|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003266 ID=TCONS_00003266|Name=TCONS_00003266|organism=Clytia hemisphaerica|type=transcript|length=1298bp
Gctgggcccaaggcgccgagtatgcacccggcacagtgacaagccgttac
tagcaaccctgctgACCCTACCTCCCAATACCCCCGGAATCACggaatga
cggataggaaaaattatcggggaaaaaaattgctCGTCGCGCTCTGAGGA
ATCAGCGAAATCTGCTGCGAGCTGAGCTCTGCGTAATTCATTATGGCCTA
TGTGGTATACCACAGAATGTCGATGCTATATAAAAATCTGATAACATCAG
CCAAAGAAAGACTAGGAAGAGTGGTGATTGAGGACCAGGAATTtagcaaa
acaacaaaaagtaaTTGGGCATCAGAAACAAGAAGAATTGCAAGAGAGGA
ATCGGGTTACAATTACACATGGCAAGAGAATGCAAGAAAGAGCTCTGGAA
AAAGACAGTAAAGAGAAAAGTTGTGGAAGAGATCGAAAGAGAGCTAGATG
AGAACAAAATGAGAACGAAATGAGAACGATGAGGCATCAAAGCGGACAAA
GGTTTGAAAGAAAAGGATATATAAGGAAAATGGGATTAAAGGAAGCTAGT
GAAACAATGAGAAGGAGACTTGAAATGATTGATGTTGGTAACAATTTTGG
AAGGAAGAAAACATGCAGGCTATGTGAGGAAAAAGAAAGCACTGAACACC
TGATAGAATGTAGGAGAACAACAGCTCGCGTTGAATTGACAGTAACAAGC
TTGAAAAAAACTGGCTACCTGAATGTtataaaacaaacaaatcaatttct
aaatctacaaatagaaaaaagagagaaatgggaaaaagtcaaagaaaaat
tgtaaacaaaacaaaaggaaaaaaaggaaCAAATGTCTCGCACCTAATAC
TTGATTTAGCGGAAAATTGTCAACAAAGAGGACaatcaaaaatttcaaga
ttCAAGATTATTATAATTAGGACGAATTTCTTAAACTACTGAACGCGTaa
aaaaagtctcaaaagagacaaatgaaaatggtgcaggaaaacaaaaagct
aaaagctaaactaaaaattgaaaattatctaaaaacagaaaagatataca
aatgaaaatctcaattaaaaaaaaaacgaatacaTATGAAATAGAAATAA
TTATGAATAAATTAAATAATTATTTAGGTATATCAAAATGGAATCATAAA
GAtgaatgatgaaaaaaatcaacccTTATTATCACCAATTGAAACAAATA
TGGCGTTAATCCAAGGCGCCAAAAAGTCATAAGTGCCAACAATTAGGGCC
AATCATCATATATTCAtaaatCTACTTGGTTCAATTTTAAAGAGGCTT Run BLAST on NCBI protein sequence of TCONS_00003266-protein >TCONS_00003266-protein ID=TCONS_00003266-protein|Name=TCONS_00003266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MRTMRHQSGQRFERKGYIRKMGLKEASETMRRRLEMIDVGNNFGRKKTCR
LCEEKESTEHLIECRRTTARVELTVTSLKKTGYLNVIKQTNQFLNLQIEK
REKWEKVKEKL Run BLAST on NCBI transcript from alignment at sc0000026:265516..267349+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003266 ID=TCONS_00003266|Name=TCONS_00003266|organism=Clytia hemisphaerica|type=transcript|length=1834bp|location=Sequence derived from alignment at sc0000026:265516..267349+ (Clytia hemisphaerica)
Gctgggcccaaggcgccgagtatgcacccggcacagtgacaagccgttac
tagcaaccctgctgACCCTACCTCCCAATACCCCCGGAATCACggaatga
cggataggaaaaattatcggggaaaaaaattgctCGTCGCGCTCTGAGGA
ATCAGCGAAATCTGCTGCGAGCTGAGCTCTGCGTAATTCATTATGGCCTA
TGTGGTATACCACAGAATGTCGATGCTATATAAAAATCTGATAACATCAG
CCAAAGAAAGACTAGGAAGAGTGGTGATTGAGGACCAGGAATTtagcaaa
acaacaaaaagtaaTTGGGCATCAGAAACAAGAAGAATTGCAAGAGAGGA
ATCGGGTTACAATTACACATGGCAAGAGAATGCAAGAAAGAGCTCTGGAA
AAAGACAGTAAAGAGAAAAGTTGTGGAAGAGATCGAAAGAGAGCTAGATG
AGAACAAAATGAGAACGAAATGAGAACGATGAGGCATCAAAGCGGACAAA
GGTTTGAAAGAAAAGGATATATAAGGAAAATGGGATTAAAGGAAGCTAGT
GAAACAATGAGAAGGAGACTTGAAATGATTGATGTTGGTAACAATTTTGG
AAGGAAGAAAACATGCAGGCTATGTGAGGAAAAAGAAAGCACTGAACACC
TGATAGAATGTAGGAGAACAACAGCTCGCGTTGAATTGACAGTAACAAGC
TTGAAAAAAACTGGCTACCTGAATGTtataaaacaaacaaatcaatttct
aaatctacaaatagaaaaaagagagaaatgggaaaaagtcaaagaaaaat
tgtaaacaaaacaaaaggaaaaaaaggaaCAAATGTCTCGCACCTAATAC
TTGATTTAGCGGAAAATTGTCAACAAAGAGGACaatcaaaaatttcaaga
ttCAAGATTATTATAATTAGGACGAATTTCTTAAACTACTGAACGCGTaa
aaaaagtctcaaaagagacaaatgaaaatggtgcaggaaaacaaaaagct
aaaagctaaactaaaaattgaaaattatctaaaaacagaaaagatataca
aatgaaaatctcaattaaaaaaaaaacgaatacaTATGAAATAGAAATAA
TTATGAATAAATTAAATAATTATTTAGGTATATCAAAATGGAATCATAAA
GAtgaatgatgaaaaaaatcaacccTTATTATCACCAATTGAAACAAATA
TGGCGTTAATCCAAGGCGCCAAAAAGTCATAAGTGCCAACAATTAGGGCC
AATCATCATATATTCAGCaattactctaggggctgagttaggtcccgtat
gcgcatcggtgtatagtcatttttcttttgatcatgaaagtatagtcctt
gaagagtcagaaaacgtgtgtggcgttatttggatcaggcacaaatttcc
ataatggcggattttagattttcaaccctttttagccctcttgcttgaaa
aaaaaaatttttttgactttaaacatagacatattatataccaatcgatc
acaaattttatgctgattaagaaaaaggtcagaatcatggtctgaaaatt
tagttatctggagatatgaagcactttcgatttcgattttttgaaatgac
tacttttggttccagatttgcgtggctgtaacgtttgattggcttactta
atttacttgaaattttcggaggcttttgcctaccgttcaaataataaaat
tcaggaaaagttttctgactcttcaaggattatactttcatgatcaaaag
aaaaaatgactatacgccgatttGCATACGAGagctaactcagcccctag
agtaaatCTACTTGGTTCAATTTTAAAGAGGCTT Coding sequence (CDS) from alignment at sc0000026:265516..267349+ >TCONS_00003266 ID=TCONS_00003266|Name=TCONS_00003266|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000026:265516..267349+ (Clytia hemisphaerica)
ATGAGAACGATGAGGCATCAAAGCGGACAAAGGTTTGAAAGAAAAGGATA
TATAAGGAAAATGGGATTAAAGGAAGCTAGTGAAACAATGAGAAGGAGAC
TTGAAATGATTGATGTTGGTAACAATTTTGGAAGGAAGAAAACATGCAGG
CTATGTGAGGAAAAAGAAAGCACTGAACACCTGATAGAATGTAGGAGAAC
AACAGCTCGCGTTGAATTGACAGTAACAAGCTTGAAAAAAACTGGCTACC
TGAATGTtataaaacaaacaaatcaatttctaaatctacaaatagaaaaa
agagagaaatgggaaaaagtcaaagaaaaattgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003266-exon-sc0000026-1491911889:265516..266781 | TCONS_00003266-exon-sc0000026-1491911889:265516..266781 | Clytia hemisphaerica | exon |
| TCONS_00003266-exon-sc0000026-1510915933:265516..266781 | TCONS_00003266-exon-sc0000026-1510915933:265516..266781 | Clytia hemisphaerica | exon |
| TCONS_00003266-exon-sc0000026-1575043694:265516..266781 | TCONS_00003266-exon-sc0000026-1575043694:265516..266781 | Clytia hemisphaerica | exon |
| TCONS_00003266-exon-sc0000026-1491911889:267318..267349 | TCONS_00003266-exon-sc0000026-1491911889:267318..267349 | Clytia hemisphaerica | exon |
| TCONS_00003266-exon-sc0000026-1510915933:267318..267349 | TCONS_00003266-exon-sc0000026-1510915933:267318..267349 | Clytia hemisphaerica | exon |
| TCONS_00003266-exon-sc0000026-1575043694:267318..267349 | TCONS_00003266-exon-sc0000026-1575043694:267318..267349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:265516..267349 + |
Blast
The following BLAST results are available for this feature:
|
