TCONS_00003251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003251
Unique NameTCONS_00003251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003251 ID=TCONS_00003251|Name=TCONS_00003251|organism=Clytia hemisphaerica|type=transcript|length=507bp
ataccagtgttgattgggtttgaaaaggaagattttagtcatttcttgta
accagagcagttttcgatgcaatttttatcgtcgaaccaaagaaattttg
cactaaaatcctgataaagaagTAAAACAAAAggtatatttgctctaaat
attcgactttagactaaaataattcaataaacgccccctctcTAGAAATC
TTCTCACTCTTAGCATACTACAACCTCTGAGTAAACTACCCTAAAAAATG
AGTGGGATATTTTAGGATAATCAAAGGATGTAGTATACTGTGGACTTTGT
ATGCTACAAAGATCTGATGGCTTTGAAAGTGAACATCAAGCACGTCAATT
ATAAATTTATTACAAGACAAGAAGGCTCAACATCAATCCCTACTTCTGAT
AAATGATTCTTTTTTTCTGACTGGTTGATATTTCCcactctttgtttttt
ttagaggTATCATTTGTCATTTTCAAAGGTTACTTAGAGGACTTTAAGGA
GATTATG
Run BLAST on NCBI

transcript from alignment at sc0000025:960812..961318

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003251 ID=TCONS_00003251|Name=TCONS_00003251|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at sc0000025:960812..961318 (Clytia hemisphaerica)
CATAATCTCCTTAAAGTCCTCTAAGTAACCTTTGAAAATGACAAATGATA
cctctaaaaaaaacaaagagtgGGAAATATCAACCAGTCAGAAAAAAAGA
ATCATTTATCAGAAGTAGGGATTGATGTTGAGCCTTCTTGTCTTGTAATA
AATTTATAATTGACGTGCTTGATGTTCACTTTCAAAGCCATCAGATCTTT
GTAGCATACAAAGTCCACAGTATACTACATCCTTTGATTATCCTAAAATA
TCCCACTCATTTTTTAGGGTAGTTTACTCAGAGGTTGTAGTATGCTAAGA
GTGAGAAGATTTCTAgagagggggcgtttattgaattattttagtctaaa
gtcgaatatttagagcaaatataccTTTTGTTTTActtctttatcaggat
tttagtgcaaaatttctttggttcgacgataaaaattgcatcgaaaactg
ctctggttacaagaaatgactaaaatcttccttttcaaacccaatcaaca
ctggtat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001811XLOC_001811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003251-exon-sc0000025-1491911889:960812..961318TCONS_00003251-exon-sc0000025-1491911889:960812..961318Clytia hemisphaericaexon
TCONS_00003251-exon-sc0000025-1510915933:960812..961318TCONS_00003251-exon-sc0000025-1510915933:960812..961318Clytia hemisphaericaexon
TCONS_00003251-exon-sc0000025-1575043694:960812..961318TCONS_00003251-exon-sc0000025-1575043694:960812..961318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:960812..961318 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.812947	1.36628	0.495991	0.594222	1.40121	0.663039	0.208001	0	0	0.19032	0.331523	0.854268	0.204585	0.303047	0.344663	0	0.253112	0.30858	0.852614	1.10351	0.240709	0.255841	0.13464	0.240852	0.503342	0.278128	0.175163	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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