TCONS_00003298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003298
Unique NameTCONS_00003298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003298 ID=TCONS_00003298|Name=TCONS_00003298|organism=Clytia hemisphaerica|type=transcript|length=358bp
TTCTCTAGCGCCGGACTAGGGAAAGGGTTTTAGGGTTTTCcgcttcaatc
attttcaatttcatgttcAATGTTCTGTAGattaaccaggtaggtccata
aaagtctTGTTCGATTATTCATTCAGAACCATACAGGGACTGATAACATC
AACCATAGACATCATTAAATCTCCATATGGTTCACTTTACAAGTCATTAG
CTGGCAATTCCAAATCTTCATAGCTAATGGCACGGACTTTCTCAAAGTTT
GGTTTGTCTACTTTCAAATATTGCCAATCATAAAGATTGTCGTCATACGT
TAATAACTCGATGTAATATTTCGCTCCTTTCACCAAATAACGTGTGCATG
AAAACTCa
Run BLAST on NCBI

transcript from alignment at sc0000026:973960..974544+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003298 ID=TCONS_00003298|Name=TCONS_00003298|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at sc0000026:973960..974544+ (Clytia hemisphaerica)
TTCTCTAGCGCCGGACTAGGGAAAGGGTTTTAGGGTTTTCcgcttcaatc
attttcaatttcatgttcAATGTTCTGTAGattaaccaggtaggtccata
aaagtctTGTTCGATTATTCATTCAGAACCATACAGGGACTGATAACATC
AACCATAGACATCATTAAATCTCCATATGGTTCACTTTACAAGTCATTAG
CTGGCAATTCCAAATCTTCATAGCTAATGGCACGGACTTTATCCTCAAAG
TTCGGTTTGTCTACTTTCAAATATTGCCAATCATAGAGATTGTCGTCATA
CGTTAATAACTCGATGTAATATTTCGCTCCTTTCACCAAATAACGTGTGC
ATGAAAACTCgctaaattaaaagaaagatttagaaacgAATACCTACTTT
AGAGGTTTGTCACATTTTGTTATGTTACGTActttccgccattatgaaag
caaacgttcgatttgNCCTCAAAGTTTGGTTTGTCTACTTTCAAATATTG
CCAATCATAAAGATTGTCGTCATACGTTAATAACTCGATGTAATATTTCG
CTCCTTTCACCAAATAACGTGTGCATGAAAACTCa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001834XLOC_001834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003298-exon-sc0000026-1491911889:973960..974199TCONS_00003298-exon-sc0000026-1491911889:973960..974199Clytia hemisphaericaexon
TCONS_00003298-exon-sc0000026-1510915933:973960..974199TCONS_00003298-exon-sc0000026-1510915933:973960..974199Clytia hemisphaericaexon
TCONS_00003298-exon-sc0000026-1575043694:973960..974199TCONS_00003298-exon-sc0000026-1575043694:973960..974199Clytia hemisphaericaexon
TCONS_00003298-exon-sc0000026-1491911889:974427..974544TCONS_00003298-exon-sc0000026-1491911889:974427..974544Clytia hemisphaericaexon
TCONS_00003298-exon-sc0000026-1510915933:974427..974544TCONS_00003298-exon-sc0000026-1510915933:974427..974544Clytia hemisphaericaexon
TCONS_00003298-exon-sc0000026-1575043694:974427..974544TCONS_00003298-exon-sc0000026-1575043694:974427..974544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:973960..974544 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.4291	11.1451	9.43584	10.0228	0	0	0	0	0	0.668334	0	0	0.791783	0	0.135204	0	0.178745	0	0	0.55017	0.460428	0.336871	4.05428	1.58213	2.81208	4.01172	0	0	3.17134	1.10373
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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