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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003253 ID=TCONS_00003253|Name=TCONS_00003253|organism=Clytia hemisphaerica|type=transcript|length=959bp
ctAAAAACAATGGATAAAGAAATTACATTGAAACTCGTCATGTACGAAAA
TGGATCAGCATACTTTTGTAGCAGACTCAATTGAAAAATTCTGTAAAGGC
GATATACCTCATGATTTTATCTTCCGTTACCCATACAAAACGAAAGGTCA
AGTCAACGATGTTATTGTTTGGGATCCTAGAATAATTGAACCGACATGCA
CTATTTTCTGCCCAAAGTGCAAAGACAATGTATTGACTGATAATCGAtgg
aaaaatggtgaaaaatctTACGAAGGACCGCGCAAGCTGTATGGAGTTAC
TCAAGATGCACTTCTTGTATCCAGAGTCTATCTTTGTAGAAACAACCATC
AATCGATTGCACATGACCAAGGAATTTTGGAGCAATGTATTTTTATAGAC
ACCTTCCCGTTTcatctttttttcaaatgcgGGATAACAAAAGAGCTTTA
TGATTTCATTATAACACATTTTGACGTTGGTTTGTCTCCATCAGATATCC
AAGTACTATGGCAGCAAACACAATTTAACCACTTTACAAGCATAcgtgat
gaaaaagaaaataactttgaaaataagggattaCACTTGGCATTGAAAAT
CATCAATTCCTGCATTatcgaaagattttttaaatgggAGTCATTATACA
CCGTTAAAATGACGCAGACCACTGCAACATCATCTATATCTTGCGATCAT
ACTTTTAAAGTATCAGCAAATATCGGATTATACATTGACGGTAGCTGGGT
TAAGATTTGTGATAATCTATTTGTTGTTCTAAACGAAAAAGgaGATGTTT
TAGCATGGCAACTAGGACTAGGTGTTGCTTTTGATAACGTGAAAGAAATC
CTTTCTGCGCTGAAAGATCGGTTAAAACGACAAGAAAGTACCATGAAAAT
GATATTAATTGACAACTGCTGTCAATGGAGGTCGAAGCTTGAAAGTGTAT
TCGGTGATA Run BLAST on NCBI protein sequence of TCONS_00003253-protein >TCONS_00003253-protein ID=TCONS_00003253-protein|Name=TCONS_00003253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MDQHTFVADSIEKFCKGDIPHDFIFRYPYKTKGQVNDVIVWDPRIIEPTC
TIFCPKCKDNVLTDNRWKNGEKSYEGPRKLYGVTQDALLVSRVYLCRNNH
QSIAHDQGILEQCIFIDTFPFHLFFKCGITKELYDFIITHFDVGLSPSDI
QVLWQQTQFNHFTSIRDEKENNFENKGLHLALKIINSCIIERFFKWESLY
TVKMTQTTATSSISCDHTFKVSANIGLYIDGSWVKICDNLFVVLNEKGDV
LAWQLGLGVAFDNVKEILSALKDRLKRQESTMKMILIDNCCQWRSKLESV
FGD Run BLAST on NCBI transcript from alignment at sc0000026:65636..67934+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003253 ID=TCONS_00003253|Name=TCONS_00003253|organism=Clytia hemisphaerica|type=transcript|length=2299bp|location=Sequence derived from alignment at sc0000026:65636..67934+ (Clytia hemisphaerica)
ctAAAAACAATGGATAAAGAAATTACATTGAAACTCGTCATGTACGAAAA
TGGATCAGCATACTTTTGTAGCAGACTCAATTGAAAAATTCTGTAAAGGC
GATATACCTCATGATTTTATCTTCCGTTACCCATACAAAACGAAAGGTCA
AGTCAACGATGTTATTGTTTGGGATCCTAGAATAATTGAACCGACATGCA
CTATTTTCTGCCCAAAGTGCAAAGACAATGTATTGACTGATAATCGAtgg
aaaaatggtgaaaaatctTACGAAGGACCGCGCAAGCTGTATGGAGTTAC
TCAAGATGCACTTCTTGTATCCAGAGTCTATCTTTGTAGAAACAACCATC
AATCGATTGCACATGACCAAGGAATTTTGGAGCAATGTATTTTTATAGAC
ACCTTCCCGTTTcatctttttttcaaatgcgGGATAACAAAAGAGCTTTA
TGATTTCATTATAACACATTTTGACGTTGGTTTGTCTCCATCAGATATCC
AAGTACTATGGCAGCAAACACAATTTAACCACTTTACAAGCATAcgtgat
gaaaaagaaaataactttgaaaataagggattaCACTTGGCATTGAAAAT
CATCAATTCCTGCATTatcgaaagattttttaaatgggAGTCATTATACA
CCGTTAAAATGACGCAGACCACTGCAACATCATCTATATCTTGCGATCAT
ACTTTTAAAGTATCAGCAAATATCGGATTATACATTGACGGTAGCTGGGT
TAAGATTTGTGATAATCTATTTGTTGTTCTAAACGAAAAAGGTATatgtt
ttaatgaaatttaactgCCTTATCggcggccctttttacgccggccctta
ttacaccAAACGCTAAAAAATAACGcaaataagggccggtgtaaaaagta
CTGTCTTCTcagatttttcttccttttatacTGTTTTTAATTATCATTTC
GAATGAAATTGACACGTTCCATCCAAAgagaaactcaaaaaaattaaaaa
atatttttgaaaacaacaaGAGTGCAGTTccacaggatgcaattaacgat
taattgtaTCAaaatcagttagggtcagggttggagcacAAAACAAGCTC
ATATGAAGTGGAGAAGACTAGATAAAACTATTACTGTCTAGTGTACCTTA
TCGGccttttttacgccggccctaattggcgttatttttgagCGTTtggc
gttaaaagggccggtgtaaaaagcgCCACAAAATTGTAACTTTTAGTCTC
GAGCGGCGTTATTTTTGGACCATTTCTAAGCAATATCAACCATGTCGAGA
ATGGTTAGTCGATGTTTAGAAGGTAGAAATCCACTACTTTATTTACTTCT
GTTCTGAACATATTGAAAAtgtgttttttaaaagattcaCTCATAAGCTT
CTTCacaaaaaagaatatttcagcACAAAATTAGAGACATGTTTCTATTT
TACAGGCTTAGTTTGCTATATGTGCCAGTTTTGGCGTAATATgtggccct
aattggcgtaagcccgaAATTGGCCTTTGgcggaataagggccggcgtaa
aaggggccggcgtgAAAAGGGTCGATAAAGTATCTATTTTTTCAATGTGC
GAATACGATCCTAGCCAATTTTTGACTTTATTATCCGAAACCAAGAGTCA
ATTAATATTTCTATGGCGGGAAGGCATTGCATTGCACTGATTTGAATTGA
CGTCACTCAATATAAAACTTATAAAACTCCTTACAAGAGCTTAAGTTACG
TCAATTCTTCACTTCAAAATGAGTCGATAGCCCACCATGAAAATCAACCT
ATGCGAAACTGACCATAATGATGCTTAAAAAACGGTGGAATTGGTCAGGT
ACTGGCTAATAAATTCCTTCCTTCCCTTATGAAAGAAGACGAAATATCGT
AAAGAAAATGTACTTTTATCTTTCCTACAGTTATGAACTTCTTGatacaa
aaaatatcaatagaATAACAGTACACGTAGTTGGGTTGACAAAACGATAT
GAATTTCagaatgaaagaaaatattcgTATAATGTCTTTAGGAGATTTTT
ATTGGGTGTTTTTGAATGCGGCAACTATGGTTTAAACTTTGTGAAATGTG
GGTTATTGTAtctttggatttcattttttaggaGATGTTTTAGCATGGCA
ACTAGGACTAGGTGTTGCTTTTGATAACGTGAAAGAAATCCTTTCTGCGC
TGAAAGATCGGTTAAAACGACAAGAAAGTACCATGAAAATGATATTAATT
GACAACTGCTGTCAATGGAGGTCGAAGCTTGAAAGTGTATTCGGTGATA Coding sequence (CDS) from alignment at sc0000026:65636..67934+ >TCONS_00003253 ID=TCONS_00003253|Name=TCONS_00003253|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at sc0000026:65636..67934+ (Clytia hemisphaerica)
ATGGATCAGCATACTTTTGTAGCAGACTCAATTGAAAAATTCTGTAAAGG
CGATATACCTCATGATTTTATCTTCCGTTACCCATACAAAACGAAAGGTC
AAGTCAACGATGTTATTGTTTGGGATCCTAGAATAATTGAACCGACATGC
ACTATTTTCTGCCCAAAGTGCAAAGACAATGTATTGACTGATAATCGAtg
gaaaaatggtgaaaaatctTACGAAGGACCGCGCAAGCTGTATGGAGTTA
CTCAAGATGCACTTCTTGTATCCAGAGTCTATCTTTGTAGAAACAACCAT
CAATCGATTGCACATGACCAAGGAATTTTGGAGCAATGTATTTTTATAGA
CACCTTCCCGTTTcatctttttttcaaatgcgGGATAACAAAAGAGCTTT
ATGATTTCATTATAACACATTTTGACGTTGGTTTGTCTCCATCAGATATC
CAAGTACTATGGCAGCAAACACAATTTAACCACTTTACAAGCATAcgtga
tgaaaaagaaaataactttgaaaataagggattaCACTTGGCATTGAAAA
TCATCAATTCCTGCATTatcgaaagattttttaaatgggAGTCATTATAC
ACCGTTAAAATGACGCAGACCACTGCAACATCATCTATATCTTGCGATCA
TACTTTTAAAGTATCAGCAAATATCGGATTATACATTGACGGTAGCTGGG
TTAAGATTTGTGATAATCTATTTGTTGTTCTAAACGAAAAAGgaGATGTT
TTAGCATGGCAACTAGGACTAGGTGTTGCTTTTGATAACGTGAAAGAAAT
CCTTTCTGCGCTGAAAGATCGGTTAAAACGACAAGAAAGTACCATGAAAA
TGATATTAATTGACAACTGCTGTCAATGGAGGTCGAAGCTTGAAAGTGTA
TTCGGTGATATGGATCAGCATACTTTTGTAGCAGACTCAATTGAAAAATT
CTGTAAAGGCGATATACCTCATGATTTTATCTTCCGTTACCCATACAAAA
CGAAAGGTCAAGTCAACGATGTTATTGTTTGGGATCCTAGAATAATTGAA
CCGACATGCACTATTTTCTGCCCAAAGTGCAAAGACAATGTATTGACTGA
TAATCGAtggaaaaatggtgaaaaatctTACGAAGGACCGCGCAAGCTGT
ATGGAGTTACTCAAGATGCACTTCTTGTATCCAGAGTCTATCTTTGTAGA
AACAACCATCAATCGATTGCACATGACCAAGGAATTTTGGAGCAATGTAT
TTTTATAGACACCTTCCCGTTTcatctttttttcaaatgcgGGATAACAA
AAGAGCTTTATGATTTCATTATAACACATTTTGACGTTGGTTTGTCTCCA
TCAGATATCCAAGTACTATGGCAGCAAACACAATTTAACCACTTTACAAG
CATAcgtgatgaaaaagaaaataactttgaaaataagggattaCACTTGG
CATTGAAAATCATCAATTCCTGCATTatcgaaagattttttaaatgggAG
TCATTATACACCGTTAAAATGACGCAGACCACTGCAACATCATCTATATC
TTGCGATCATACTTTTAAAGTATCAGCAAATATCGGATTATACATTGACG
GTAGCTGGGTTAAGATTTGTGATAATCTATTTGTTGTTCTAAACGAAAAA
GgaGATGTTTTAGCATGGCAACTAGGACTAGGTGTTGCTTTTGATAACGT
GAAAGAAATCCTTTCTGCGCTGAAAGATCGGTTAAAACGACAAGAAAGTA
CCATGAAAATGATATTAATTGACAACTGCTGTCAATGGAGGTCGAAGCTT
GAAAGTGTATTCGGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003253-exon-sc0000026-1491911889:65636..66426 | TCONS_00003253-exon-sc0000026-1491911889:65636..66426 | Clytia hemisphaerica | exon |
| TCONS_00003253-exon-sc0000026-1510915933:65636..66426 | TCONS_00003253-exon-sc0000026-1510915933:65636..66426 | Clytia hemisphaerica | exon |
| TCONS_00003253-exon-sc0000026-1575043694:65636..66426 | TCONS_00003253-exon-sc0000026-1575043694:65636..66426 | Clytia hemisphaerica | exon |
| TCONS_00003253-exon-sc0000026-1491911889:67767..67934 | TCONS_00003253-exon-sc0000026-1491911889:67767..67934 | Clytia hemisphaerica | exon |
| TCONS_00003253-exon-sc0000026-1510915933:67767..67934 | TCONS_00003253-exon-sc0000026-1510915933:67767..67934 | Clytia hemisphaerica | exon |
| TCONS_00003253-exon-sc0000026-1575043694:67767..67934 | TCONS_00003253-exon-sc0000026-1575043694:67767..67934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:65636..67934 + |
Blast
The following BLAST results are available for this feature:
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