Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003295 ID=TCONS_00003295|Name=TCONS_00003295|organism=Clytia hemisphaerica|type=transcript|length=2440bpRun BLAST on NCBI protein sequence of TCONS_00003295-protein >TCONS_00003295-protein ID=TCONS_00003295-protein|Name=TCONS_00003295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MPREIITLQVGQCGNQIGMEFWKQLCAEHGISPEGMLEDFATDGTDRKDVRun BLAST on NCBI transcript from alignment at sc0000026:915955..927249+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003295 ID=TCONS_00003295|Name=TCONS_00003295|organism=Clytia hemisphaerica|type=transcript|length=11295bp|location=Sequence derived from alignment at sc0000026:915955..927249+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:915955..927249+ >TCONS_00003295 ID=TCONS_00003295|Name=TCONS_00003295|organism=Clytia hemisphaerica|type=CDS|length=23103bp|location=Sequence derived from alignment at sc0000026:915955..927249+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003295 vs. Swiss-Prot (Human)
Match: TBG1 (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2) HSP 1 Score: 810.061 bits (2091), Expect = 0.000e+0 Identity = 387/451 (85.81%), Postives = 422/451 (93.57%), Query Frame = 2 Query: 101 MPREIITLQVGQCGNQIGMEFWKQLCAEHGISPEGMLEDFATDGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIDSIMQSPYANLYNPENIYTSKDXXXXXXXXXXXFTQAESLHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYMLERINDRYPKKLIQTYSVFPQQDDISDVVVQPYNSMLTLKRLTQNADCVNVLDNTALNRIAADRLHIPNPTFSQVNQLVSTIMATSTTTLRYPGYMNNDLIGLIASLIPTSRLHFLMTGYTPLTTDQKTTSVRKTTVLDVMRRLLQPKNMMVATPRDRKRNHCYISILNIIQGEVDPTQVHKSLQRIRERKLAEFIPWGPASIQVALSRKSPYIQTAHRVSGLMLANHTSIASVFERTCKLYDKLRKREAFLEQYKKVDMFKDSLDELDNSREIVQQLIDEYYAATKPDYIQWGTQSQ 1453 MPREIITLQ+GQCGNQIG EFWKQLCAEHGISPEG++E+FAT+GTDRKDVFFYQADDEHYIPRAVLLDLEPRVI SI+ SPYA LYNPENIY S+ GGGAGNNW GF+Q E +HEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSG+GSY+LER+NDRYPKKL+QTYSVFP QD++SDVVVQPYNS+LTLKRLTQNADCV VLDNTALNRIA DRLHI NP+FSQ+NQLVSTIM+ STTTLRYPGYMNNDLIGLIASLIPT RLHFLMTGYTPLTTDQ SVRKTTVLDVMRRLLQPKN+MV+T RDR+ NHCYI+ILNIIQGEVDPTQVHKSLQRIRERKLA FIPWGPASIQVALSRKSPY+ +AHRVSGLM+ANHTSI+S+FERTC+ YDKLRKREAFLEQ++K DMFKD+ DE+D SREIVQQLIDEY+AAT+PDYI WGTQ Q Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 451 The following BLAST results are available for this feature:
BLAST of TCONS_00003295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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