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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003289 ID=TCONS_00003289|Name=TCONS_00003289|organism=Clytia hemisphaerica|type=transcript|length=1325bp
ATTATTATGCAGCAAAGTTTTTGCAAAGTGACAATGAAgGTCAACCACGG
AGGAAAATATCGCGCAAACTTCCTGCAATGAATTCTTTAAAAGATAATGA
AAAAAGGACGAAAGACAAGCCATGCTATCGACATTACTATAGCAAAATAT
TATTGGTCATAGTTTACAACCACCCACATTACGAAAGCATACCATTACTC
AAACAGTTCTACCAGCCTGTCTTTCCAAACATATATTTCTGTGGACCAAA
CTCGAGGCTAAACTCTTCGAAAAACGTACACGAGTTCAATATTGTCCGTG
GTATATTTGGTTACGAATGTCTCACAAATGCAATACGTGAAAATCACGAA
CTCGGTTACGAAGGTTATTTCTATATCAATGATGATGTCATATTAAATTT
CTGGAACttgattaaaattaaatttgatataaacaaaatttgGTCATTTA
CAACGTTCAAAGAACCATTGAATGAGAAAACACCGACCCATTGGTATTGG
TGGATATCTCCGTTCGGTTTTGAGAAAGTCCGTAATGCGGTTAACCAAAT
TGAAAGCCTATCCGGTCGTTTTCCGTCTTACAAACGTATGTATGACACTT
TTAGACGTAACGGGAACGGCTCTACGTACGCTTATAATGGGCGTTCAGAT
ATTGTGTACGTACCACGTCAGTATGCAATCCAATTCCAAGAACTATCCTC
CATATTCAGAAGCGAAGACGTTTTCCTGGAAATTGCGATTCCAACAATAG
CTCGATTTTTAGATTTAGAGAAAGACATTCATAAACTACATGGTCATTAC
ATACCCGGTGACGTCCGCAAAAATGACACTCGCGTAACGGACAGTCGACA
TTTTTGGGTGACGTACTTGAAGAATCCAAACCTGTTGTTTATTCATCCGT
TCAAGTTGCAGCACCGGTATGAGAATAATAGAGAACTGAATTTACTTTTG
ATGAAACatattttaatcaaaagatcAAGAGAATTAGCTTGTTttcagta
aaaataaaaacacataAGGAAATGACTTACAAGCAGCAATCTATCCAGGT
CTGTGACTCTTTATTCttgtatttcattttttgtatttaCAGTTTTTATA
TCTGAAAGGAAAGTTGAAGATAATAACATATGGCTGGTATAATGGCTGAT
TACAATGTCAATACAACTAGGGTGTACATAAAGCACCAAATTACTCATTt
aattgacaaaattttaaaactccATTATCATTATCTACTTTATGACGATA
AACCGGTCGAAATTTATCatagaaaattttaataacATATTGATTACCAG
TGGTTTGCCAAAAAGAGTATAAAAC Run BLAST on NCBI protein sequence of TCONS_00003289-protein >TCONS_00003289-protein ID=TCONS_00003289-protein|Name=TCONS_00003289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
YYAAKFLQSDNEGQPRRKISRKLPAMNSLKDNEKRTKDKPCYRHYYSKIL
LVIVYNHPHYESIPLLKQFYQPVFPNIYFCGPNSRLNSSKNVHEFNIVRG
IFGYECLTNAIRENHELGYEGYFYINDDVILNFWNLIKIKFDINKIWSFT
TFKEPLNEKTPTHWYWWISPFGFEKVRNAVNQIESLSGRFPSYKRMYDTF
RRNGNGSTYAYNGRSDIVYVPRQYAIQFQELSSIFRSEDVFLEIAIPTIA
RFLDLEKDIHKLHGHYIPGDVRKNDTRVTDSRHFWVTYLKNPNLLFIHPF
KLQHRYENNRELNLLLMKHILIKRSRELACFQ Run BLAST on NCBI transcript from alignment at sc0000026:636140..637871+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003289 ID=TCONS_00003289|Name=TCONS_00003289|organism=Clytia hemisphaerica|type=transcript|length=1732bp|location=Sequence derived from alignment at sc0000026:636140..637871+ (Clytia hemisphaerica)
ATTATTATGCAGCAAAGTTTTTGCAAAGTGACAATGAAggtaactttttt
tatttttctccgcttttttttctaagattatctTCCGCCCCGACGATCCT
AAGTAAAGaggtttaaaaacttttaaagaaaattaatgTGAACGCAACAA
CGTGTTACTCTCGGGTAACAAGCGTCCCatcatttttctgaaaatgtctT
CTCATTTGATAATGATATTGCTCATTCTTTTGTCCTGCTGACTATTTTGG
AGTCGaaggtatttaaaaaaattatcggGGACATAGTGTGCCCCCTCGCC
ttcaattttgcaaaaaaaaaggcaGTGTTGGCCGTAAAATGTGGACTTAT
GAGGAGAGAGGCAGAGACACTTTACATGAGCAATTCTACTATTTGAAGTT
GTCACGTCAAAAAATCCATTCAAAAATGCTCCAATTCTTTTTGTAGGTCA
ACCACGGAGGAAAATATCGCGCAAACTTCCTGCAATGAATTCTTTAAAAG
ATAATGAAAAAAGGACGAAAGACAAGCCATGCTATCGACATTACTATAGC
AAAATATTATTGGTCATAGTTTACAACCACCCACATTACGAAAGCATACC
ATTACTCAAACAGTTCTACCAGCCTGTCTTTCCAAACATATATTTCTGTG
GACCAAACTCGAGGCTAAACTCTTCGAAAAACGTACACGAGTTCAATATT
GTCCGTGGTATATTTGGTTACGAATGTCTCACAAATGCAATACGTGAAAA
TCACGAACTCGGTTACGAAGGTTATTTCTATATCAATGATGATGTCATAT
TAAATTTCTGGAACttgattaaaattaaatttgatataaacaaaatttgG
TCATTTACAACGTTCAAAGAACCATTGAATGAGAAAACACCGACCCATTG
GTATTGGTGGATATCTCCGTTCGGTTTTGAGAAAGTCCGTAATGCGGTTA
ACCAAATTGAAAGCCTATCCGGTCGTTTTCCGTCTTACAAACGTATGTAT
GACACTTTTAGACGTAACGGGAACGGCTCTACGTACGCTTATAATGGGCG
TTCAGATATTGTGTACGTACCACGTCAGTATGCAATCCAATTCCAAGAAC
TATCCTCCATATTCAGAAGCGAAGACGTTTTCCTGGAAATTGCGATTCCA
ACAATAGCTCGATTTTTAGATTTAGAGAAAGACATTCATAAACTACATGG
TCATTACATACCCGGTGACGTCCGCAAAAATGACACTCGCGTAACGGACA
GTCGACATTTTTGGGTGACGTACTTGAAGAATCCAAACCTGTTGTTTATT
CATCCGTTCAAGTTGCAGCACCGGTATGAGAATAATAGAGAACTGAATTT
ACTTTTGATGAAACatattttaatcaaaagatcAAGAGAATTAGCTTGTT
ttcagtaaaaataaaaacacataAGGAAATGACTTACAAGCAGCAATCTA
TCCAGGTCTGTGACTCTTTATTCttgtatttcattttttgtatttaCAGT
TTTTATATCTGAAAGGAAAGTTGAAGATAATAACATATGGCTGGTATAAT
GGCTGATTACAATGTCAATACAACTAGGGTGTACATAAAGCACCAAATTA
CTCATTtaattgacaaaattttaaaactccATTATCATTATCTACTTTAT
GACGATAAACCGGTCGAAATTTATCatagaaaattttaataacATATTGA
TTACCAGTGGTTTGCCAAAAAGAGTATAAAAC Coding sequence (CDS) from alignment at sc0000026:636140..637871+ >TCONS_00003289 ID=TCONS_00003289|Name=TCONS_00003289|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at sc0000026:636140..637871+ (Clytia hemisphaerica)
TATTATGCAGCAAAGTTTTTGCAAAGTGACAATGAAgGTCAACCACGGAG
GAAAATATCGCGCAAACTTCCTGCAATGAATTCTTTAAAAGATAATGAAA
AAAGGACGAAAGACAAGCCATGCTATCGACATTACTATAGCAAAATATTA
TTGGTCATAGTTTACAACCACCCACATTACGAAAGCATACCATTACTCAA
ACAGTTCTACCAGCCTGTCTTTCCAAACATATATTTCTGTGGACCAAACT
CGAGGCTAAACTCTTCGAAAAACGTACACGAGTTCAATATTGTCCGTGGT
ATATTTGGTTACGAATGTCTCACAAATGCAATACGTGAAAATCACGAACT
CGGTTACGAAGGTTATTTCTATATCAATGATGATGTCATATTAAATTTCT
GGAACttgattaaaattaaatttgatataaacaaaatttgGTCATTTACA
ACGTTCAAAGAACCATTGAATGAGAAAACACCGACCCATTGGTATTGGTG
GATATCTCCGTTCGGTTTTGAGAAAGTCCGTAATGCGGTTAACCAAATTG
AAAGCCTATCCGGTCGTTTTCCGTCTTACAAACGTATGTATGACACTTTT
AGACGTAACGGGAACGGCTCTACGTACGCTTATAATGGGCGTTCAGATAT
TGTGTACGTACCACGTCAGTATGCAATCCAATTCCAAGAACTATCCTCCA
TATTCAGAAGCGAAGACGTTTTCCTGGAAATTGCGATTCCAACAATAGCT
CGATTTTTAGATTTAGAGAAAGACATTCATAAACTACATGGTCATTACAT
ACCCGGTGACGTCCGCAAAAATGACACTCGCGTAACGGACAGTCGACATT
TTTGGGTGACGTACTTGAAGAATCCAAACCTGTTGTTTATTCATCCGTTC
AAGTTGCAGCACCGGTATGAGAATAATAGAGAACTGAATTTACTTTTGAT
GAAACatattttaatcaaaagatcAAGAGAATTAGCTTGTTttcagtaaT
ATTATGCAGCAAAGTTTTTGCAAAGTGACAATGAAgGTCAACCACGGAGG
AAAATATCGCGCAAACTTCCTGCAATGAATTCTTTAAAAGATAATGAAAA
AAGGACGAAAGACAAGCCATGCTATCGACATTACTATAGCAAAATATTAT
TGGTCATAGTTTACAACCACCCACATTACGAAAGCATACCATTACTCAAA
CAGTTCTACCAGCCTGTCTTTCCAAACATATATTTCTGTGGACCAAACTC
GAGGCTAAACTCTTCGAAAAACGTACACGAGTTCAATATTGTCCGTGGTA
TATTTGGTTACGAATGTCTCACAAATGCAATACGTGAAAATCACGAACTC
GGTTACGAAGGTTATTTCTATATCAATGATGATGTCATATTAAATTTCTG
GAACttgattaaaattaaatttgatataaacaaaatttgGTCATTTACAA
CGTTCAAAGAACCATTGAATGAGAAAACACCGACCCATTGGTATTGGTGG
ATATCTCCGTTCGGTTTTGAGAAAGTCCGTAATGCGGTTAACCAAATTGA
AAGCCTATCCGGTCGTTTTCCGTCTTACAAACGTATGTATGACACTTTTA
GACGTAACGGGAACGGCTCTACGTACGCTTATAATGGGCGTTCAGATATT
GTGTACGTACCACGTCAGTATGCAATCCAATTCCAAGAACTATCCTCCAT
ATTCAGAAGCGAAGACGTTTTCCTGGAAATTGCGATTCCAACAATAGCTC
GATTTTTAGATTTAGAGAAAGACATTCATAAACTACATGGTCATTACATA
CCCGGTGACGTCCGCAAAAATGACACTCGCGTAACGGACAGTCGACATTT
TTGGGTGACGTACTTGAAGAATCCAAACCTGTTGTTTATTCATCCGTTCA
AGTTGCAGCACCGGTATGAGAATAATAGAGAACTGAATTTACTTTTGATG
AAACatattttaatcaaaagatcAAGAGAATTAGCTTGTTttcagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003289-exon-sc0000026-1491911889:636140..636178 | TCONS_00003289-exon-sc0000026-1491911889:636140..636178 | Clytia hemisphaerica | exon |
| TCONS_00003289-exon-sc0000026-1510915933:636140..636178 | TCONS_00003289-exon-sc0000026-1510915933:636140..636178 | Clytia hemisphaerica | exon |
| TCONS_00003289-exon-sc0000026-1575043694:636140..636178 | TCONS_00003289-exon-sc0000026-1575043694:636140..636178 | Clytia hemisphaerica | exon |
| TCONS_00003289-exon-sc0000026-1491911889:636586..637871 | TCONS_00003289-exon-sc0000026-1491911889:636586..637871 | Clytia hemisphaerica | exon |
| TCONS_00003289-exon-sc0000026-1510915933:636586..637871 | TCONS_00003289-exon-sc0000026-1510915933:636586..637871 | Clytia hemisphaerica | exon |
| TCONS_00003289-exon-sc0000026-1575043694:636586..637871 | TCONS_00003289-exon-sc0000026-1575043694:636586..637871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:636140..637871 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005049 | STL-like |
Blast
The following BLAST results are available for this feature:
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