TCONS_00003259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003259
Unique NameTCONS_00003259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003259 ID=TCONS_00003259|Name=TCONS_00003259|organism=Clytia hemisphaerica|type=transcript|length=2238bp
AAATCAGCGTCCCAAGCAGTCATCTATGGTCTATCTTCCAAGATTTCTAC
TGATTGCTGATTGCATGATATGTTAAGGAATTAAGaaaatgtatAAAATA
TCTTTGGGATGCGGATGTAGGAGATTGAGATTCAAAAGAATTGTAAATAT
TCTCTATCAACATGAACGAACTCTTTCTTCAAGCAATGGATCCAAAAAAG
TTGACAAGAAATCGatGGCGGCAAGTCCAGCTGAACTGACAAAGAATGGT
ATAACCTCTCTTCACCAAGATATATGCAATGAATTGGAAACGCAAGTACC
TGTATTAAAAGGAGCAGCAcaatattattttgatggaaaaggaaaattat
ttcgACCGATGGCAGTAATGTTGGCTGGTCATGCATGTAACATACACCTG
AAACAAAATGGGGAATTGACAGTCGGTCAAAAGCGTGTTGCAATGATCGC
TGAGATGATCCACACAGCAAGCCTTTTGCACGATGACGTTATTGATGAAG
CTACTGAGAGACGAANATCCACACAGCAAGCCTTTTgcacgatgacgtca
ttgatgaAGCTACTGAGAGACGAAACAAGCCTAGTGTAAACCATGCCTTT
TCACAAAAAGAAGCCATCTTGGCTGGCGACTTCATACTTTCCAGGTCTTC
CATCCTGTTGGCGCAACTTGGGAATACAAAAGCTGTTGAGCTGTTCTCTT
ACATTATCAATGACCTTGTGAAAGGCGAACTGATGCAACTGTTTACaaaa
gacaatttaaatgaACGTTTCAATCACTATTTACTCAAGACATATCGTAA
AACTGCTTCCCTCATTGCCTATAGTTGCCAATCAATTGCTTTGTTGGGCG
GCAGTGATGACCAAATACAAGATGCTATGTATAATTATGGTAGGAACATT
GGCATCGCCTTTCAGCTTGTAGATGACGCATTAGATTTCGTTTCAACATC
AGACGTTCTTGGTAAACCAGCCGGAGCCGATCTTTCTCTTGGGTTGGCAA
CTGCACCTATACTATTCGCTGCTGAAAAGTATCCAGACCTGCATGGATTA
ATTGGACGAAGGTTCAAACATGAAGGTGATGTGCAACAAGCTTTTGAAAT
GGTCCATGAGAGTGATGGTGTTTCAGAAACATTCATGTTGGCGCGGAAAT
ACGTTGACCAAGCGACGAAAGacattgcttttttgaaagactCTGAATAT
AAAGAAGCGTTGAGGGTTCTTGGTGAAATGGTGATTACTAGAGATAGGTA
gcatagaaagtattttaaaagcCTTCAAATGCGCACTACACAGCACAGGT
ATTATTTGTGAGAATGTGATATATTTTCTGTTTGGTTTGTGCTTTGTTTC
TGCATGCTTAAGTTTGTGTAGATTTTTCTTGCTATTCCTCCCTTATCGTT
CATTTATCTTTGTTTGCATTGCGATATTCCATGCACGGTATTGTTCGCAC
GCATGTGAAACACATCAAGATCGGAATGCTCGTGTATCCCACACCTTACT
TACTTAGTGTCATGCCCAGGTTTTCTAGGAAGTATTGTCAGTTTTTATTT
TGCACGCACGTTTAAAAGTTGAAGTAACCAGAATCGAACGGTAGAATATC
CTTTTGTTATTTGGTGTCTGGCAATGAATGGAGATGACTACAGATGCTTT
GGGTGAAGCGCATCAAGAGATGAATAATGGACTCGAGaaataattgaaat
aataaCCATTCGTTAATTATTGGTGTATTTCCACAATCCAAATTATTACA
GTCTTGGATAACCAAATATCCTTCAAGTTCAAATTAATATTCAATATGGG
GTTACCAGATTTCAAGCGGATGCAATATGTCGCTCTACCTAATGGAAAGA
ACTATTAACAGAATAAGTTTGACAAACAATCGGAGATCTCATCACTGGTG
CAGTTGAATATTACATAGAAACAACGAATGAATGAACAATTATCCAAGTC
TATACCCTTGAACCCTGTTGAAGaattgttcaaaatatttatcgTCACAC
GCGTATGGTTATGTGATGTAGTTTGGTTAGCTTGATTTGAATCGTTTTGT
ACACTCTGtttcatgaattttaaaaaataattttattttatttttcaaga
attttttcgaATATAATTTAGTTTTTATCACAGCCAtagtttgtataaaa
aatactcaaaaagtgACTCGAATACAAGCCTTGCCCTTTTCCTTAATTGT
TGTTGAACCTGGAAACTTCCATTATGGCTGAAATTTAC
Run BLAST on NCBI

transcript from alignment at sc0000026:165879..178382+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003259 ID=TCONS_00003259|Name=TCONS_00003259|organism=Clytia hemisphaerica|type=transcript|length=12504bp|location=Sequence derived from alignment at sc0000026:165879..178382+ (Clytia hemisphaerica)
AAATCAGCGTCCCAAGCAGTCATCTATGGTCTATCTTCCAAGATTTCTAC
TGATTGCTGATTGCATGATATGTTAAGGAATTAAGGTATGTActtcattc
attcaaaattaaaaagtttggaCTTTGATTtaccaaattcaatttttggt
tGTTTGGGTTGGATACTGTTGGATACCAGTCAGTATAGtcacgaccctgc
ctatgctagccattccgggtttgcttgttttttatttgacgcttatcaaa
atcttcaattttaggtcaaactttgacaagcaattgttctttgtgtagtt
gagctaNcattaggaggtgtatgacccctcattttttttcttttttgaag
ctctacagatgaactaggtttgattgccaccagaatagtttcaatttgag
cCTGGAATGGCtacctatgccccggacagtccggggcaaatgtctggggt
ctgaaaaaaactttttccccggacctaccgccataaatttaccccggacg
aattagaaaaaagcccgcgcggtcagcgattctataaaaagcgaacgcgc
gggctgtctggggcgtccggggtagtctctcaaaaacaaataatacggac
cccgggcacgcatcaaaaaaaccccggactgtccgggNagccatttttag
aaaaattagatctgcgggacacaaaaaatttcacaactcaactttgattt
caaagcgctgcggaggaaaaaatgttcagacagtgaaactttccatattt
atcagaaaatacctgagaaatccaatggtgctacTCTCTGAAANaccccg
gactgtccggggcataggcagggtcgtgtATAGTCCAGGAGCACATTTGT
TAGACACACAGAGACACAATACCAGACGTAGTATGGAGACGATACtttgt
tacaaaaatatttctatcctgtcaaaatcccaacaacttcactgaaatac
agagtatggaattattgacttaattcaaatcacttcaaatcacaaaagaa
aaaaccgttatcttttcaaaacaatttaaaagctcgcgccacttcttgaa
acaatagagctgtttgacgtcatacttttgtttatcaaatcataacaata
aaatatcagccaatcaaattctgcgatTGATTCTTGCATCAAATTTAACT
gttgacaaattcaaaaatgcACTTGACAAACACTTGCAAAAAATTCCCGA
TGAACCCCAAATCCGTGGTTATACAGGGTGCAGGAGAGTTGACTCAAACT
caattttagacatgaaatcTCTCTGCTGATCCATTTCTTCCTTCAGGAAT
TATGAATTGAATGAAGATTGTGGTGTGGATCAAAAGATTTTTGCCAAAGT
GGTACGCTCAAACAccgacggtgtcaatcgaacaattcttcgaacaaaaa
tcgcaatcaaaccaatcgaacgtaatcgaacgcgattgaataattgcgat
tcgattgtcgaacgtaatcgaatctcaatcgaatggctgatttctgggta
atattcaattgtgttcgattgcgattgagtaaggttagattggttcgatt
gatagttgactatgttcaattagttcgattgattgtcaattacattcgat
taaTCTTCAATTTCGTTcaattacgattatgttcgatgagtttgattgca
attaaattaatttggatcactctgttagagctatTTAGCGTAGCTTTACC
GAGCGTTTAAGTGCCGTACGAAAACGAAtgaaatctaatacaattgaatc
aatcgaacatgATTCaggtgcgtttggtttgggaacgcgaaacacgaacg
caaactacccatgtctaaacttttcaatatatctccagaactaacagatt
tttttaaattctgtaaaaaggtctaaatTCCTGAATAGTTTATACTATGT
TCAatgaaaaaatcataagcaacagtcaaatactcgttcatctatttaag
attgaagacaaaaatttcgaagaaaaataaaccttgagcacaaaaaatgc
ttttttaaacacttttttccaccgaaaaacaaataacttttacagactta
ccttccccaaatattgaagaagcctctactaattaaagtaatacaatcaa
acataatcgaagCAATCGCACGGCAAATCCtgagtaatattcgattgcaa
ttcgattgcgtttgacaatcgaattgcaattattcgattgtgttcaattg
tgttcaattgattcggtgttcgattcgttcgattgacaccgtctggacaa
AACCATTTCAACCCTCCAGCTACTATACAatggcccctaaggctcaccac
gcacttccagttcttataaaatttgtgaactataactgtctagggtcatg
gcccagaaggctcacgagacactgcgcacttccaaGTTTTTTTGTGACAA
CACTGTGCacttcgaaaaaaatatcaatcgtaaacaaaggaattgctaga
ttcctTCCGTCGGCCGAGTGCCCGACGACTATTGCAGTACTGGGAAATTG
ACTCACTACTTTAGAAAGAGGGATAGAGGGTAAGGTTTTTTAAAAAGTGG
CTGAAtcagtttttcttgaaaattttttttggccataaaatttgattatt
cttatttggggaaattcccctttgtcatttttagggaaaatcaggggggg
gtcttgcagttattatataaacactatgacaattactaccgtggtggtat
ataaaccaaaatttgggaaaacagttactccaccagtggactaactgcaa
catgggtggtgcctaagcccaaaattgttgattttggtagcatatggtgt
actaagtgagcacatttttcaatttttcacttaaaattttaggtttttaa
aaattctggaagcaaaagaatttaaaagatttttttcaaaagtaaaaaaa
aatcacaaaatttttcttcaatcaaggcatgaaagatattttaacaaact
tggaaaatgattgagatatttaactcttgaacagttgttaataagacgta
cccagtaaaatggtatcaaaaatgaggaattcagtgaaaaaattgccaaa
tttggcatttttgggggtggtatacaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCCCCCCCTGGGAAAATGTGCATTTCTCGTGactttccttttt
atttttatgattttttttttacaatgatTTAAAATGGTAatgtttaaaat
ctgatggagCGAGATTTCGCAAAATTAATTTGTTGGGCAATTTTGGGCCA
AACAGGCCAAAAAGTGCGcaaaaatggggttatttggaCTTTCTGTGAAA
TCACTTTGTAAgatttttctagttttttaCACAGTTATTCAAAATGGTAA
TCCTTAGAATGTTTGacttaatttttgcctgggacctaaacccaggctga
cgctttGTTCAAATCCTGTGTTTTAtagcgatctgattggatgaaataCC
ATTTGAACTGGAACAGAAATTAATCCAAAAAATAATCGCAGCAAGAAAAT
ATACCTTTTTGCTTTAGATGAAAGGTGGTAAATCTTGGTTGGATTTAAAG
TTTTCTCTTATCTTTTCTAATTGACTTCAATTAGTAGAAGCTTCTTAATG
TTTGGGTAAAGGTgagtctataaaagttatttatttttcgttagaagaaa
ttgtttaaaaaaagcattttttgttctcaaggtttgttttttccacaaat
ttttcaatcttaaaAATAGAAGAACAAGTAATTCATTAATGATTATGATT
TCTTCACTAATGGTTATTATTTCTTCACAGAACTTAGTAAAACTATTTAA
GAGTCTGaactttttaacaaaatttcaaaaagtttgttagcTCTGGAGAT
AtcttgaaaagtttagacattaGTAGTTTGCATTTCCGAACCAAATGGCC
GTGCTTGATGGTGCTGTTagtttcttcttctttatttttgttttgaggag
gGCAAGTTGGGGAAAGTTGAAATTGGTATCAAGATTTAGCTCATGAAAGC
TGTCATTCATATTTACAAACTTTAAAGAACCACAACTTGCAATCAATCAA
TTGTTTGTTCCAAACTAAACACCAGTGATggaaccatagtataagaaagc
cgcagCTGGAATaagtaccgcattgtcttttcagctAATTgatgttccat
ctctgtctccgagctttataagaacatcaagatgatcagtttgttattgg
tagatagtttttgattttgttctcttattttccttcacaaaaagtttttt
gttgctagatatctttgaatctgtacccaatagaacacttgaactaattt
tggacatattttaggggtattttgtggaaacaatagtttttcgNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctatattc
aagatgacaactttcctgtcagtttaaatgataaattttgaaggtgctgg
cttgaaattttcacagtattatcttgatttactttttcattgatttctaa
aaagatttcactgaaatattccGAAGGCATTTCGAAGCACCTcgttaatt
tttgagttctttcagcccagccattttgtgcgtgtttaaatttcttagtg
tTGATTTTTCTTTGCAATGACTTTATAATGCAAGTATATTATCAAGAGTA
TATCATTAATGTTTAAAACgtactgagaagtaagtattaacgacaaacca
ataaaatttaccattaaagatgctacattactgatttcttgatcaacaaa
taatcatcaaatacgacagagatagaacaacagaaattcagatgttatca
ttccagccgcggctttcttatactatgatggAACACAGTGACATAAAAAT
TTAAACGCATTGAACTGATCTACTATTAGGCTATGGTGTGGAGTCATTAC
ATAATGTTTTTCCGGCTTGTTATAATTATTAGTTGAAATGGTATTGTGTT
TAGCAACTGAGATTACCAGGTTGTCTAAAAATCACGTCTTTCATTTTTAG
TGATTACTAGACTACTTTCAAGCCCTCTCTATTTTCGGGTCATCTTCAGG
CCAAAATAGGAAAACATTCTTTGGGtatttaaatttgaatttcagtTTAA
GCACAAGGCGAATAACTAAGTTACTGACCGGCATTACTTGTGATTGATTC
AATTATTATTCCGATTTTGAGTTTAATTTTTAGATCCATTGAATTATCAC
ttgttcttttttagaaaatgtatAAAATATCTTTGGGATGCGGATGTAGG
AGATTGAGATTCAAAAGAATTGTAAATATTCTCTATCAACATGAACGAAC
TCTTTCTTCAAGCAATGGATCCAAAAAAGTTGACAAGAAATCGatgtaaa
cttttttcttttatttctttataGTTTAATATCTACACAGCTCCTTAAAA
GGGCTTAAAATCAGTACTTCATAgccttttatgaaatttgaggcTGGAAT
TGTACCTTATGGTCCTCAGAATCAGTCAAAATTAAGCCAAATAAAAAGAA
GGAGTGTCTTAGGCATGAATCCAATATGTGGGTAGGTTAGATGTTATATC
AATCAAATCATGGCTCCGAGCATGAAGAGTATATAATatagaaaatctga
aaaactcTGAAAATTCATACTGATTGATATGATAATTAAACATCGTAGTC
GCGGGACAAGCTttgagatccatgctatgatttcttctttatcTACCGAT
GGCGAAATTAATAGCATGTTTTGGGCTATgtttgaaaacacagccaatca
aatcttGTTTTACTTCCATTGGTCGCACTTCTCTTAGAAAAACGCAATTT
TCTAAAGATTTTTATCTTAGTGAgtacagcgctaaattcgataTTTTCAA
CTGTTATTTTTTTGATGCAGAAAGCTGCCTCACAGATTGAACCCCCGTCC
TGTAAACACTAGATTTTTAAAATACAGGGCAAGTCTCAGCTCAAAGTGAA
TTCGATTGCACTTTCTCTAATACAAAAGAGGTCGAAGAAGTAGAGATGCA
TGTTATGCGCACTAAAGAGTTCTATTAAAGATAAGTAGCCAAACTGGAAT
GAAAAATACGGTTCATTTTCAACTTATGTAGGATTTTTATCATTATAGGG
CGGCAAGTCCAGCTGAACTGACAAAGAATGGTATAACCTCTCTTCACCAA
GATATATGCAATGTAAAGCTTTTTCTTCCGTTTTGAATTCATTTACTCAC
CagggaaaaaaatctgtatattaATAGCCATGGTTTTTCGTTTTTGGAAT
GTTATTTTAAAAGATGATTTTGAGCTAaaagagcctggtttagacttcgT
TCAGCGTTTGCATGAGATTAAAGATCTACATTAAGCAATTTTGATTTCTG
ACTTAGCTTGCCTGGCCTATGTATAAAAGATTAACTATCCTTTTCATCGG
GGAATATGTTGGCAAAATATCTTTGCTTTTTTATATCCATATTGGAAATC
GTCAGTATTACTGTGGACTACAAGAAATGGTTCGTTGAGCTGTGGACTAC
CTttacagtgctgcaaataagcgCCGGTTATTggtcaatgtccgactgaa
acggccatttgaccgactgaaaacCTTTTGTCTCGACcatgatgtccgaa
tgaaaaGATGAATAAAACCGTTAACTTGATTTGAGAGCAAATCTTCTGTA
CATCCCTGCCTCTTAAACTCTATTCTCTATTATTTTACAAATGcctcttc
gtaacttttaagagtgtttcttaAGTTCTCTTTTATCGAATCGCTTTCTC
TGTTACTTTTAgaagtgtttctaagatcacgtttatcaaatcgctttctt
cgttacttttaAGAGTGCTAGTTGAAAAATTATGACGACTGGATGACCGA
GAGGATTTTGAGTTTGGCCGACTAGATTTGATTTCGGTCGGACACAATGT
TCGAGtgaccaaaaatatttatttgcagccctgcttTACTAGTGATATAA
AGCACTTTCACCTTGACTCTGAGCTtgtcttttgaaaatgattttgttaT
AAAGGTATTAGATTTTCCTTTTCAACACAGGAATTGGAAACGCAAGTACC
TGTATTAAAAGGAGCAGCAcaatattattttgatggaaaaggaaaattat
ttcgACCGATGGCAGTAATGTTGGCTGGTCATGCATGTAACATACACCTG
AAACAAAATGGGTAAGCTCACtgttgtttgaaatatttttgattctCTCA
GCCGCTTATTTTCAAAGGTTGATTGGCATTTGTAATGTAAATTTTATACA
TGATTGAAAACTTTGTCAATTTACGTGACATTTTGTTATTTTCGCTGACT
TATTCTTCCCCTGTAAGGTACTCTACCAAATTATATTCTTATTTTAACTA
AACATTTTGGAGTTTAACATCAAATAATAACATCCTTCTCTTTTTCAGGG
AATTGACAGTCGGTCAAAAGCGTGTTGCAATGATCGCTGAGATGATCCAC
ACAGCAAGCCTTTTGCACGATGACGTTATTGATGAAGCTACTGAGAGACG
AANATCCACACAGCAAGCCTTTTgcacgatgacgtcattgatgaAGCTAC
TGAGAGACGAAACAAGCCTAGTGTAAACCATGCCTTTTCACAAAAAGAAG
CCATCTTGGCTGGCGACTTCATACTTTCCAGGTCTTCCATCCTGTTGGCG
CAACTTGGGAATACAAAAGCTGTTGAGCTGTTCTCTTACATTATCAATGA
CCTTGTGAAAGGTAATAACTTGTGGCCCATTCATTGAAACCTTATTATTA
ttgtaatcgtcagccgtgcaaaattactcaaatctgattggtttagagga
gtgcaattaatcgttaattgcactattaccactttttgcactcttcggcg
gggggacacttttgtccccttattcttttctctccagagactttttttta
ttatataataaaaacaaagacattttttttcttcaatataaaaaaagaac
aaagaaattttacgttacaatagcttcttttaattgaaaagaaagaaaaa
ttacactgcaatgttttctttttaaacaaaagaaaaaaaggaggttttcg
aatgtttacaaaaatataaaagttagaaaaagattctttttcaaaacNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTGCACttgtccttcggactcgtgcaaattactattttctcctttgt
tactcgtgattaatcgttaattgcactccaaaccatacgattactagtac
aaatacACATTCATGAAAAGGTAAACCctccttaagaaaggggggctCAC
AATAATGAGGTGATGAGTTTTGAAACTTCTTATTATATTAGTGAAATACA
CATTCATGAAAAGGTAAACCCTCCTTAAATGAAGGGGTTCACAATATGAG
GTGATGAGTTTTGAAACTTCTTATTATATATagtatatatatattatata
tattagtGAAACATACAGAAATgatgttttttcgtttttaccaaaataca
ataacaaaataatttttcttctttggtaTGTAATAAACActaaaagtctt
gaaaaatttatgttttgaagACATACATTACTACATTTAGTACATTGCTA
GTGCTTTTTACATTACAGGCGAACTGATGCAACTGTTTACaaaagacaat
ttaaatgaACGTTTCAATCACTATTTACTCAAGACATATCGTAAAACTGC
TTCCCTCATTGCCTATAGTTGCCAATCAGTAAGTACCCTCATTTTGATCA
ATTTGGCAATACCTGAACTTCCTGCTAACAAAAGTAAGTAAAGTAAGTCT
GCAactgaaggctcctctttcgatagctatctacccgaaagtagtggagg
gcgccactctttctccctttATTGCTCCACTTaaccttgatccttctctt
aattgctgagcatcaagcagagaggcatcaagtaccattttcggaatttt
tggtatgacccggctgggggttgaacccacaaccttgcgaacagtagtcg
gatgctctaccactgcactacggtcgctttcTTACAAATACTAGGTTATT
GTGTGTAAATGGCTTTGTTGAAGTCTCACTCACTCCTCCTTCGTTGGCAT
TTGTTAGAGACCTTGGTAAGAGCAAATTTCATTGCgatgttttcttttct
taaaatgttGTCATTTAATTTGTCCATCTCATAGATTGCTTTGTTGGGCG
GCAGTGATGACCAAATACAAGATGCTATGTATAATTATGGTAGGAACATT
GGCATCGCCTTTCAGGTAAGCCCTATTtgtaaaaaatcaagatttttgtc
TAACTATCTTAACTCCGGAAACTGGGGTGATAGAGCAGCATATGATTTTC
CTCCTTGTTGGTAGCACCGTGTACTTCACCCTGACTAGCCAGCATCTCTA
ACCACAGAATTGTTTGTTGTTCAAACTGAGACGAAAAGAGGACAGGATGG
AAATGCCCTACGGAAAAGGCACTAAGCATGGCACATCTATTAATATTATT
CACTTGAATTCACTTCCTAAAAAACTTAGTCTGTCGCTGTTATCTGTCTG
TCTATCGCTCAGAAATCTTTAGCTAGATAGTTTGAGTAAGTGAAAAATAA
AGCTTCAATAAAAAACCTCCCTATTTTAGCTTGTAGATGACGCATTAGAT
TTCGTTTCAACATCAGACGTTCTTGGTAAACCAGCCGGAGCCGATCTTTC
TCTTGGGTTGGCAACTGCACCTATACTATTCGCTGCTGAAAAGGTATTAT
TAATGAGTATTCCACGTACCATAATTGATCGTCTGTTGCGtgatgaaaaa
agtaaaacagaTTTGTCGCTATTTATAACAATATTTTGCGATAACCACGC
AGTAACAAAAATACCTCATTCACTCTTAAGAGGTAGATTCTAACAACACA
CATCTACATTTTTCCACATATTTTGTATAACAAAGTTTTCTTTATCATTC
TCCATAGTATCCAGACCTGCATGGATTAATTGGACGAAGGTTCAAACATG
AAGGTGATGTGCAACAAGCTTTTGAAATGGTCCATGAGGTATGATAAACA
TTTTCTCAAGATGATCTACAATGTTCTTTGTAATATTTGAGACTGCACAA
AATACCATACTTCATGGTATTAACACCTCTGAAAAAATTTGGgcctgaaa
ataaatttgatcaTCTCTTAGCTTTATAGAAAGAGTAGAGGAGTTTAAAA
ATTAGAAatccaaatatctcaaaatattatcattcttaTCGGATCGCGTA
CCCTCTCTCAAGAAAGTCTCAGGATGCACTCTTCTCCCAAATGAACCAAA
TTGTTGTCATTGGGGCTAAGAAATGGTCCCTTACTATACAGGGAACTTTT
CGTCGTATACCCACTTAACAGGTTCCTATTAATTAGTTATATGCGTACGt
cttattttgttattgtcaCACAGTTAACTATTTTCTCGATTATCAAATGG
AATAAGCTGTCCAGGTCGACAGTTCCAATCTTTGATCCAAGATTAACCTT
AACCCCTAATCttcttatttatcaaaaaaaattcatcaaatattTTGAGG
TGGAAAAGGTCATGCGAGGGGAttttcctggatttgatgaactTCTATGA
CCTTCTTAATTTATTATGTCCGTAGGTTCTTGACGAATTGACACGCCTTA
TAATTGCCGAACCTTTTGTGTTTTGGTGTGTTACAAACTTTTTTGAGCAA
ATCTGTTCGGCTTAATTATGGTATTGATTGATTgagaaatcaaatttcaa
atttcaataacaATTGTTTTTTTCAGAGTGATGGTGTTTCAGAAACATTC
ATGTTGGCGCGGAAATACGTTGACCAAGCGACGAAAGacattgctttttt
gaaagactCTGAATATAAAGAAGCGTTGAGGGTTCTTGGTGAAATGGTGA
TTACTAGAGATAGGTAgcatagaaagtattttaaaagcCTTCAAATGCGC
ACTACACAGCACAGGTATTATTTGTGAGAATGTGATATATTTTCTGTTTG
GTTTGTGCTTTGTTTCTGCATGCTTAAGTTTGTGTAGATTTTTCTTGCTA
TTCCTCCCTTATCGTTCATTTATCTTTGTTTGCATTGCGATATTCCATGC
ACGGTATTGTTCGCACGCATGTGAAACACATCAAGATCGGAATGCTCGTG
TATCCCACACCTTACTTACTTAGTGTCATGCCCAGGTTTTCTAGGAAGTA
TTGTCAGTTTTTATTTTGCACGCACGTTTAAAAGTTGAAGTAACCAGAAT
CGAACGGTAGAATATCCTTTTGTTATTTGGTGTCTGGCAATGAATGGAGA
TGACTACAGATGCTTTGGGTGAAGCGCATCAAGAGATGAATAATGGACTC
GAGaaataattgaaataataaCCATTCGTTAATTATTGGTGTATTTCCAC
AATCCAAATTATTACAGTCTTGGATAACCAAATATCCTTCAAGTTCAAAT
TAATATTCAATATGGGGTTACCAGATTTCAAGCGGATGCAATATGTCGCT
CTACCTAATGGAAAGAACTATTAACAGAATAAGTTTGACAAACAATCGGA
GATCTCATCACTGGTGCAGTTGAATATTACATAGAAACAACGAATGAATG
AACAATTATCCAAGTCTATACCCTTGAACCCTGTTGAAGaattgttcaaa
atatttatcgTCACACGCGTATGGTTATGTGATGTAGTTTGGTTAGCTTG
ATTTGAATCGTTTTGTACACTCTGtttcatgaattttaaaaaataatttt
attttatttttcaagaattttttcgaATATAATTTAGTTTTTATCACAGC
CAtagtttgtataaaaaatactcaaaaagtgACTCGAATACAAGCCTTGC
CCTTTTCCTTAATTGTTGTTGAACCTGGAAACTTCCATTATGGCTGAAAT
TTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001816XLOC_001816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003259-exon-sc0000026-1491911889:165879..165963TCONS_00003259-exon-sc0000026-1491911889:165879..165963Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:165879..165963TCONS_00003259-exon-sc0000026-1510915933:165879..165963Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:165879..165963TCONS_00003259-exon-sc0000026-1575043694:165879..165963Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:171443..171573TCONS_00003259-exon-sc0000026-1491911889:171443..171573Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:171443..171573TCONS_00003259-exon-sc0000026-1510915933:171443..171573Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:171443..171573TCONS_00003259-exon-sc0000026-1575043694:171443..171573Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:172327..172390TCONS_00003259-exon-sc0000026-1491911889:172327..172390Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:172327..172390TCONS_00003259-exon-sc0000026-1510915933:172327..172390Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:172327..172390TCONS_00003259-exon-sc0000026-1575043694:172327..172390Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:173259..173389TCONS_00003259-exon-sc0000026-1491911889:173259..173389Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:173259..173389TCONS_00003259-exon-sc0000026-1510915933:173259..173389Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:173259..173389TCONS_00003259-exon-sc0000026-1575043694:173259..173389Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:173627..173939TCONS_00003259-exon-sc0000026-1491911889:173627..173939Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:173627..173939TCONS_00003259-exon-sc0000026-1510915933:173627..173939Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:173627..173939TCONS_00003259-exon-sc0000026-1575043694:173627..173939Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:175097..175206TCONS_00003259-exon-sc0000026-1491911889:175097..175206Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:175097..175206TCONS_00003259-exon-sc0000026-1510915933:175097..175206Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:175097..175206TCONS_00003259-exon-sc0000026-1575043694:175097..175206Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:175663..175743TCONS_00003259-exon-sc0000026-1491911889:175663..175743Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:175663..175743TCONS_00003259-exon-sc0000026-1510915933:175663..175743Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:175663..175743TCONS_00003259-exon-sc0000026-1575043694:175663..175743Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:176108..176221TCONS_00003259-exon-sc0000026-1491911889:176108..176221Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:176108..176221TCONS_00003259-exon-sc0000026-1510915933:176108..176221Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:176108..176221TCONS_00003259-exon-sc0000026-1575043694:176108..176221Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:176436..176516TCONS_00003259-exon-sc0000026-1491911889:176436..176516Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:176436..176516TCONS_00003259-exon-sc0000026-1510915933:176436..176516Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:176436..176516TCONS_00003259-exon-sc0000026-1575043694:176436..176516Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1491911889:177255..178382TCONS_00003259-exon-sc0000026-1491911889:177255..178382Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1510915933:177255..178382TCONS_00003259-exon-sc0000026-1510915933:177255..178382Clytia hemisphaericaexon
TCONS_00003259-exon-sc0000026-1575043694:177255..178382TCONS_00003259-exon-sc0000026-1575043694:177255..178382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:165879..178382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.245	12.9858	5.07564	3.84354	22.3347	16.5663	20.9592	22.1943	19.9489	19.1043	17.9828	18.4649	14.389	16.6965	13.4272	13.5914	27.7054	26.3834	8.4668	10.4514	24.2274	23.8844	26.7424	24.4344	14.2672	16.4503	11.7692	9.40492	19.4123	21.9247
Blast
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BLAST of TCONS_00003259 vs. Swiss-Prot (Human)
Match: DPS1 (Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.738e-85
Identity = 128/244 (52.46%), Postives = 184/244 (75.41%), Query Frame = 1 
Query:  517 IHTASLLHDDVIDEATERRNKPSVNHAFSQKEAILAGDFILSRSSILLAQLGNTKAVELFSYIINDLVKGELMQLFTKDNLNERFNHYLLKTYRKTASLIAYSCQSIALLGGSDDQIQDAMYNYGRNIGIAFQLVDDALDFVSTSDVLGKPAGADLSLGLATAPILFAAEKYPDLHGLIGRRFKHEGDVQQAFEMVHESDGVSETFMLARKYVDQATKDIAFLKDSEYKEALRVLGEMVITRDR 1248
            IHTASL+HDDVID+A+ RR K +VN  + +K+A+LAGD ILS +SI LA++GNT  + + + +I DLV+GE +QL +K+N NERF HYL KT++KTASLIA SC+++++LG  D  + +  Y YG+N+GIAFQL+DD LDF S SD +GKP  ADL LGLAT P+LFA +++P+++ +I RRF   GDV +A + V +SDGV +T  LA++Y  +A ++I+ L+ S  ++AL  L E+V+TRD+
Sbjct:  172 IHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERDALIQLSEIVLTRDK 415

HSP 2 Score: 101.293 bits (251), Expect = 1.037e-22
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2 
Query:  227 PAELTKNGITSLHQDICNELETQVPVLKGAAQYYFDGKGKLFRPMAVMLAGHACNIHLKQNGELTVGQKRVAMIAEMIHTASLLHDDVIDEATERR 514
            P +L    +  L++DI  EL      LK  ++YYFDGKGK FRP+ V L   ACNIH   +  +   Q+ +A+IAEMIHTASL+HDDVID+A+ RR
Sbjct:   95 PFKLGWRDLKGLYEDIRKELLISTSELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRR 190
The following BLAST results are available for this feature:
BLAST of TCONS_00003259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPS18.738e-8552.46Decaprenyl-diphosphate synthase subunit 1 OS=Homo ... [more]
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