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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003307 ID=TCONS_00003307|Name=TCONS_00003307|organism=Clytia hemisphaerica|type=transcript|length=2538bp
CTTTTTTGTATCTATTGATTAATCAGTAAGTTAATGgattctttttaaaa
taaagattttgttcagctttttttcggacacacAGAGTAACATAGAATAA
ATACGCTTGGTACACACAAAATAATTAAAGTGCAATCGACTCTTTCAGTG
TCCTGGGGTAGCAAGTACAACATTTAAGGAGCATCACTTGAAAGGTTGGA
ATTAGGTTGTTTTGCTTGGAACGATCGACCTGTCCTGTTTTTTATGCGGT
ATTAACGCCGTCCTTTGAAGATGATGACTGTTGGAATAGCGATTGCCGTT
AGAGTGATTCACACTGATTGACTTTTGAAGTAACTTTTAGGGTTGATACC
TTTTCGGGAGAAGAAATTTGGGCAATAATTTcacgaaaaatgttttctta
attttcatttgctttaaCGAAAAGTTTGTTTCAGACTTTTCAGACAAAGC
TGAATCTACAAAATTTAATTCCAGCGATAATATAtggaaaaaattctctt
ttcacAAATTTGCCGATTCACGAAAGTTTCTTCTCGCGATAGTTTTCCCC
TACAGTATTAAAAACCTTGGCACGGAGTGtccaaagaaatatttcaatcG
CAGGAAAAAAACGACTATAAAATATCACTGTCAAAATAATTAGCTTTGTT
ATCAATACCAGGGGAGTCACGGTCTTCGACTGCTTTAATTGTGTTCACAA
TGTCCCCGTTTGGTTCAATATGGTTCTCCTCGTCACCATCGTCTTCATCG
TCAATTTCATTCTTAACATCTTCAAGTGTTGGAAATGGTGCTTCTTCTTT
GGTTGAGGCTGTCGTTGTTGAATTATCACTGAAAGTGACAAATTGCGCTT
GAATGTGAAAAATATCGGTATTGGATCTCTTTCGGAGACTTGAGGTGCTC
GTTTTTCTGCTGCTATGGTTACCAAGTTCCGGAGGAACGTTATCGATCAA
CGTACGAATTTCCTGGATTTCGTCTCGAAACTCGTGCAAACTTTCTTGGA
TGTGTTTCAAATAAGATAAAGTCTCCGTATGGCAAAGCGCATTCTTCTCC
ATGATGTCTTGAACATTGACGAACGGATATCgaacatttttgaagatttt
aatgGATTGGAATAATTTCACTTTGACCACAAAACGAATGGCTTCTTTAT
ATTGCTTATTAAGCAAGCTAGACATCGGCATAACGTTAGAGCTCTTCTTA
CGTTTCTCCGCTTTGCTACTCGTACGTAATTTCAATCGATGTAAACGTCG
GTCTTCTTCTCGCTCTTCTTGACTCGTTGTCCCATTACTGAAAGGTTTGG
TCATGCTTCTCTTCATCTTCTTGAAAGAGAATCCTTTCTTTTTACCCTCC
TCATCAGTTTCAACCACCATCCTGTTCGGGTAAACACTCGACTTCATGAT
CTCTTGAACACCGGGTAAGATCTTGTAATACTCAGGGGTGTTATTTTTCC
CCAAGATTTGCGGGAAGAAGAAAAACCAAGTGCCTTGTAGTTGATAGTTA
CGTGGACGTACGGCGTAGTTTCGCCAAAAAGTTTGTAGAACAACGGCAGC
CGGGTTACGTACTTTGAGGAAGCGAcgttgtttcttttgtttagcgACTT
GTAGAGCGAAACCTGAGCCAAGAATACCGGCCGGTAAAGCGAAGAAAGCG
CACCCTACCAACGCAAAAACGCCGGTCAATAGCTTTCCAGCCCAGGTTTC
CGGGCTAATATCGCCGTAACCTACGGATGTAACAGTAATCATAGCCCAAT
ATAATCCATTAGCCATATTGTCAATCGTACTAGCCTCTGCACCTGATTTC
TCGATGATATATATCAAATAAGTTCCACCAAACAAGATGATAAAGCCAAC
AAAGTAACACGTAACTAGTTCCTTTCTATGCTTGTACACAACACGACCCA
TAGTGCGTAGATCACCTCTTTGCCGATCCAAACGTAAAATACGAAATATC
TGTAAGAACCTCGTAATACGTAGGATAGTAAAGTAAGCAGTTTTGATACT
CAGTAAGGCCGTCGTTAGCGTGGACACAATAACAAAGAGATCAATCATCA
TATATAATGTCCTCATGAAGCGAAATTTGCCGGCATAACCTTTATATTTG
CCAAGAAAGCTGCATGACCAAAGGCGCGCCAAATACTCAACAATAAACCA
CGATAGCAGTGACAATTCATAATACAAAATCAAatcttttagaatttcat
tatCTTCGTACGATTGGATAGTGGATAAAATACTCGTCACTATACTTCCA
ACGATAAGTAGAAGGTTCAGTAAATGGTAACAGATGGCTATTTTGGTTTC
CGGTCGCTCCAGAAAGTAGTAGACAATCTTACGAAGATCTTTGTAACGTG
ATTTCGCATCCATTGACGTTGCCTCCATCAGACTTGCAAGCTCTGTATCC
GTACTGCCGGTTAgacttttctttttgttatgtGCCATTTTTTCTTTATG
GTTGTTTTTATACAACCCCCAGAATTTTTTCTTCTAAAGCCTAAAAGTCT
ACTCTAAAATGTctaattttgttgatgtttttttcact Run BLAST on NCBI transcript from alignment at sc0000026:196239..198776- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003307 ID=TCONS_00003307|Name=TCONS_00003307|organism=Clytia hemisphaerica|type=transcript|length=2538bp|location=Sequence derived from alignment at sc0000026:196239..198776- (Clytia hemisphaerica)
CTTTTTTGTATCTATTGATTAATCAGTAAGTTAATGGATTCTTTTTAAAA
TAAAGATTTTGTTCAGCTTTTTTTCGGACACACAGAGTAACATAGAATAA
ATACGCTTGGTACACACAAAATAATTAAAGTGCAATCGACTCTTTCAGTG
TCCTGGGGTAGCAAGTACAACATTTAAGGAGCATCACTTGAAAGGTTGGA
ATTAGGTTGTTTTGCTTGGAACGATCGACCTGTCCTGTTTTTTATGCGGT
ATTAACGCCGTCCTTTGAAGATGATGACTGTTGGAATAGCGATTGCCGTT
AGAGTGATTCACACTGATTGACTTTTGAAGTAACTTTTAGGGTTGATACC
TTTTCGGGAGAAGAAATTTGGGCAATAATTTCACGAAAAATGTTTTCTTA
ATTTTCATTTGCTTTAACGAAAAGTTTGTTTCAGACTTTTCAGACAAAGC
TGAATCTACAAAATTTAATTCCAGCGATAATATATGGAAAAAATTCTCTT
TTCACAAATTTGCCGATTCACGAAAGTTTCTTCTCGCGATAGTTTTCCCC
TACAGTATTAAAAACCTTGGCACGGAGTGTCCAAAGAAATATTTCAATCG
CAGGAAAAAAACGACTATAAAATATCACTGTCAAAATAATTAGCTTTGTT
ATCAATACCAGGGGAGTCACGGTCTTCGACTGCTTTAATTGTGTTCACAA
TGTCCCCGTTTGGTTCAATATGGTTCTCCTCGTCACCATCGTCTTCATCG
TCAATTTCATTCTTAACATCTTCAAGTGTTGGAAATGGTGCTTCTTCTTT
GGTTGAGGCTGTCGTTGTTGAATTATCACTGAAAGTGACAAATTGCGCTT
GAATGTGAAAAATATCGGTATTGGATCTCTTTCGGAGACTTGAGGTGCTC
GTTTTTCTGCTGCTATGGTTACCAAGTTCCGGAGGAACGTTATCGATCAA
CGTACGAATTTCCTGGATTTCGTCTCGAAACTCGTGCAAACTTTCTTGGA
TGTGTTTCAAATAAGATAAAGTCTCCGTATGGCAAAGCGCATTCTTCTCC
ATGATGTCTTGAACATTGACGAACGGATATCGAACATTTTTGAAGATTTT
AATGGATTGGAATAATTTCACTTTGACCACAAAACGAATGGCTTCTTTAT
ATTGCTTATTAAGCAAGCTAGACATCGGCATAACGTTAGAGCTCTTCTTA
CGTTTCTCCGCTTTGCTACTCGTACGTAATTTCAATCGATGTAAACGTCG
GTCTTCTTCTCGCTCTTCTTGACTCGTTGTCCCATTACTGAAAGGTTTGG
TCATGCTTCTCTTCATCTTCTTGAAAGAGAATCCTTTCTTTTTACCCTCC
TCATCAGTTTCAACCACCATCCTGTTCGGGTAAACACTCGACTTCATGAT
CTCTTGAACACCGGGTAAGATCTTGTAATACTCAGGGGTGTTATTTTTCC
CCAAGATTTGCGGGAAGAAGAAAAACCAAGTGCCTTGTAGTTGATAGTTA
CGTGGACGTACGGCGTAGTTTCGCCAAAAAGTTTGTAGAACAACGGCAGC
CGGGTTACGTACTTTGAGGAAGCGACGTTGTTTCTTTTGTTTAGCGACTT
GTAGAGCGAAACCTGAGCCAAGAATACCGGCCGGTAAAGCGAAGAAAGCG
CACCCTACCAACGCAAAAACGCCGGTCAATAGCTTTCCAGCCCAGGTTTC
CGGGCTAATATCGCCGTAACCTACGGATGTAACAGTAATCATAGCCCAAT
ATAATCCATTAGCCATATTGTCAATCGTACTAGCCTCTGCACCTGATTTC
TCGATGATATATATCAAATAAGTTCCACCAAACAAGATGATAAAGCCAAC
AAAGTAACACGTAACTAGTTCCTTTCTATGCTTGTACACAACACGACCCA
TAGTGCGTAGATCACCTCTTTGCCGATCCAAACGTAAAATACGAAATATC
TGTAAGAACCTCGTAATACGTAGGATAGTAAAGTAAGCAGTTTTGATACT
CAGTAAGGCCGTCGTTAGCGTGGACACAATAACAAAGAGATCAATCATCA
TATATAATGTCCTCATGAAGCGAAATTTGCCGGCATAACCTTTATATTTG
CCAAGAAAGCTGCATGACCAAAGGCGCGCCAAATACTCAACAATAAACCA
CGATAGCAGTGACAATTCATAATACAAAATCAAATCTTTTAGAATTTCAT
TATCTTCGTACGATTGGATAGTGGATAAAATACTCGTCACTATACTTCCA
ACGATAAGTAGAAGGTTCAGTAAATGGTAACAGATGGCTATTTTGGTTTC
CGGTCGCTCCAGAAAGTAGTAGACAATCTTACGAAGATCTTTGTAACGTG
ATTTCGCATCCATTGACGTTGCCTCCATCAGACTTGCAAGCTCTGTATCC
GTACTGCCGGTTAGACTTTTCTTTTTGTTATGTGCCATTTTTTCTTTATG
GTTGTTTTTATACAACCCCCAGAATTTTTTCTTCTAAAGCCTAAAAGTCT
ACTCTAAAATGTCTAATTTTGTTGATGTTTTTTTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003307-exon-sc0000026-1575043694:196239..198776 | TCONS_00003307-exon-sc0000026-1575043694:196239..198776 | Clytia hemisphaerica | exon |
| TCONS_00003307-exon-sc0000026-1510915933:196239..198776 | TCONS_00003307-exon-sc0000026-1510915933:196239..198776 | Clytia hemisphaerica | exon |
| TCONS_00003307-exon-sc0000026-1491911889:196239..198776 | TCONS_00003307-exon-sc0000026-1491911889:196239..198776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:196239..198776 - |
Blast
BLAST of TCONS_00003307 vs. Swiss-Prot (Human)
Match: KCNQ4 (Potassium voltage-gated channel subfamily KQT member 4 OS=Homo sapiens GN=KCNQ4 PE=1 SV=2) HSP 1 Score: 245.358 bits (625), Expect = 2.125e-69 Identity = 124/302 (41.06%), Postives = 186/302 (61.59%), Query Frame = -2
Query: 1467 SMDAKSRYKDLRKIVYYFLERPETKIAICYHLLNLLLIVGSIVTSILSTIQSYEDNEILKDLILYYELSLLSWFIVEYLARLWSCSFLGKYKGYAGKFRFMRTLYMMIDLFVIVSTLTTALLSIKTAYF--TILRITRFLQIFRILRLDRQRGDLRTMGRVVYKHRKELVTCYFVGFIILFGGTYLIYIIEKSGAEASTIDNMANGLYWAMITVTSVGYGDISPETWAGKLLTGVFALVGCAFFALPAGILGSGFALQVAKQKKQRRFLKVRNPAAVVLQTFWRNYAVRPRNYQLQGTWFFF 2366
S A RY+ L+ VY LERP A YH+ LL+ +V S+LSTIQ E E+ + +L E ++ F +EY+ R+WS +Y+G+ G+FRF R + +ID V V+++ + F + LR RFLQI R++R+DR+ G + +G VVY H KEL+T +++GF++L ++L+Y+ EK S + A+ L+W IT+T++GYGD +P TW G++L FAL+G +FFALPAGILGSGFAL+V +Q +Q+ F K R PAA ++Q WR Y+ L TW+++
Sbjct: 73 SSAAHKRYRRLQNWVYNVLERPR-GWAFVYHVFIFLLVFSCLVLSVLSTIQ--EHQELANECLLILEFVMIVVFGLEYIVRVWSAGCCCRYRGWQGRFRFARKPFCVIDFIVFVASVAVIAAGTQGNIFATSALRSMRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFASFLVYLAEKDAN--SDFSSYADSLWWGTITLTTIGYGDKTPHTWLGRVLAAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRMPAANLIQAAWRLYSTDMSRAYLTATWYYY 369
The following BLAST results are available for this feature:
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