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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003260 ID=TCONS_00003260|Name=TCONS_00003260|organism=Clytia hemisphaerica|type=transcript|length=3771bpRun BLAST on NCBI protein sequence of TCONS_00003260-protein >TCONS_00003260-protein ID=TCONS_00003260-protein|Name=TCONS_00003260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp MGRVVYKHGKELVTCYFVGFIILFGGTYLIYIIEKVGAETSTIDNMANGLRun BLAST on NCBI transcript from alignment at sc0000026:165921..192506+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003260 ID=TCONS_00003260|Name=TCONS_00003260|organism=Clytia hemisphaerica|type=transcript|length=26586bp|location=Sequence derived from alignment at sc0000026:165921..192506+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:165921..192506+ >TCONS_00003260 ID=TCONS_00003260|Name=TCONS_00003260|organism=Clytia hemisphaerica|type=CDS|length=1353bp|location=Sequence derived from alignment at sc0000026:165921..192506+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003260 vs. Swiss-Prot (Human)
Match: DPS1 (Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 1.619e-82 Identity = 128/244 (52.46%), Postives = 184/244 (75.41%), Query Frame = 1
Query: 475 IHTASLLHDDVIDEATERRNKPSVNHAFSQKEAILAGDFILSRSSILLAQLGNTKAVELFSYIINDLVKGELMQLFTKDNLNERFNHYLLKTYRKTASLIAYSCQSIALLGGSDDQIQDAMYNYGRNIGIAFQLVDDALDFVSTSDVLGKPAGADLSLGLATAPILFAAEKYPDLHGLIGRRFKHEGDVQQAFEMVHESDGVSETFMLARKYVDQATKDIAFLKDSEYKEALRVLGEMVITRDR 1206
IHTASL+HDDVID+A+ RR K +VN + +K+A+LAGD ILS +SI LA++GNT + + + +I DLV+GE +QL +K+N NERF HYL KT++KTASLIA SC+++++LG D + + Y YG+N+GIAFQL+DD LDF S SD +GKP ADL LGLAT P+LFA +++P+++ +I RRF GDV +A + V +SDGV +T LA++Y +A ++I+ L+ S ++AL L E+V+TRD+
Sbjct: 172 IHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERDALIQLSEIVLTRDK 415 HSP 2 Score: 101.293 bits (251), Expect = 2.321e-22 Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2
Query: 185 PAELTKNGITSLHQDICNELETQVPVLKGAAQYYFDGKGKLFRPMAVMLAGHACNIHLKQNGELTVGQKRVAMIAEMIHTASLLHDDVIDEATERR 472
P +L + L++DI EL LK ++YYFDGKGK FRP+ V L ACNIH + + Q+ +A+IAEMIHTASL+HDDVID+A+ RR
Sbjct: 95 PFKLGWRDLKGLYEDIRKELLISTSELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRR 190 The following BLAST results are available for this feature:
BLAST of TCONS_00003260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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