACAGCCAAATACAGGCAC
ATTAAAAATCCAAGAGCCAACGCTAATGATTACCTGTGATGGATTGGTGC
AAAGTTCTCCTGGTTAGGGTTAACCTGGCAATGCTGAATGCTTTGTCAGG
AGCTGATAGATGCGGTTATGAAATACAAGACAAGAAACCAATTAGGCCGT
TCCACAGAAGAACTGGTGTTTGGCAAATTGAATTATGCTTTCATTGGCAT
GTTGACAAAGGACTGCACACAATATTAGACAGATTTGCTTTGTGCCTTGG
ATTCATTTGTGTTATATGGTACTGATGGACTTTTCACTCTAGATGGCATT
ACTTGTTTTATCGTCATTTTGTTGTGTCTCAAAAAAACGGACAAAGTCTG
TTCTGTATATTTCCAGGCACACTATCTATCTTAGACCATGTTCTagtaat
ctgaaaaaaaaaggatttcttttataaaaatacatacagtgtgtcccaaa
aaaagtggagaatttttatataaagtaaatcctcaaaactcatcATCTTA
ATTGGCCTTAGAATTATTGAAATAAGATTCCaattctctgttcaatcaat
agatattcaatttcctAAGATGATTAAAAAGGTTTTGAGATTAAAATATT
AAAGTATACAAGTCAATTCAACAGTTCAATTTGGCATAAATTATGAGTAT
TTCacattatataaaaatttgtccgctttttttgggacacactgtatatg
ATTTATGTAATGTAATGAGGTTGGAACATTCTTGCGTTGTAAAGGTTTTC
GTATTTGTGCCA

Run BLAST on NCBI

protein sequence of TCONS_00003311-protein

>TCONS_00003311-protein ID=TCONS_00003311-protein|Name=TCONS_00003311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MCKGNCYRYKCLNRFLTFFNFLLLVLGITIATLPVYIKSHEIVKSWPING
GIIAMGAFIGLIALVGCYGSRRQNQVILFFYMIVLAIVCVITFAFSLAAL
SLSKSQQSQVLSKGWDSISPDTRSDIQKWGECCGFLNSTSIDNPSCSKLD
CFKTGCPSCQDYLAADWFLHFRRSVGGVSLFVSILMCLSIYLTAKYRHIK
NPRANANDYL

Run BLAST on NCBI

transcript from alignment at sc0000026:250472..253453-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003311 ID=TCONS_00003311|Name=TCONS_00003311|organism=Clytia hemisphaerica|type=transcript|length=2982bp|location=Sequence derived from alignment at sc0000026:250472..253453- (Clytia hemisphaerica)
CGCAATTTAGTACTTTGGAAGGTTAGAGGAATGTAAACATTGTCAATTTT
ATTCTTTCCTTTGCATAGAATGATATAGATATTTGAACATGATATCAATG
ATAGTTTTATTGATCTCTTCTGAAACTCCTTTTTTATGATATAGAAGGGA
GACCTTTTAAAGTCCAAAACATATTTTATGTAATGCTGTAATGCTAAAAA
TTGATTGCAACAGTATGATTATTGAATATTGACTTTTCTTTCAGATAAAT
AAAATAATGTGTAAAGGAAATTGCTATAGATATAAGTGCCTGAATCGATT
TCTAACCTTTTTTAACTTTTTACTTTTGGTAAGTACAATTTATTTTTATC
TTTTTTTCAATCTGAAATGACTATCAACATTGCTGGCAATGTCATGAAGC
AAGATATCAATGCAAAATATGGAAAATTTCTGACATGCTCAGCCAATCAG
GGGTCTTTCTAAGTTGCCAGGGTCAACTTTGTAAAAGTCTTGCTATGCAA
TTTATTGATGTTGGAATAAGCCTATATCAGCCATTGTGGGTTGGGGTTTT
TGTGGCTTGAAAACGCTTTGCAAGGGTTTTATTAAAATTGATGATGTGAT
CTTCCAGAATGAAAAATGAAAAACAATGGGACATTTTGAAAAAGTTTTTC
AAAGTATACAAAGAAAAAGAATGGTTAAAATTTTAGACTTCTTATAAGGT
AGAAATAACCAATTGAGAAAAGGCTTGAAAAGTAGCAGTACATTAGAAAT
ACCACAAGCTATAAAGAATTATGGATAAAATATTATTCAATGGTGAATGA
ATTTTTAGGTTTTGGGGATAACTATCGCTACTTTGCCTGTTTACATCAAA
AGTCATGAAATCGTCAAAAGCTGGCCAATCAATGGAGGGATCATTGCAAT
GGGAGCTTTCATTGGTTTGATCGCACTGGTTGGTTGTTATGGTTCTCGAA
GACAAAACCAAGTCATTCTGTTCTTTGTATCCTTTTCCATGATCAATGTT
TAAAATTTTTCCATCGCACACTCAGCGTTAAAAGTTAAAAAAGATTCAGT
TTTTCAAAATTTTGCAAGATTCTATAACATTTGAAGAGACCAGGCTGATT
CCTTGATGCTTAATTAAAAGTGGAAATCTGATCAATATTTAATGTCTTGA
GATGTTTATTAAAGATCATAATATACTTTATAATACACCTGTTCATCTTC
TCTTATATATTTATAAAACTTATATTCGATTTGTTTCTCCTTTAGACTGT
TCAAATCTTCAATAAGTTATCAGGCTACTGTTGGATAAGATTTTTTGACA
TAATCATTTAGAATTTTATTTCTTTAACTAACAGTCTTTGATGTTATTAT
AGTATATGATTGTTTTGGCTATAGTTTGTGTCATAACCTTTGCTTTTTCA
CTGGCTGCTCTTTCTTTGAGCAAATCTCAACAAAGTCAAGTGTTGTCGAA
AGGTTGGGATAGCATCTCGCCAGACACTAGAAGTGACATTCAGAAGTGGG
GCGAATGTTGTGGTTTCTTAAATTCGACAAGCATTGATAACCCAAGCTGT
TCTAAAGTATGATTTTTAGTTTCAATTTGCGTAAAAGTGGTATTTCATTT
CATTATTTTACCATCAAGCCTGTTAGATGTCATTTGACTAAAATTCATGA
ATTTTGTAGATATTTTTGTGACAATATGATCTAATTTTCTCTGATCTTTA
AATTTAAATTGAGTTTCTTTAAATCCCTTTTTAGCTTGATTGTTTCAAAA
CAGGCTGTCCCTCATGTCAAGATTACCTGGCAGCTGATTGGTTCTTACAT
TTCAGACGAAGTGTTGGAGGAGTATCACTGTTTGTTTCTATTCTGATGGT
ATGCAGTCTCATCTTTTTTTTTCTTGACAATGATTGAAAATAACATTTTG
GTCTCGTTAACTTGAACCTCTAAAACTCCTTAACTCAAACAAGTTTTCTT
ATCCCTTCAGTTAACAATGGCTTATTAACCTTACTCCATAACTTGAAATT
TCCTTAACTCAAACAAATTTGTCTTCCCTGTACAAGTACGAGTTATGGAG
ACTCCACTGTATATCCAAACAAGAATAATAATAATAATAATAATAATAAT
ACAGTTACATTCATTGATTTAGAGTTTGCAAGAATCATCTCAATGTTGTC
TTTGTTTCATTTTTCCTTTCTTACTATTTTTTAGTGTTTGAGTATTTACT
TGACAGCCAAATACAGGCACATTAAAAATCCAAGAGCCAACGCTAATGAT
TACCTGTGATGGATTGGTGCAAAGTTCTCCTGGTTAGGGTTAACCTGGCA
ATGCTGAATGCTTTGTCAGGAGCTGATAGATGCGGTTATGAAATACAAGA
CAAGAAACCAATTAGGCCGTTCCACAGAAGAACTGGTGTTTGGCAAATTG
AATTATGCTTTCATTGGCATGTTGACAAAGGACTGCACACAATATTAGAC
AGATTTGCTTTGTGCCTTGGATTCATTTGTGTTATATGGTACTGATGGAC
TTTTCACTCTAGATGGCATTACTTGTTTTATCGTCATTTTGTTGTGTCTC
AAAAAAACGGACAAAGTCTGTTCTGTATATTTCCAGGCACACTATCTATC
TTAGACCATGTTCTAGTAATCTGAAAAAAAAAGGATTTCTTTTATAAAAA
TACATACAGTGTGTCCCAAAAAAAGTGGAGAATTTTTATATAAAGTAAAT
CCTCAAAACTCATCATCTTAATTGGCCTTAGAATTATTGAAATAAGATTC
CAATTCTCTGTTCAATCAATAGATATTCAATTTCCTAAGATGATTAAAAA
GGTTTTGAGATTAAAATATTAAAGTATACAAGTCAATTCAACAGTTCAAT
TTGGCATAAATTATGAGTATTTCACATTATATAAAAATTTGTCCGCTTTT
TTTGGGACACACTGTATATGATTTATGTAATGTAATGAGGTTGGAACATT
CTTGCGTTGTAAAGGTTTTCGTATTTGTGCCA

Coding sequence (CDS) from alignment at sc0000026:250472..253453-

>TCONS_00003311 ID=TCONS_00003311|Name=TCONS_00003311|organism=Clytia hemisphaerica|type=CDS|length=3165bp|location=Sequence derived from alignment at sc0000026:250472..253453- (Clytia hemisphaerica)
TGTTTGAGTATTTACTTGACAGCCAAATACAGGCACATTAAAAATCCAAG
AGCCAACGCTAATGATTACCTGTGACTTGATTGTTTCAAAACAGGCTGTC
CCTCATGTCAAGATTACCTGGCAGCTGATTGGTTCTTACATTTCAGACGA
AGTGTTGGAGGAGTATCACTGTTTGTTTCTATTCTGATGTATATGATTGT
TTTGGCTATAGTTTGTGTCATAACCTTTGCTTTTTCACTGGCTGCTCTTT
CTTTGAGCAAATCTCAACAAAGTCAAGTGTTGTCGAAAGGTTGGGATAGC
ATCTCGCCAGACACTAGAAGTGACATTCAGAAGTGGGGCGAATGTTGTGG
TTTCTTAAATTCGACAAGCATTGATAACCCAAGCTGTTCTAAAGTTTTGG
GGATAACTATCGCTACTTTGCCTGTTTACATCAAAAGTCATGAAATCGTC
AAAAGCTGGCCAATCAATGGAGGGATCATTGCAATGGGAGCTTTCATTGG
TTTGATCGCACTGGTTGGTTGTTATGGTTCTCGAAGACAAAACCAAGTCA
TTCTGTTCTTTATGTGTAAAGGAAATTGCTATAGATATAAGTGCCTGAAT
CGATTTCTAACCTTTTTTAACTTTTTACTTTTGTGTTTGAGTATTTACTT
GACAGCCAAATACAGGCACATTAAAAATCCAAGAGCCAACGCTAATGATT
ACCTGTGACTTGATTGTTTCAAAACAGGCTGTCCCTCATGTCAAGATTAC
CTGGCAGCTGATTGGTTCTTACATTTCAGACGAAGTGTTGGAGGAGTATC
ACTGTTTGTTTCTATTCTGATGTATATGATTGTTTTGGCTATAGTTTGTG
TCATAACCTTTGCTTTTTCACTGGCTGCTCTTTCTTTGAGCAAATCTCAA
CAAAGTCAAGTGTTGTCGAAAGGTTGGGATAGCATCTCGCCAGACACTAG
AAGTGACATTCAGAAGTGGGGCGAATGTTGTGGTTTCTTAAATTCGACAA
GCATTGATAACCCAAGCTGTTCTAAAGTTTTGGGGATAACTATCGCTACT
TTGCCTGTTTACATCAAAAGTCATGAAATCGTCAAAAGCTGGCCAATCAA
TGGAGGGATCATTGCAATGGGAGCTTTCATTGGTTTGATCGCACTGGTTG
GTTGTTATGGTTCTCGAAGACAAAACCAAGTCATTCTGTTCTTTATGTGT
AAAGGAAATTGCTATAGATATAAGTGCCTGAATCGATTTCTAACCTTTTT
TAACTTTTTACTTTTGTGTTTGAGTATTTACTTGACAGCCAAATACAGGC
ACATTAAAAATCCAAGAGCCAACGCTAATGATTACCTGTGACTTGATTGT
TTCAAAACAGGCTGTCCCTCATGTCAAGATTACCTGGCAGCTGATTGGTT
CTTACATTTCAGACGAAGTGTTGGAGGAGTATCACTGTTTGTTTCTATTC
TGATGTATATGATTGTTTTGGCTATAGTTTGTGTCATAACCTTTGCTTTT
TCACTGGCTGCTCTTTCTTTGAGCAAATCTCAACAAAGTCAAGTGTTGTC
GAAAGGTTGGGATAGCATCTCGCCAGACACTAGAAGTGACATTCAGAAGT
GGGGCGAATGTTGTGGTTTCTTAAATTCGACAAGCATTGATAACCCAAGC
TGTTCTAAAGTTTTGGGGATAACTATCGCTACTTTGCCTGTTTACATCAA
AAGTCATGAAATCGTCAAAAGCTGGCCAATCAATGGAGGGATCATTGCAA
TGGGAGCTTTCATTGGTTTGATCGCACTGGTTGGTTGTTATGGTTCTCGA
AGACAAAACCAAGTCATTCTGTTCTTTATGTGTAAAGGAAATTGCTATAG
ATATAAGTGCCTGAATCGATTTCTAACCTTTTTTAACTTTTTACTTTTGT
GTTTGAGTATTTACTTGACAGCCAAATACAGGCACATTAAAAATCCAAGA
GCCAACGCTAATGATTACCTGTGACTTGATTGTTTCAAAACAGGCTGTCC
CTCATGTCAAGATTACCTGGCAGCTGATTGGTTCTTACATTTCAGACGAA
GTGTTGGAGGAGTATCACTGTTTGTTTCTATTCTGATGTATATGATTGTT
TTGGCTATAGTTTGTGTCATAACCTTTGCTTTTTCACTGGCTGCTCTTTC
TTTGAGCAAATCTCAACAAAGTCAAGTGTTGTCGAAAGGTTGGGATAGCA
TCTCGCCAGACACTAGAAGTGACATTCAGAAGTGGGGCGAATGTTGTGGT
TTCTTAAATTCGACAAGCATTGATAACCCAAGCTGTTCTAAAGTTTTGGG
GATAACTATCGCTACTTTGCCTGTTTACATCAAAAGTCATGAAATCGTCA
AAAGCTGGCCAATCAATGGAGGGATCATTGCAATGGGAGCTTTCATTGGT
TTGATCGCACTGGTTGGTTGTTATGGTTCTCGAAGACAAAACCAAGTCAT
TCTGTTCTTTATGTGTAAAGGAAATTGCTATAGATATAAGTGCCTGAATC
GATTTCTAACCTTTTTTAACTTTTTACTTTTGTGTTTGAGTATTTACTTG
ACAGCCAAATACAGGCACATTAAAAATCCAAGAGCCAACGCTAATGATTA
CCTGTGACTTGATTGTTTCAAAACAGGCTGTCCCTCATGTCAAGATTACC
TGGCAGCTGATTGGTTCTTACATTTCAGACGAAGTGTTGGAGGAGTATCA
CTGTTTGTTTCTATTCTGATGTATATGATTGTTTTGGCTATAGTTTGTGT
CATAACCTTTGCTTTTTCACTGGCTGCTCTTTCTTTGAGCAAATCTCAAC
AAAGTCAAGTGTTGTCGAAAGGTTGGGATAGCATCTCGCCAGACACTAGA
AGTGACATTCAGAAGTGGGGCGAATGTTGTGGTTTCTTAAATTCGACAAG
CATTGATAACCCAAGCTGTTCTAAAGTTTTGGGGATAACTATCGCTACTT
TGCCTGTTTACATCAAAAGTCATGAAATCGTCAAAAGCTGGCCAATCAAT
GGAGGGATCATTGCAATGGGAGCTTTCATTGGTTTGATCGCACTGGTTGG
TTGTTATGGTTCTCGAAGACAAAACCAAGTCATTCTGTTCTTTATGTGTA
AAGGAAATTGCTATAGATATAAGTGCCTGAATCGATTTCTAACCTTTTTT
AACTTTTTACTTTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001841	XLOC_001841	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003311-protein	TCONS_00003311-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000026	supercontig	sc0000026:250472..253453 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.1493	11.1951	3.34986	1.9888	13.2312	10.4285	14.2721	14.8527	14.1278	14.1739	11.6823	9.0268	10.9315	8.42765	9.21837	9.33799	13.2501	12.3162	6.88146	9.47938	11.2954	10.697	29.7185	25.1996	9.69241	10.2737	12.1358	8.28902	21.4991	23.3625

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000301	Tetraspanin
IPR018499	Tetraspanin/Peripherin

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Blast

[Close]

BLAST of TCONS_00003311 vs. Swiss-Prot (Human)
Match: TSN31 (Tetraspanin-31 OS=Homo sapiens GN=TSPAN31 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.643e-21
Identity = 64/180 (35.56%), Postives = 108/180 (60.00%), Query Frame = 2

Query:  368 KSHEIVKSWPINGGIIAMGAFIGLIALVGCYGSRRQNQVILFFYMIVLAIVCVITFAFXXXXXXXXXXXXXXXXXXGWDSISPDTRSDIQKWGECCGFLNSTSI---DNPSCSKLDCFKTGCPSCQDYLAADWFLHFR----RSVGGVSLFVSILMCLSIYLTAKYRHIKNPRANANDYL 886
            K   +V S  I GG+IA+G F+ LIA+ G  G+   +QV+LFFYMI+L +V +  F  S + L++++S+Q+ V++  W  +S  TR ++++  +CCG  N T++   D   C+ + C K+  P+CQ  +  + FL       + +GGV LF S    L ++L  ++R+ K+PRAN + +L
Sbjct:   35 KGLGLVSSIHIIGGVIAVGVFLLLIAVAGLVGAVNHHQVLLFFYMIILGLVFIFQFVISCSCLAINRSKQTDVINASWWVMSNKTRDELERSFDCCGLFNLTTLYQQDYDFCTAI-C-KSQSPTCQ--MCGEKFLKHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL 210

The following BLAST results are available for this feature:

BLAST of TCONS_00003311 vs. Swiss-Prot (Human)

BLAST of TCONS_00003311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TSN31	9.643e-21	35.56	Tetraspanin-31 OS=Homo sapiens GN=TSPAN31 PE=2 SV=...	[more]

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TCONS_00003311 (transcript) - C. hemisphaerica