TCONS_00003309 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003309
Unique Name	TCONS_00003309
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2663

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000026:206650..209312-

transcript sequence

>TCONS_00003309 ID=TCONS_00003309|Name=TCONS_00003309|organism=Clytia hemisphaerica|type=transcript|length=2663bp
GCAGGATATTTTTTGATATCACTTACATCTAAATGTAAAAATATATCACC
CTGGGGACGAGGTTGCAAGCAGAGATAAACCTTGACCAAAAAAAACATCC
AAGTTTGACCGTTGTATAATTATAACAATAATTTATATcatgaaagaaaa
acttttactacaaaatatatataaaaaccACTCTATGATAAATGGGATAT
AGTTGTATAGGATACGGTAGAAAATTCAaattatcgaaacaaaatatTAT
ACGTCAATTTTCATTATCCTCTTTCCATTCTTTTagtatttttcaaacat
tttggcATTCGGAGCTTATACTGTCCCAGGCTGATAAATCGAATTGTCTT
TTTGAACAATAACTTTATAATTCAGTTACTCGGAGGTCATTTCCATTCCT
TTGCAAAACTCTCCATGAAACTTCAACTGTATATATAAATAACTCTGTTT
TGTTTATCGTTCAATTCCAAAATAAGTGTCGTTATCCATAAGGAAACACC
TCTGTCTCATATCCACAATCAGAGATATCCAAAAAGGAGATATTAACCAA
TTCACAAAGACGATTGATTTGCACAACCCAGtgtatttatcaatttttca
aggCTTACTGGTGGTGCCAGGTAGAATTCTCTGACGCCATGGCGAGGTTG
AGATTCACCATCAGATGTCCATACCCAGTTGAGAGCAACAGAACCACCAA
CAGCAACGCTGGTATCAATCAATCGTTGACAGTAACCACTTTCAAAGTTT
CATCACCACTCAACACCTGTTCATCAGCGCTGGACTCATCTGGTGATGTA
GGGTTTGATGCAGTCGATATACGTCTTGGTTTGTGGAAATCGGGCGCCAA
AAAACCTGAATACAGAACATCTCCTTCTCCTTCGTCCTCGTCATTTTCTT
CAGGTAAGCTTAGGTTCTTCTGCGTCGCAATCACCAGGCGAATCTCTTTA
ATCTCCTGCCGAAATTCCTGTAAACTTTCTTGAATATGTTTCAAATAAGA
TAAAGTCTCCGTATGGCAAAGCGCGTTCTTCTCCATGATGTCTTGAACAT
TGACGAACGGATATCGAACATTTTTGAAATGCTTGATGGAGTTGAATAAt
ttgactttcaaaacaaaacgaaTTGCTTCTTTATATTGCTTATTCAAGAG
GCTGGATAAAGCCATTTCAGGTTGACTGCTCTTTTTACGGGACATGTGAC
TGATTTTGCGTATACGGTTGTTAAGGGAAGTTCGTCTATGATGCGCGAGA
TCGTTGTTGTTCTTGATACTTTCCAGTGTGGAGCCGACAGATCCATTAAT
AGGTCGACCCTGGCGTTTCTTAGATCGTTTGAAGAAGCTCTTGACTTTAT
CCTTAGTGGTTTCCGTTTCGATCTCATCAAAGTGAAAGCCAGCAAAGACA
TCTGTTTTGAAGATATTCTGAACGCCTGGCAAATGTTCATAATACTCAGG
TCGATTCGTGCGACCCAAGATCTGTGGGAAAAAGTAATGCCACGTTGCTT
GGAGCTGATACTTCTTTGGCATGACGGAGTaatttctccaaaaagtttGG
AGGACAACGGCAGCTGGGTTACGAACCTTGATGTAAcgtttttgcttctt
ttgtttAGCGACTTGTAGAGCAAAGCCTGAGCCAAGAATACCGGCCGGTA
AAGCGAAGAAAGCACAACCTACCAACGCAAAAACACCTGTAATAATCTTT
CCGGCCCACGTTTCCGGGCTAATATCGCCGTAACCTACGGACGTAACAGT
AATCATAGCCCAATATAAACCANGTTTCCGGGCTAATATCACCGTAACCT
ACGGACGTAACAGTAATCATAGCCCAATATAAACCATTAGCCATATTGTC
AATCGTACTAGCCTCTGCGCCCACTTTCTCGATGATATAGATCAAATAAG
TTCCACCAAACAAGATGATAAAGCCAACAAAGTAACACGTGACTAGTTCC
TTTCTATGCTTGTACACAACTTTGCCCATGGTTCGAATATCACCACGCTG
GCGATCGAGTCTCAGGATGCGGAAGATTTGGAGGAATCTGGTGATTCGCA
GAATGGTGAAATAAGCTGTTTTGACACTGAGGATAGCTGTGGTGAGAGTG
GAGATTATAACAAATGCATCGATCATCATATAGAGAGATTTCATGAAACG
TAGCTTTCCCAGAATGCCTTTGTATTTGCCAAGGAAGCTACACGACCACA
CTCGCAGTAAATATTCAACAGTGAACCAGGAGAGTAAAGAGATTTCGTAA
TAAAATATCAAGTCTATTAAAGTATCATTGTTTTCATATGTTTGAATAGT
GGATAGAATACTCGTGATTATACTTCCAACGATAAGTATCAAGTTTACTA
AATGGTAAATGATGGCCACTTTGTTTTCTGGACGTTCTAAGAAATAATAA
ACTTTTTTGCGCCATGATTCATATTTTCGTTGCCGTGAAGTTGGCTCGAC
TTCTTCGCTCGATTTATCGACAAGTTTGTTATCAAGACCATAGACAGCAG
CTGAAGGTCTTCGTTTTCCTGGTAACGGCGTTGAGAGTGGAGTTAGTTCC
ATTATTCTCTCACTTGATTTCCTTCCCTTCTATGAACTATTTTTCACATA
TCTTtataatttgctataaaataaattgtaaaatgttcatATATCGTCAA
AGCTTTCTGTAAT

Run BLAST on NCBI

transcript from alignment at sc0000026:206650..209312-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003309 ID=TCONS_00003309|Name=TCONS_00003309|organism=Clytia hemisphaerica|type=transcript|length=2663bp|location=Sequence derived from alignment at sc0000026:206650..209312- (Clytia hemisphaerica)
GCAGGATATTTTTTGATATCACTTACATCTAAATGTAAAAATATATCACC
CTGGGGACGAGGTTGCAAGCAGAGATAAACCTTGACCAAAAAAAACATCC
AAGTTTGACCGTTGTATAATTATAACAATAATTTATATCATGAAAGAAAA
ACTTTTACTACAAAATATATATAAAAACCACTCTATGATAAATGGGATAT
AGTTGTATAGGATACGGTAGAAAATTCAAATTATCGAAACAAAATATTAT
ACGTCAATTTTCATTATCCTCTTTCCATTCTTTTAGTATTTTTCAAACAT
TTTGGCATTCGGAGCTTATACTGTCCCAGGCTGATAAATCGAATTGTCTT
TTTGAACAATAACTTTATAATTCAGTTACTCGGAGGTCATTTCCATTCCT
TTGCAAAACTCTCCATGAAACTTCAACTGTATATATAAATAACTCTGTTT
TGTTTATCGTTCAATTCCAAAATAAGTGTCGTTATCCATAAGGAAACACC
TCTGTCTCATATCCACAATCAGAGATATCCAAAAAGGAGATATTAACCAA
TTCACAAAGACGATTGATTTGCACAACCCAGTGTATTTATCAATTTTTCA
AGGCTTACTGGTGGTGCCAGGTAGAATTCTCTGACGCCATGGCGAGGTTG
AGATTCACCATCAGATGTCCATACCCAGTTGAGAGCAACAGAACCACCAA
CAGCAACGCTGGTATCAATCAATCGTTGACAGTAACCACTTTCAAAGTTT
CATCACCACTCAACACCTGTTCATCAGCGCTGGACTCATCTGGTGATGTA
GGGTTTGATGCAGTCGATATACGTCTTGGTTTGTGGAAATCGGGCGCCAA
AAAACCTGAATACAGAACATCTCCTTCTCCTTCGTCCTCGTCATTTTCTT
CAGGTAAGCTTAGGTTCTTCTGCGTCGCAATCACCAGGCGAATCTCTTTA
ATCTCCTGCCGAAATTCCTGTAAACTTTCTTGAATATGTTTCAAATAAGA
TAAAGTCTCCGTATGGCAAAGCGCGTTCTTCTCCATGATGTCTTGAACAT
TGACGAACGGATATCGAACATTTTTGAAATGCTTGATGGAGTTGAATAAT
TTGACTTTCAAAACAAAACGAATTGCTTCTTTATATTGCTTATTCAAGAG
GCTGGATAAAGCCATTTCAGGTTGACTGCTCTTTTTACGGGACATGTGAC
TGATTTTGCGTATACGGTTGTTAAGGGAAGTTCGTCTATGATGCGCGAGA
TCGTTGTTGTTCTTGATACTTTCCAGTGTGGAGCCGACAGATCCATTAAT
AGGTCGACCCTGGCGTTTCTTAGATCGTTTGAAGAAGCTCTTGACTTTAT
CCTTAGTGGTTTCCGTTTCGATCTCATCAAAGTGAAAGCCAGCAAAGACA
TCTGTTTTGAAGATATTCTGAACGCCTGGCAAATGTTCATAATACTCAGG
TCGATTCGTGCGACCCAAGATCTGTGGGAAAAAGTAATGCCACGTTGCTT
GGAGCTGATACTTCTTTGGCATGACGGAGTAATTTCTCCAAAAAGTTTGG
AGGACAACGGCAGCTGGGTTACGAACCTTGATGTAACGTTTTTGCTTCTT
TTGTTTAGCGACTTGTAGAGCAAAGCCTGAGCCAAGAATACCGGCCGGTA
AAGCGAAGAAAGCACAACCTACCAACGCAAAAACACCTGTAATAATCTTT
CCGGCCCACGTTTCCGGGCTAATATCGCCGTAACCTACGGACGTAACAGT
AATCATAGCCCAATATAAACCANGTTTCCGGGCTAATATCACCGTAACCT
ACGGACGTAACAGTAATCATAGCCCAATATAAACCATTAGCCATATTGTC
AATCGTACTAGCCTCTGCGCCCACTTTCTCGATGATATAGATCAAATAAG
TTCCACCAAACAAGATGATAAAGCCAACAAAGTAACACGTGACTAGTTCC
TTTCTATGCTTGTACACAACTTTGCCCATGGTTCGAATATCACCACGCTG
GCGATCGAGTCTCAGGATGCGGAAGATTTGGAGGAATCTGGTGATTCGCA
GAATGGTGAAATAAGCTGTTTTGACACTGAGGATAGCTGTGGTGAGAGTG
GAGATTATAACAAATGCATCGATCATCATATAGAGAGATTTCATGAAACG
TAGCTTTCCCAGAATGCCTTTGTATTTGCCAAGGAAGCTACACGACCACA
CTCGCAGTAAATATTCAACAGTGAACCAGGAGAGTAAAGAGATTTCGTAA
TAAAATATCAAGTCTATTAAAGTATCATTGTTTTCATATGTTTGAATAGT
GGATAGAATACTCGTGATTATACTTCCAACGATAAGTATCAAGTTTACTA
AATGGTAAATGATGGCCACTTTGTTTTCTGGACGTTCTAAGAAATAATAA
ACTTTTTTGCGCCATGATTCATATTTTCGTTGCCGTGAAGTTGGCTCGAC
TTCTTCGCTCGATTTATCGACAAGTTTGTTATCAAGACCATAGACAGCAG
CTGAAGGTCTTCGTTTTCCTGGTAACGGCGTTGAGAGTGGAGTTAGTTCC
ATTATTCTCTCACTTGATTTCCTTCCCTTCTATGAACTATTTTTCACATA
TCTTTATAATTTGCTATAAAATAAATTGTAAAATGTTCATATATCGTCAA
AGCTTTCTGTAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001838	XLOC_001838	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003309-exon-sc0000026-1575043694:206650..209312	TCONS_00003309-exon-sc0000026-1575043694:206650..209312	Clytia hemisphaerica	exon
TCONS_00003309-exon-sc0000026-1510915933:206650..209312	TCONS_00003309-exon-sc0000026-1510915933:206650..209312	Clytia hemisphaerica	exon
TCONS_00003309-exon-sc0000026-1491911889:206650..209312	TCONS_00003309-exon-sc0000026-1491911889:206650..209312	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000026	supercontig	sc0000026:206650..209312 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0805996	0.0422939	0.127612	0.112102	0.0374312	0.0462185	0	0	0	0.0754514	0.12059	0.00962835	0.0288449	0	0.122137	0.0264293	23.581	46.1868	0.0252757	0	33.8177	35.4463	1.99865	2.57984	4.86346	6.36021	30.817	16.4342	0.108346	0

Blast

[Close]

BLAST of TCONS_00003309 vs. Swiss-Prot (Human)
Match: KCNQ1 (Potassium voltage-gated channel subfamily KQT member 1 OS=Homo sapiens GN=KCNQ1 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 8.191e-33
Identity = 82/226 (36.28%), Postives = 131/226 (57.96%), Query Frame = -1

Query: 1743 KVYYFLERPENKVAIIYHLVNXXXXXXXXXXXXXXXXXTYENNDTLIDLIFYYEISLLSWFTVEYLLRVWSCSFLGKYKGILGKLRFMKSLYMMIDAFVIISTLTTAILSVKTAYF--TILRITRFLQIFRILRLDRQRGDIRTMGKVVYKHRKELVTCYFVGFIILFGGTYLIYIIEKVGAEAS---TIDNMANGLYWAMITVTSVGYGDISPETWFILGYDYCY 2405
            +VY FLERP      +YH    ++++  +I S+LSTI+ Y    T    +F+ EI L+ +F  EY++R+WS     KY G+ G+LRF +    +ID  V+++++    +  K   F  + +R  RFLQI R+L +DRQ G  R +G VV+ HR+EL+T  ++GF+ L   +Y +Y+ EK     S      + A+ L+W ++TVT++GYGD  P+TW       C+
Sbjct:  109 RVYNFLERPTGWKCFVYHFAVFLIVLVCLIFSVLSTIEQYAALAT--GTLFWMEIVLVVFFGTEYVVRLWSAGCRSKYVGLWGRLRFARKPISIIDLIVVVASMVVLCVGSKGQVFATSAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDAVNESGRVEFGSYADALWWGVVTVTTIGYGDKVPQTWVGKTIASCF 332

HSP 2 Score: 95.5153 bits (236), Expect = 4.678e-20
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = -2

Query: 1526 LYWAMITVTSVGYGDISPETWAGKIITGVFALVGCAFFALPAGILGSGFALQVAKQKKQKRYIKVRNPAAVVLQTFWRNYS 1768
            L+W ++TVT++GYGD  P+TW GK I   F++   +FFALPAGILGSGFAL+V ++++QK + +    AA ++QT WR Y+
Sbjct:  303 LWWGVVTVTTIGYGDKVPQTWVGKTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQKHFNRQIPAAASLIQTAWRCYA 383

The following BLAST results are available for this feature:

BLAST of TCONS_00003309 vs. Swiss-Prot (Human)

BLAST of TCONS_00003309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KCNQ1	8.191e-33	36.28	Potassium voltage-gated channel subfamily KQT memb...	[more]

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TCONS_00003309 (transcript) - C. hemisphaerica