TCONS_00003308 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003308
Unique Name	TCONS_00003308
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	234

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000026:200947..201438-

transcript sequence

>TCONS_00003308 ID=TCONS_00003308|Name=TCONS_00003308|organism=Clytia hemisphaerica|type=transcript|length=234bp
CCGCATCTTCACAGTATAAAAAGAGTTGCACATTTCGTTGGAAATCATCT
TGCATTTTGAAGACCATTTAACAAAGCTTCAAAAAGAAgacaacaaaaaa
atgaaggCCATCATTTTCATCACTCTCGTAGCAGCTGCCTACTCCCTCGA
AGTTGGAACCCAAACTGGTACCACACCACCTGCTGTCCCATGCCCAGACT
CCCTCTGCAAAGGAAAATCTGACGGAAACTTCNN

Run BLAST on NCBI

transcript from alignment at sc0000026:200947..201438-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003308 ID=TCONS_00003308|Name=TCONS_00003308|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0000026:200947..201438- (Clytia hemisphaerica)
CCGCATCTTCACAGTATAAAAAGAGTTGCACATTTCGTTGGAAATCATCT
TGCATTTTGAAGACCATTTAACAAAGCTTCAAAAAGAAGACAACAAAAAA
ATGAAGGCCATCATTTTCATCACTCTCGTAGCAGGTAAGAAATCTTTCTT
CATTATTCAGTCGAAAAACTATGTATAAAGCCAAAAGCCTAAATAGGACT
TCTTGACAGTGCTGCAACATTTTATCCAAAAATATTGCGAAAAATCTAAG
CACACATTTGAAATCAGTAAGGTTTAAGTAAACGTGTATAAATTTTTAAT
TTAGCGTAACGTATGCTGGAAAATTATGAAAATAGTGTCCACATACTTTT
AAGACAGACTCCAATATGCAAATGTTCTCATTTTTATTCTAGCTGCCTAC
TCCCTCGAAGTTGGAACCCAAACTGGTACCACACCACCTGCTGTCCCATG
CCCAGACTCCCTCTGCAAAGGAAAATCTGACGGAAACTTCNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001839	XLOC_001839	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003308-exon-sc0000026-1575043694:201305..201438	TCONS_00003308-exon-sc0000026-1575043694:201305..201438	Clytia hemisphaerica	exon
TCONS_00003308-exon-sc0000026-1575043694:200947..201046	TCONS_00003308-exon-sc0000026-1575043694:200947..201046	Clytia hemisphaerica	exon
TCONS_00003308-exon-sc0000026-1510915933:201305..201438	TCONS_00003308-exon-sc0000026-1510915933:201305..201438	Clytia hemisphaerica	exon
TCONS_00003308-exon-sc0000026-1510915933:200947..201046	TCONS_00003308-exon-sc0000026-1510915933:200947..201046	Clytia hemisphaerica	exon
TCONS_00003308-exon-sc0000026-1491911889:201305..201438	TCONS_00003308-exon-sc0000026-1491911889:201305..201438	Clytia hemisphaerica	exon
TCONS_00003308-exon-sc0000026-1491911889:200947..201046	TCONS_00003308-exon-sc0000026-1491911889:200947..201046	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000026	supercontig	sc0000026:200947..201438 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.2736	0	0	0	0	0	5.017	14.9393	852.092	184.976	20.4852	1.16279	0	1.10195	0	0	0	0	0	0	0	1.44966	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00003308 vs. Swiss-Prot (Human)

BLAST of TCONS_00003308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00003308 (transcript) - C. hemisphaerica