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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003267 ID=TCONS_00003267|Name=TCONS_00003267|organism=Clytia hemisphaerica|type=transcript|length=4622bpRun BLAST on NCBI protein sequence of TCONS_00003267-protein >TCONS_00003267-protein ID=TCONS_00003267-protein|Name=TCONS_00003267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp MSRRGSTFSERIHFEKQANFPTDIGSFNIGCKLASSHFDGSTFLLTKRADRun BLAST on NCBI transcript from alignment at sc0000026:267427..281806+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003267 ID=TCONS_00003267|Name=TCONS_00003267|organism=Clytia hemisphaerica|type=transcript|length=14380bp|location=Sequence derived from alignment at sc0000026:267427..281806+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:267427..281806+ >TCONS_00003267 ID=TCONS_00003267|Name=TCONS_00003267|organism=Clytia hemisphaerica|type=CDS|length=13101bp|location=Sequence derived from alignment at sc0000026:267427..281806+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003267 vs. Swiss-Prot (Human)
Match: STRAA (STE20-related kinase adapter protein alpha OS=Homo sapiens GN=STRADA PE=1 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 1.351e-52 Identity = 127/376 (33.78%), Postives = 197/376 (52.39%), Query Frame = 1
Query: 115 RLEVNSIMSRRGSTFSERIHFEKQANFPTDIGSFNIGCKLASSHFDGSTFLLTKRADISEDKLYVT-RKIDAEKLTTKDLQLIQDELNILNRLDHPNITKFFSCFVISEGFILTVYPLSDYGSCHDIIGAHFKNGLPSLLVGIILRSVVLALEHLHSLKIVHRAVKASHILLDSDGSVCLTGLRYCKQLPCD---QQICHSFPDHGLHMLAWIAPEILRQNLSGYGTSSDIYSLGITAVELITGTIPYSKLRPTEVLLQKLKGVVPQLPDSATIEEMHCDLSSS----NTSL-DGLEQTNDMMSVGSSASICSNSKRIRNLQQFVDICLNTDPLQRPIACHLKSSPYLKHVKSKLKNKLLPSFSEQLKDVQPINQF 1215
R + N S ++FS++ E ++F + G + + + D T L + E YVT R+I+ E + + + +Q EL++ +HPNI + + F I++ + V YGS D+I HF +G+ L + IL+ V+ AL+++H + VHR+VKASHIL+ DG V L+GLR + Q++ H FP + + +L W++PE+L+QNL GY SDIYS+GITA EL G +P+ + T++LL+KL G VP L D++TI +S S N+ L D L + S G S S + + FV+ CL +P RP A L + + K +K + L E L+ V PI F
Sbjct: 39 RRKTNDASSESIASFSKQ---EVMSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGE---YVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATF-IADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRRASEAL----PELLRPVTPITNF 403 The following BLAST results are available for this feature:
BLAST of TCONS_00003267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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