TCONS_00003271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003271
Unique NameTCONS_00003271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003271 ID=TCONS_00003271|Name=TCONS_00003271|organism=Clytia hemisphaerica|type=transcript|length=694bp
GTGAAAGTAAAAGAAGGATAACCATCCATGTCTGTTGCAAGTGAATATTA
AAGATTGAacgataaaaaaaagaaataaaaatgggAGCAGATGATCCGTT
AGAACCCTTTGTTGATATTATTCGAACACAAGATACGCAGAAGCGGATCA
AGTTAGCAGCACAGATCAAACCAGTTTTAACATCTTTACACAATTATAAA
GGTATTGCAGGAAACTACATTATTGATGGTTTGGTGGCTTGGATCAGTTC
TGGAAACTTCaagGTTTCACAAATGGGTTTGGAGCTTGTTGGTATTTTAG
CATACAACATGAACGTTAATTTTAAACCACAAGTACCCTCAGTCATACCT
CCAGTAGTCGATCGTCTTGGTGATGCCAAAAAGATTGTTCGTGAGCAAGC
CCTTGAATTATTGAGTATTTTGATGGACCCTGTCTCAAGCCCTCAGTTTG
TGTTTGACAATTTGAATCAATATTACAACCACAAAAATTGGAGAGTACGA
GAAGTGCTCATGATCTGTTTAGCATCCACCATTCAAAGATTCAGTGCAAC
AAGTCTACAGATCAGCAAAATCACACCTGAGCTAGTGAAATTATTACAGG
ATCCAACGGGTCAGGTTCGAGATACAGCCTTTACAACGGTCATCGAGATT
TACAAACATGTGGGTGATCGATTTCGTCACGATCTTGCAAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00003271-protein

>TCONS_00003271-protein ID=TCONS_00003271-protein|Name=TCONS_00003271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MGADDPLEPFVDIIRTQDTQKRIKLAAQIKPVLTSLHNYKGIAGNYIIDG
LVAWISSGNFKVSQMGLELVGILAYNMNVNFKPQVPSVIPPVVDRLGDAK
KIVREQALELLSILMDPVSSPQFVFDNLNQYYNHKNWRVREVLMICLAST
IQRFSATSLQISKITPELVKLLQDPTGQVRDTAFTTVIEIYKHVGDRFRH
DLAR
Run BLAST on NCBI

transcript from alignment at sc0000026:444953..448921+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003271 ID=TCONS_00003271|Name=TCONS_00003271|organism=Clytia hemisphaerica|type=transcript|length=3969bp|location=Sequence derived from alignment at sc0000026:444953..448921+ (Clytia hemisphaerica)
GTGAAAGTAAAAGAAGGATAACCATCCATGTCTGTTGCAAGTGAATATTA
AAGATTGAacgataaaaaaaagaaataaaaatgggAGCAGATGATCCGTT
AGAACCCTTTGTTGATATTATTCGAACACAAGATACGCAGAAGCGGATCA
AGTTAGCAGCACAGATCAAACCAGTTTTAACATCTTTACACAATTATAAA
GGTATTGCAGGAAACTACATTATTGATGGTTTGGTGGCTTGGATCAGTTC
TGGAAACTTCaaggtatatttatttttctctttaaagCCTTATTAAGAGT
CAAAAGCAACTAAGTATGATTTTGAATTATGATACaaatatagcttttct
ttaAATCTACTTGTGTGAAAGGGACGCATACCCATTCGCATTGCAATCGA
AATTCTATCAGATTTGACTTTCTTATCATTATCATCTGTCATTTCATAGG
TTTCACAAATGGGTTTGGAGCTTGTTGGTATTTTAGCATACAACATGAAC
GTTAATTTTAAACCACAAGTACCCTCAGGTAAtatatttgaacatttttt
gtaGATTCgattttctttaactttgaaTGTAGGTTTTGCGTTCGAAGAac
aatgaaaaactttttcttgtGTGATTTTGCAACAAATTGCAAGTGTACTG
CGATTGAATGGCCAAGCTCTTCAATTTTTTACTgcttttctttcattgaa
attactTTTGAATTTCAGTCATACCTCCAGTAGTCGATCGTCTTGGTGAT
GCCAAAAAGATTGTAAGTTTTTTATTGGATGTCAACCTTTATAATTTCTC
AGATCTTCCTCATCCTAATAAACTAATAAAGCTTTAGACCACGTTCATCA
CACGCTACAGTTCTATtttcattctattggttaaattcaatttttacgtc
acttctaaccaatagaatggtttcatttcgtttcggagcaaaAAAGAATT
GTTATGTGCGAGCATGGTCTTAAAATATAcacattttagtttaattttaa
atttggcatATAATTATGATGATCATGATTGACTTGTTTTTTTGTAGGTT
CGTGAGCAAGCCCTTGAATTATTGAGTATTTTGATGGACCCTGTCTCAAG
CCCTCAGGTATCAACTTTATTTTCGTTAATACATTAAAGTAGGGTGTAAA
CTGGAaccatgaaaaaatactttttttggattttcaaaattgtcacaatt
ttttatcaaaatttatcatattgttAGACTTCTTGCGNNNNNNNNNNNNN
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NNCCTttaatagtcttaaaatggacaaaaaatgccatttttgccgttttt
tgctACTACCGCGAATCAGATACCCCTGGGGCAAACAGTGGATTTTTGAC
TTATTGACCTCAGAATTGCGCAAAAAGTCTTAcaatataataaattttga
taaataattgtgacaattttgaaactctaaaattcaaaattcagttTACA
CCCTACAAAGGTCGTTCATTCTTTGACCTTCCATGGTTTTCAATGTAATT
AAATAGTCTGCAATTATGTGCAACTAGTTCccaattactttttaaaagac
tttttttAGGCAGACTACCATCTAACTACGATCTTTAGTGTATTCACATT
ATTAAtcttttcatattttgtttCAGTTTGTGTTTGACAATTTGAATCAA
TATTACAACCACAAAAATTGGAGAGTACGAGAAGTGCTCATGATCTGTTT
AGCATCCACCATTCAAAGGTACACAGAACCAGATGAAATTAATCGAATCA
TANAGTGCTCATGATCTGTTTAGCATCCACCATTCAAAGGTACACAGAAC
CAGATGAAATTAATCGACTCATAATAAATACTGATGATTTAGCAGTCAAG
CTTTAAAGGGGAATGGTAATATCTGAAAATCCAAGGAGAAGGGTCAGAAA
TATTCCTCAAAAAGGAACCCTGTTTAGTTTAAGAATGTATACTTATCCAT
TTTTTTGTACtttcaaaaggaaaatttgCCTGCTATGTAACCCATTCCTA
TTTTTGAGGCAGTTTAGCGCAGTATGTTTAATTACATTATTCTATAATCT
TTACATTCCACTCGCCTTAACTTTGCCACCATTGCATTAGTAATGAAATA
CTGAATTCTGCAACGCAATATTTCATGTCACTCACTCCAGTAACTCGAAT
CTCCTTTCTTTAGATTCAGTGCAACAAGTCTACAGATCAGCAAAATCACA
CCTGAGCTAGTGAAATTATTACAGGATCCAACGGGTCAGGTTCGAGATAC
AGCCTTTACAACGGTCATCGAGATTTACAAACATGTGGGTGATCGATTTC
GTCACGATCTTGCAAGAAG

Coding sequence (CDS) from alignment at sc0000026:444953..448921+

>TCONS_00003271 ID=TCONS_00003271|Name=TCONS_00003271|organism=Clytia hemisphaerica|type=CDS|length=3672bp|location=Sequence derived from alignment at sc0000026:444953..448921+ (Clytia hemisphaerica)
atgggAGCAGATGATCCGTTAGAACCCTTTGTTGATATTATTCGAACACA
AGATACGCAGAAGCGGATCAAGTTAGCAGCACAGATCAAACCAGTTTTAA
CATCTTTACACAATTATAAAGGTATTGCAGGAAACTACATTATTGATGGT
TTGGTGGCTTGGATCAGTTCTGGAAACTTCaagGTTTCACAAATGGGTTT
GGAGCTTGTTGGTATTTTAGCATACAACATGAACGTTAATTTTAAACCAC
AAGTACCCTCAGTCATACCTCCAGTAGTCGATCGTCTTGGTGATGCCAAA
AAGATTGTTCGTGAGCAAGCCCTTGAATTATTGAGTATTTTGATGGACCC
TGTCTCAAGCCCTCAGTTTGTGTTTGACAATTTGAATCAATATTACAACC
ACAAAAATTGGAGAGTACGAGAAGTGCTCATGATCTGTTTAGCATCCACC
ATTCAAAGATTCAGTGCAACAAGTCTACAGATCAGCAAAATCACACCTGA
GCTAGTGAAATTATTACAGGATCCAACGGGTCAGGTTCGAGATACAGCCT
TTACAACGGTCATCGAGATTTACAAACATGTGGGTGATCGATTTCGTCAC
GATCTTGCAAGAatgggAGCAGATGATCCGTTAGAACCCTTTGTTGATAT
TATTCGAACACAAGATACGCAGAAGCGGATCAAGTTAGCAGCACAGATCA
AACCAGTTTTAACATCTTTACACAATTATAAAGGTATTGCAGGAAACTAC
ATTATTGATGGTTTGGTGGCTTGGATCAGTTCTGGAAACTTCaagGTTTC
ACAAATGGGTTTGGAGCTTGTTGGTATTTTAGCATACAACATGAACGTTA
ATTTTAAACCACAAGTACCCTCAGTCATACCTCCAGTAGTCGATCGTCTT
GGTGATGCCAAAAAGATTGTTCGTGAGCAAGCCCTTGAATTATTGAGTAT
TTTGATGGACCCTGTCTCAAGCCCTCAGTTTGTGTTTGACAATTTGAATC
AATATTACAACCACAAAAATTGGAGAGTACGAGAAGTGCTCATGATCTGT
TTAGCATCCACCATTCAAAGATTCAGTGCAACAAGTCTACAGATCAGCAA
AATCACACCTGAGCTAGTGAAATTATTACAGGATCCAACGGGTCAGGTTC
GAGATACAGCCTTTACAACGGTCATCGAGATTTACAAACATGTGGGTGAT
CGATTTCGTCACGATCTTGCAAGAatgggAGCAGATGATCCGTTAGAACC
CTTTGTTGATATTATTCGAACACAAGATACGCAGAAGCGGATCAAGTTAG
CAGCACAGATCAAACCAGTTTTAACATCTTTACACAATTATAAAGGTATT
GCAGGAAACTACATTATTGATGGTTTGGTGGCTTGGATCAGTTCTGGAAA
CTTCaagGTTTCACAAATGGGTTTGGAGCTTGTTGGTATTTTAGCATACA
ACATGAACGTTAATTTTAAACCACAAGTACCCTCAGTCATACCTCCAGTA
GTCGATCGTCTTGGTGATGCCAAAAAGATTGTTCGTGAGCAAGCCCTTGA
ATTATTGAGTATTTTGATGGACCCTGTCTCAAGCCCTCAGTTTGTGTTTG
ACAATTTGAATCAATATTACAACCACAAAAATTGGAGAGTACGAGAAGTG
CTCATGATCTGTTTAGCATCCACCATTCAAAGATTCAGTGCAACAAGTCT
ACAGATCAGCAAAATCACACCTGAGCTAGTGAAATTATTACAGGATCCAA
CGGGTCAGGTTCGAGATACAGCCTTTACAACGGTCATCGAGATTTACAAA
CATGTGGGTGATCGATTTCGTCACGATCTTGCAAGAatgggAGCAGATGA
TCCGTTAGAACCCTTTGTTGATATTATTCGAACACAAGATACGCAGAAGC
GGATCAAGTTAGCAGCACAGATCAAACCAGTTTTAACATCTTTACACAAT
TATAAAGGTATTGCAGGAAACTACATTATTGATGGTTTGGTGGCTTGGAT
CAGTTCTGGAAACTTCaagGTTTCACAAATGGGTTTGGAGCTTGTTGGTA
TTTTAGCATACAACATGAACGTTAATTTTAAACCACAAGTACCCTCAGTC
ATACCTCCAGTAGTCGATCGTCTTGGTGATGCCAAAAAGATTGTTCGTGA
GCAAGCCCTTGAATTATTGAGTATTTTGATGGACCCTGTCTCAAGCCCTC
AGTTTGTGTTTGACAATTTGAATCAATATTACAACCACAAAAATTGGAGA
GTACGAGAAGTGCTCATGATCTGTTTAGCATCCACCATTCAAAGATTCAG
TGCAACAAGTCTACAGATCAGCAAAATCACACCTGAGCTAGTGAAATTAT
TACAGGATCCAACGGGTCAGGTTCGAGATACAGCCTTTACAACGGTCATC
GAGATTTACAAACATGTGGGTGATCGATTTCGTCACGATCTTGCAAGAat
gggAGCAGATGATCCGTTAGAACCCTTTGTTGATATTATTCGAACACAAG
ATACGCAGAAGCGGATCAAGTTAGCAGCACAGATCAAACCAGTTTTAACA
TCTTTACACAATTATAAAGGTATTGCAGGAAACTACATTATTGATGGTTT
GGTGGCTTGGATCAGTTCTGGAAACTTCaagGTTTCACAAATGGGTTTGG
AGCTTGTTGGTATTTTAGCATACAACATGAACGTTAATTTTAAACCACAA
GTACCCTCAGTCATACCTCCAGTAGTCGATCGTCTTGGTGATGCCAAAAA
GATTGTTCGTGAGCAAGCCCTTGAATTATTGAGTATTTTGATGGACCCTG
TCTCAAGCCCTCAGTTTGTGTTTGACAATTTGAATCAATATTACAACCAC
AAAAATTGGAGAGTACGAGAAGTGCTCATGATCTGTTTAGCATCCACCAT
TCAAAGATTCAGTGCAACAAGTCTACAGATCAGCAAAATCACACCTGAGC
TAGTGAAATTATTACAGGATCCAACGGGTCAGGTTCGAGATACAGCCTTT
ACAACGGTCATCGAGATTTACAAACATGTGGGTGATCGATTTCGTCACGA
TCTTGCAAGAatgggAGCAGATGATCCGTTAGAACCCTTTGTTGATATTA
TTCGAACACAAGATACGCAGAAGCGGATCAAGTTAGCAGCACAGATCAAA
CCAGTTTTAACATCTTTACACAATTATAAAGGTATTGCAGGAAACTACAT
TATTGATGGTTTGGTGGCTTGGATCAGTTCTGGAAACTTCaagGTTTCAC
AAATGGGTTTGGAGCTTGTTGGTATTTTAGCATACAACATGAACGTTAAT
TTTAAACCACAAGTACCCTCAGTCATACCTCCAGTAGTCGATCGTCTTGG
TGATGCCAAAAAGATTGTTCGTGAGCAAGCCCTTGAATTATTGAGTATTT
TGATGGACCCTGTCTCAAGCCCTCAGTTTGTGTTTGACAATTTGAATCAA
TATTACAACCACAAAAATTGGAGAGTACGAGAAGTGCTCATGATCTGTTT
AGCATCCACCATTCAAAGATTCAGTGCAACAAGTCTACAGATCAGCAAAA
TCACACCTGAGCTAGTGAAATTATTACAGGATCCAACGGGTCAGGTTCGA
GATACAGCCTTTACAACGGTCATCGAGATTTACAAACATGTGGGTGATCG
ATTTCGTCACGATCTTGCAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001822XLOC_001822Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003271-proteinTCONS_00003271-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003271-exon-sc0000026-1491911889:444953..445215TCONS_00003271-exon-sc0000026-1491911889:444953..445215Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1510915933:444953..445215TCONS_00003271-exon-sc0000026-1510915933:444953..445215Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1575043694:444953..445215TCONS_00003271-exon-sc0000026-1575043694:444953..445215Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1491911889:445402..445480TCONS_00003271-exon-sc0000026-1491911889:445402..445480Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1510915933:445402..445480TCONS_00003271-exon-sc0000026-1510915933:445402..445480Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1575043694:445402..445480TCONS_00003271-exon-sc0000026-1575043694:445402..445480Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1491911889:445671..445714TCONS_00003271-exon-sc0000026-1491911889:445671..445714Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1510915933:445671..445714TCONS_00003271-exon-sc0000026-1510915933:445671..445714Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1575043694:445671..445714TCONS_00003271-exon-sc0000026-1575043694:445671..445714Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1491911889:446000..446059TCONS_00003271-exon-sc0000026-1491911889:446000..446059Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1510915933:446000..446059TCONS_00003271-exon-sc0000026-1510915933:446000..446059Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1575043694:446000..446059TCONS_00003271-exon-sc0000026-1575043694:446000..446059Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1491911889:448229..448320TCONS_00003271-exon-sc0000026-1491911889:448229..448320Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1510915933:448229..448320TCONS_00003271-exon-sc0000026-1510915933:448229..448320Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1575043694:448229..448320TCONS_00003271-exon-sc0000026-1575043694:448229..448320Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1491911889:448766..448921TCONS_00003271-exon-sc0000026-1491911889:448766..448921Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1510915933:448766..448921TCONS_00003271-exon-sc0000026-1510915933:448766..448921Clytia hemisphaericaexon
TCONS_00003271-exon-sc0000026-1575043694:448766..448921TCONS_00003271-exon-sc0000026-1575043694:448766..448921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:444953..448921 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.65665	6.20595	3.72709	3.48431	52.4801	40.3012	33.3863	34.8657	17.3831	23.8223	14.8963	15.5409	13.5246	12.2772	12.9595	14.4425	17.5723	18.9116	11.7418	20.3426	12.5184	10.8667	13.4196	16.3942	18.6135	14.9299	7.22183	5.99459	12.6658	13.0698
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR034085TOG
IPR011989ARM-like
IPR024395CLASP_N_dom
IPR021133HEAT_type_2
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00003271 vs. Swiss-Prot (Human)
Match: CLAP1 (CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.178e-40
Identity = 68/161 (42.24%), Postives = 108/161 (67.08%), Query Frame = 3 
Query:  213 NYIIDGLV-AWISSGNFKVSQMGLELVGILAYNMNVNFKPQVPSVIPPVVDRLGDAKKIVREQALELLSILMDPVSSPQFVFDNLNQYYNHKNWRVREVLMICLASTIQRFSATSLQISKITPELVKLLQDPTGQVRDTAFTTVIEIYKHVGDRFRHDLAR 692
            + ++DGL  +W++S N+KV  +G++++  L   +   FK Q+ +V+P ++DRLGDAK  VREQ   LL  +MD  ++PQ+V+D +   + HKN+R RE + +CL +T+    A +L +SKI P +  LL DP  QVRD A  +++EIY+HVG+R R DL++
Sbjct:   48 DKLVDGLATSWVNSSNYKVVLLGMDILSALVTRLQDRFKAQIGTVLPSLIDRLGDAKDSVREQDQTLLLKIMDQAANPQYVWDRMLGGFKHKNFRTREGICLCLIATLNASGAQTLTLSKIVPHICNLLGDPNSQVRDAAINSLVEIYRHVGERVRADLSK 208
The following BLAST results are available for this feature:
BLAST of TCONS_00003271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLAP13.178e-4042.24CLIP-associating protein 1 OS=Homo sapiens GN=CLAS... [more]
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